data_1DZQ # _model_server_result.job_id 66C3UiBxab0nVSMLorc3pQ _model_server_result.datetime_utc '2024-12-24 17:15:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":401}' # _entry.id 1DZQ # _exptl.entry_id 1DZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DZQ _cell.length_a 104.87 _cell.length_b 104.87 _cell.length_c 175.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 N N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 184 A CYS 184 1_555 C SG CYS 184 C CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 184 B CYS 184 1_555 D SG CYS 184 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A OG SER 112 A SER 112 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 B OG SER 112 B SER 112 1_555 K C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 C OG SER 112 C SER 112 1_555 N C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale4 D OG SER 112 D SER 112 1_555 R C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? metalc ? metalc1 A OE2 GLU 126 A GLU 126 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc2 A OD2 ASP 128 A ASP 128 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc3 A OD1 ASP 128 A ASP 128 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 A OD2 ASP 128 A ASP 128 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc5 A O TYR 130 A TYR 130 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc6 A OD1 ASN 136 A ASN 136 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 A OD1 ASP 139 A ASP 139 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 A OD2 ASP 139 A ASP 139 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc9 A NE2 HIS 144 A HIS 144 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc10 B OE2 GLU 126 B GLU 126 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 B OD2 ASP 128 B ASP 128 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 B OD2 ASP 128 B ASP 128 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc13 B OD1 ASP 128 B ASP 128 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc14 B O TYR 130 B TYR 130 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc15 B OD1 ASN 136 B ASN 136 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 B OD1 ASP 139 B ASP 139 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc17 B OD2 ASP 139 B ASP 139 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc18 B NE2 HIS 144 B HIS 144 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc19 C OE2 GLU 126 C GLU 126 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc20 C OD2 ASP 128 C ASP 128 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc21 C OD2 ASP 128 C ASP 128 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc22 C OD1 ASP 128 C ASP 128 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc23 C O TYR 130 C TYR 130 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc24 C OD1 ASN 136 C ASN 136 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc25 C OD1 ASP 139 C ASP 139 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc26 C OD2 ASP 139 C ASP 139 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc27 C NE2 HIS 144 C HIS 144 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc28 D OE2 GLU 126 D GLU 126 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc29 D OD2 ASP 128 D ASP 128 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc30 D OD2 ASP 128 D ASP 128 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc31 D OD1 ASP 128 D ASP 128 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc32 D O TYR 130 D TYR 130 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc33 D OD1 ASN 136 D ASN 136 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc34 D OD1 ASP 139 D ASP 139 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc35 D OD2 ASP 139 D ASP 139 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc36 D NE2 HIS 144 D HIS 144 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1DZQ _atom_sites.fract_transf_matrix[1][1] 0.009536 _atom_sites.fract_transf_matrix[1][2] 0.005505 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 301 301 MN MN . F 3 CA A 1 302 302 CA CA . G 4 NAG A 1 401 401 NAG NAG . H 5 GAL A 1 502 502 GAL GAL . I 2 MN B 1 301 301 MN MN . J 3 CA B 1 302 302 CA CA . K 4 NAG B 1 401 401 NAG NAG . L 2 MN C 1 301 301 MN MN . M 3 CA C 1 302 302 CA CA . N 4 NAG C 1 401 401 NAG NAG . O 5 GAL C 1 502 502 GAL GAL . P 2 MN D 1 301 301 MN MN . Q 3 CA D 1 302 302 CA CA . R 4 NAG D 1 401 401 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . R 4 83.542 -34.425 60.74 1 63.11 ? C1 NAG 401 D 1 HETATM 2 C C2 NAG . . . R 4 83.672 -35.415 59.579 1 66.11 ? C2 NAG 401 D 1 HETATM 3 C C3 NAG . . . R 4 84.805 -34.948 58.66 1 67.13 ? C3 NAG 401 D 1 HETATM 4 C C4 NAG . . . R 4 84.452 -33.562 58.138 1 67.65 ? C4 NAG 401 D 1 HETATM 5 C C5 NAG . . . R 4 84.184 -32.601 59.311 1 68.35 ? C5 NAG 401 D 1 HETATM 6 C C6 NAG . . . R 4 83.655 -31.264 58.822 1 68.96 ? C6 NAG 401 D 1 HETATM 7 C C7 NAG . . . R 4 83.344 -37.783 59.405 1 69.03 ? C7 NAG 401 D 1 HETATM 8 C C8 NAG . . . R 4 83.626 -39.176 59.933 1 68.52 ? C8 NAG 401 D 1 HETATM 9 N N2 NAG . . . R 4 83.911 -36.764 60.049 1 67.82 ? N2 NAG 401 D 1 HETATM 10 O O3 NAG . . . R 4 84.975 -35.85 57.571 1 66.77 ? O3 NAG 401 D 1 HETATM 11 O O4 NAG . . . R 4 85.516 -33.064 57.334 1 67.53 ? O4 NAG 401 D 1 HETATM 12 O O5 NAG . . . R 4 83.182 -33.142 60.214 1 66.51 ? O5 NAG 401 D 1 HETATM 13 O O6 NAG . . . R 4 82.43 -31.427 58.114 1 70.08 ? O6 NAG 401 D 1 HETATM 14 O O7 NAG . . . R 4 82.619 -37.633 58.414 1 69.32 ? O7 NAG 401 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #