data_1DZQ # _model_server_result.job_id -gcC8tm0MN6kDrw5yWsxdQ _model_server_result.datetime_utc '2024-12-24 16:56:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 1DZQ # _exptl.entry_id 1DZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DZQ _cell.length_a 104.87 _cell.length_b 104.87 _cell.length_c 175.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 184 A CYS 184 1_555 C SG CYS 184 C CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 184 B CYS 184 1_555 D SG CYS 184 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A OG SER 112 A SER 112 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 B OG SER 112 B SER 112 1_555 K C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 C OG SER 112 C SER 112 1_555 N C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale4 D OG SER 112 D SER 112 1_555 R C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? metalc ? metalc1 A OE2 GLU 126 A GLU 126 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc2 A OD2 ASP 128 A ASP 128 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc3 A OD1 ASP 128 A ASP 128 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 A OD2 ASP 128 A ASP 128 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc5 A O TYR 130 A TYR 130 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc6 A OD1 ASN 136 A ASN 136 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 A OD1 ASP 139 A ASP 139 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 A OD2 ASP 139 A ASP 139 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc9 A NE2 HIS 144 A HIS 144 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc10 B OE2 GLU 126 B GLU 126 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 B OD2 ASP 128 B ASP 128 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 B OD2 ASP 128 B ASP 128 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc13 B OD1 ASP 128 B ASP 128 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc14 B O TYR 130 B TYR 130 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc15 B OD1 ASN 136 B ASN 136 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 B OD1 ASP 139 B ASP 139 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc17 B OD2 ASP 139 B ASP 139 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc18 B NE2 HIS 144 B HIS 144 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc19 C OE2 GLU 126 C GLU 126 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc20 C OD2 ASP 128 C ASP 128 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc21 C OD2 ASP 128 C ASP 128 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc22 C OD1 ASP 128 C ASP 128 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc23 C O TYR 130 C TYR 130 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc24 C OD1 ASN 136 C ASN 136 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc25 C OD1 ASP 139 C ASP 139 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc26 C OD2 ASP 139 C ASP 139 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc27 C NE2 HIS 144 C HIS 144 1_555 L MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc28 D OE2 GLU 126 D GLU 126 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc29 D OD2 ASP 128 D ASP 128 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc30 D OD2 ASP 128 D ASP 128 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc31 D OD1 ASP 128 D ASP 128 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc32 D O TYR 130 D TYR 130 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc33 D OD1 ASN 136 D ASN 136 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc34 D OD1 ASP 139 D ASP 139 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc35 D OD2 ASP 139 D ASP 139 1_555 Q CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc36 D NE2 HIS 144 D HIS 144 1_555 P MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 83 n n C1 O1 GAL sing 84 n n C1 O5 GAL sing 85 n n C1 H1 GAL sing 86 n n C2 C3 GAL sing 87 n n C2 O2 GAL sing 88 n n C2 H2 GAL sing 89 n n C3 C4 GAL sing 90 n n C3 O3 GAL sing 91 n n C3 H3 GAL sing 92 n n C4 C5 GAL sing 93 n n C4 O4 GAL sing 94 n n C4 H4 GAL sing 95 n n C5 C6 GAL sing 96 n n C5 O5 GAL sing 97 n n C5 H5 GAL sing 98 n n C6 O6 GAL sing 99 n n C6 H61 GAL sing 100 n n C6 H62 GAL sing 101 n n O1 HO1 GAL sing 102 n n O2 HO2 GAL sing 103 n n O3 HO3 GAL sing 104 n n O4 HO4 GAL sing 105 n n O6 HO6 GAL sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1DZQ _atom_sites.fract_transf_matrix[1][1] 0.009536 _atom_sites.fract_transf_matrix[1][2] 0.005505 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 301 301 MN MN . F 3 CA A 1 302 302 CA CA . G 4 NAG A 1 401 401 NAG NAG . H 5 GAL A 1 502 502 GAL GAL . I 2 MN B 1 301 301 MN MN . J 3 CA B 1 302 302 CA CA . K 4 NAG B 1 401 401 NAG NAG . L 2 MN C 1 301 301 MN MN . M 3 CA C 1 302 302 CA CA . N 4 NAG C 1 401 401 NAG NAG . O 5 GAL C 1 502 502 GAL GAL . P 2 MN D 1 301 301 MN MN . Q 3 CA D 1 302 302 CA CA . R 4 NAG D 1 401 401 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . H 5 64.732 44.287 76.111 1 62.53 ? C1 GAL 502 A 1 HETATM 2 C C2 GAL . . . H 5 65.631 43.059 76.344 1 61.7 ? C2 GAL 502 A 1 HETATM 3 C C3 GAL . . . H 5 66.087 42.465 75.011 1 59.9 ? C3 GAL 502 A 1 HETATM 4 C C4 GAL . . . H 5 64.86 42.173 74.147 1 60.16 ? C4 GAL 502 A 1 HETATM 5 C C5 GAL . . . H 5 64.099 43.473 73.942 1 61.78 ? C5 GAL 502 A 1 HETATM 6 C C6 GAL . . . H 5 62.876 43.306 73.052 1 59.89 ? C6 GAL 502 A 1 HETATM 7 O O1 GAL . . . H 5 64.187 44.699 77.318 1 62.66 ? O1 GAL 502 A 1 HETATM 8 O O2 GAL . . . H 5 66.773 43.434 77.11 1 61.95 ? O2 GAL 502 A 1 HETATM 9 O O3 GAL . . . H 5 66.833 41.277 75.237 1 55.04 ? O3 GAL 502 A 1 HETATM 10 O O4 GAL . . . H 5 64.013 41.247 74.808 1 59.85 ? O4 GAL 502 A 1 HETATM 11 O O5 GAL . . . H 5 63.646 43.974 75.221 1 63.09 ? O5 GAL 502 A 1 HETATM 12 O O6 GAL . . . H 5 62.237 44.553 72.828 1 58.11 ? O6 GAL 502 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #