data_1DZN # _model_server_result.job_id xKQrZqQC5Q4QQL6D5_h5lQ _model_server_result.datetime_utc '2024-12-01 00:07:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dzn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 1DZN # _exptl.entry_id 1DZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DZN _cell.length_a 131.33 _cell.length_b 131.33 _cell.length_c 134.66 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 131.33 0 0 3 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 131.33 0 4 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 131.33 131.33 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 422 A HIS 422 1_555 C C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.576 ? covale ? covale2 B NE2 HIS 422 B HIS 422 1_555 E C8M FAD . B FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 107 n n PA O2A FAD sing 108 n n PA O5B FAD sing 109 n n PA O3P FAD sing 110 n n O2A HOA2 FAD sing 111 n n O5B C5B FAD sing 112 n n C5B C4B FAD sing 113 n n C5B H51A FAD sing 114 n n C5B H52A FAD sing 115 n n C4B O4B FAD sing 116 n n C4B C3B FAD sing 117 n n C4B H4B FAD sing 118 n n O4B C1B FAD sing 119 n n C3B O3B FAD sing 120 n n C3B C2B FAD sing 121 n n C3B H3B FAD sing 122 n n O3B HO3A FAD sing 123 n n C2B O2B FAD sing 124 n n C2B C1B FAD sing 125 n n C2B H2B FAD sing 126 n n O2B HO2A FAD sing 127 n n C1B N9A FAD sing 128 n n C1B H1B FAD sing 129 n n N9A C8A FAD sing 130 n y N9A C4A FAD sing 131 n y C8A N7A FAD doub 132 n y C8A H8A FAD sing 133 n n N7A C5A FAD sing 134 n y C5A C6A FAD sing 135 n y C5A C4A FAD doub 136 n y C6A N6A FAD sing 137 n n C6A N1A FAD doub 138 n y N6A H61A FAD sing 139 n n N6A H62A FAD sing 140 n n N1A C2A FAD sing 141 n y C2A N3A FAD doub 142 n y C2A H2A FAD sing 143 n n N3A C4A FAD sing 144 n y N1 C2 FAD sing 145 n n N1 C10 FAD doub 146 n n C2 O2 FAD doub 147 n n C2 N3 FAD sing 148 n n N3 C4 FAD sing 149 n n N3 HN3 FAD sing 150 n n C4 O4 FAD doub 151 n n C4 C4X FAD sing 152 n n C4X N5 FAD doub 153 n n C4X C10 FAD sing 154 n n N5 C5X FAD sing 155 n n C5X C6 FAD doub 156 n y C5X C9A FAD sing 157 n y C6 C7 FAD sing 158 n y C6 H6 FAD sing 159 n n C7 C7M FAD sing 160 n n C7 C8 FAD doub 161 n y C7M HM71 FAD sing 162 n n C7M HM72 FAD sing 163 n n C7M HM73 FAD sing 164 n n C8 C8M FAD sing 165 n n C8 C9 FAD sing 166 n y C8M HM81 FAD sing 167 n n C8M HM82 FAD sing 168 n n C8M HM83 FAD sing 169 n n C9 C9A FAD doub 170 n y C9 H9 FAD sing 171 n n C9A N10 FAD sing 172 n n N10 C10 FAD sing 173 n n N10 C1' FAD sing 174 n n C1' C2' FAD sing 175 n n C1' "H1'1" FAD sing 176 n n C1' "H1'2" FAD sing 177 n n C2' O2' FAD sing 178 n n C2' C3' FAD sing 179 n n C2' H2' FAD sing 180 n n O2' HO2' FAD sing 181 n n C3' O3' FAD sing 182 n n C3' C4' FAD sing 183 n n C3' H3' FAD sing 184 n n O3' HO3' FAD sing 185 n n C4' O4' FAD sing 186 n n C4' C5' FAD sing 187 n n C4' H4' FAD sing 188 n n O4' HO4' FAD sing 189 n n C5' O5' FAD sing 190 n n C5' "H5'1" FAD sing 191 n n C5' "H5'2" FAD sing 192 n n O5' P FAD sing 193 n n P O1P FAD doub 194 n n P O2P FAD sing 195 n n P O3P FAD sing 196 n n O2P HOP2 FAD sing 197 n n # _atom_sites.entry_id 1DZN _atom_sites.fract_transf_matrix[1][1] 0.007614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 600 600 FAD FAD . D 3 EUG A 1 601 601 EUG EUG . E 2 FAD B 1 600 600 FAD FAD . F 3 EUG B 1 601 601 EUG EUG . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 90.407 37.69 36.388 1 49.05 ? PA FAD 600 B 1 HETATM 2 O O1A FAD . . . E 2 89.116 37.432 35.699 1 50.22 ? O1A FAD 600 B 1 HETATM 3 O O2A FAD . . . E 2 91.006 38.885 36.337 1 49.6 ? O2A FAD 600 B 1 HETATM 4 O O5B FAD . . . E 2 89.785 37.535 37.761 1 51.07 ? O5B FAD 600 B 1 HETATM 5 C C5B FAD . . . E 2 89.886 38.602 38.741 1 52.59 ? C5B FAD 600 B 1 HETATM 6 C C4B FAD . . . E 2 88.553 38.673 39.498 1 52.6 ? C4B FAD 600 B 1 HETATM 7 O O4B FAD . . . E 2 88.941 39.377 40.732 1 52.96 ? O4B FAD 600 B 1 HETATM 8 C C3B FAD . . . E 2 87.336 39.425 38.954 1 52.24 ? C3B FAD 600 B 1 HETATM 9 O O3B FAD . . . E 2 86.264 38.732 38.404 1 51.12 ? O3B FAD 600 B 1 HETATM 10 C C2B FAD . . . E 2 86.901 40.33 40.099 1 52.51 ? C2B FAD 600 B 1 HETATM 11 O O2B FAD . . . E 2 86.08 39.618 40.992 1 52.04 ? O2B FAD 600 B 1 HETATM 12 C C1B FAD . . . E 2 88.187 40.629 40.761 1 52.5 ? C1B FAD 600 B 1 HETATM 13 N N9A FAD . . . E 2 89.219 41.46 40.174 1 50.67 ? N9A FAD 600 B 1 HETATM 14 C C8A FAD . . . E 2 90.232 41.155 39.313 1 49.75 ? C8A FAD 600 B 1 HETATM 15 N N7A FAD . . . E 2 91.018 42.185 39.002 1 49.35 ? N7A FAD 600 B 1 HETATM 16 C C5A FAD . . . E 2 90.503 43.236 39.726 1 49.53 ? C5A FAD 600 B 1 HETATM 17 C C6A FAD . . . E 2 90.891 44.638 39.872 1 48.89 ? C6A FAD 600 B 1 HETATM 18 N N6A FAD . . . E 2 91.885 45.239 39.274 1 48.42 ? N6A FAD 600 B 1 HETATM 19 N N1A FAD . . . E 2 90.115 45.363 40.717 1 49.19 ? N1A FAD 600 B 1 HETATM 20 C C2A FAD . . . E 2 89.036 44.861 41.37 1 49.46 ? C2A FAD 600 B 1 HETATM 21 N N3A FAD . . . E 2 88.62 43.6 41.29 1 49.46 ? N3A FAD 600 B 1 HETATM 22 C C4A FAD . . . E 2 89.379 42.824 40.472 1 50 ? C4A FAD 600 B 1 HETATM 23 N N1 FAD . . . E 2 93.672 29.718 40.4 1 52.3 ? N1 FAD 600 B 1 HETATM 24 C C2 FAD . . . E 2 94.537 29.714 41.402 1 51.93 ? C2 FAD 600 B 1 HETATM 25 O O2 FAD . . . E 2 94.468 30.588 42.212 1 51.91 ? O2 FAD 600 B 1 HETATM 26 N N3 FAD . . . E 2 95.524 28.694 41.534 1 52.13 ? N3 FAD 600 B 1 HETATM 27 C C4 FAD . . . E 2 95.651 27.677 40.636 1 51.52 ? C4 FAD 600 B 1 HETATM 28 O O4 FAD . . . E 2 96.485 26.81 40.701 1 50 ? O4 FAD 600 B 1 HETATM 29 C C4X FAD . . . E 2 94.693 27.691 39.553 1 52 ? C4X FAD 600 B 1 HETATM 30 N N5 FAD . . . E 2 94.791 26.694 38.663 1 51.63 ? N5 FAD 600 B 1 HETATM 31 C C5X FAD . . . E 2 93.833 26.77 37.691 1 51.91 ? C5X FAD 600 B 1 HETATM 32 C C6 FAD . . . E 2 93.903 25.736 36.766 1 51.98 ? C6 FAD 600 B 1 HETATM 33 C C7 FAD . . . E 2 93.021 25.66 35.734 1 52.18 ? C7 FAD 600 B 1 HETATM 34 C C7M FAD . . . E 2 93.166 24.507 34.762 1 51.15 ? C7M FAD 600 B 1 HETATM 35 C C8 FAD . . . E 2 92.023 26.672 35.609 1 51.86 ? C8 FAD 600 B 1 HETATM 36 C C8M FAD . . . E 2 90.985 26.631 34.506 1 50.62 ? C8M FAD 600 B 1 HETATM 37 C C9 FAD . . . E 2 91.931 27.689 36.532 1 51.72 ? C9 FAD 600 B 1 HETATM 38 C C9A FAD . . . E 2 92.832 27.749 37.566 1 51.59 ? C9A FAD 600 B 1 HETATM 39 N N10 FAD . . . E 2 92.82 28.796 38.505 1 51.46 ? N10 FAD 600 B 1 HETATM 40 C C10 FAD . . . E 2 93.703 28.746 39.491 1 51.9 ? C10 FAD 600 B 1 HETATM 41 C C1' FAD . . . E 2 91.853 29.875 38.418 1 51.76 ? C1' FAD 600 B 1 HETATM 42 C C2' FAD . . . E 2 92.153 31.011 37.413 1 51.6 ? C2' FAD 600 B 1 HETATM 43 O O2' FAD . . . E 2 92.13 30.564 36.076 1 51.79 ? O2' FAD 600 B 1 HETATM 44 C C3' FAD . . . E 2 93.557 31.492 37.765 1 50.48 ? C3' FAD 600 B 1 HETATM 45 O O3' FAD . . . E 2 93.571 31.537 39.19 1 49.51 ? O3' FAD 600 B 1 HETATM 46 C C4' FAD . . . E 2 93.689 32.902 37.232 1 49.32 ? C4' FAD 600 B 1 HETATM 47 O O4' FAD . . . E 2 94.85 33.614 37.675 1 47.91 ? O4' FAD 600 B 1 HETATM 48 C C5' FAD . . . E 2 92.445 33.639 37.748 1 49.05 ? C5' FAD 600 B 1 HETATM 49 O O5' FAD . . . E 2 92.096 34.785 36.757 1 47.76 ? O5' FAD 600 B 1 HETATM 50 P P FAD . . . E 2 92.765 36.048 36.343 1 47.15 ? P FAD 600 B 1 HETATM 51 O O1P FAD . . . E 2 93.724 36.623 37.325 1 47.95 ? O1P FAD 600 B 1 HETATM 52 O O2P FAD . . . E 2 93.482 35.938 35.154 1 49.9 ? O2P FAD 600 B 1 HETATM 53 O O3P FAD . . . E 2 91.557 36.752 35.975 1 49.21 ? O3P FAD 600 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 53 #