data_1E03 # _model_server_result.job_id IuQhKYYg5ASVMPdSrbNGlQ _model_server_result.datetime_utc '2024-11-23 06:52:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":821}' # _entry.id 1E03 # _exptl.entry_id 1E03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.88 _cell.angle_gamma 90 _cell.entry_id 1E03 _cell.length_a 70.511 _cell.length_b 87.071 _cell.length_c 97.349 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,E,F,H,J,L 1 1 A,C,D,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 Z9K Z9L C1 O1 . O4 HO4 . sing 5 ? 4 3 2 GU6 Z9K C1 O1 . O4 HO4 . sing 6 ? 4 4 3 GU1 GU6 C1 O1 . O4 HO4 . sing 7 ? 4 5 4 Z9H GU1 C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 A 1 NAG I 801 NAG 2 n C NAG 2 A 2 NAG I 802 NAG 3 n D NAG 1 B 1 NAG I 841 NAG 3 n D NAG 2 B 2 NAG I 842 NAG 3 n D BMA 3 B 3 BMA I 843 BMA 3 n E NAG 1 C 1 NAG L 841 NAG 3 n E NAG 2 C 2 NAG L 842 NAG 3 n E BMA 3 C 3 BMA L 843 BMA 3 n F NAG 1 D 1 NAG L 861 NAG 3 n F NAG 2 D 2 NAG L 862 NAG 3 n F BMA 3 D 3 BMA L 863 BMA 4 n G Z9L 1 E 1 Z9L I 901 NTP 4 n G Z9K 2 E 2 Z9K I 901 NTP 4 n G GU6 3 E 3 GU6 I 901 NTP 4 n G GU1 4 E 4 GU1 I 901 NTP 4 n G Z9H 5 E 5 Z9H I 901 NTP 4 n H Z9L 1 F 1 Z9L L 901 NTP 4 n H Z9K 2 F 2 Z9K L 901 NTP 4 n H GU6 3 F 3 GU6 L 901 NTP 4 n H GU1 4 F 4 GU1 L 901 NTP 4 n H Z9H 5 F 5 Z9H L 901 NTP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 I CYS 8 1_555 A SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 A SG CYS 21 I CYS 21 1_555 A SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 247 I CYS 247 1_555 A SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 8 L CYS 8 1_555 B SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 B SG CYS 21 L CYS 21 1_555 B SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 247 L CYS 247 1_555 B SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 96 I ASN 96 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale2 A ND2 ASN 135 I ASN 135 1_555 I C1 NAG . I NAG 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale3 A ND2 ASN 155 I ASN 155 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale4 B ND2 ASN 96 L ASN 96 1_555 J C1 NAG . L NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale5 B ND2 ASN 155 L ASN 155 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale6 B ND2 ASN 192 L ASN 192 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale7 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale8 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale9 D O4 NAG . B NAG 2 1_555 D C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale10 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale11 E O4 NAG . C NAG 2 1_555 E C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale12 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale13 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale14 G O4 Z9L . E Z9L 1 1_555 G C1 Z9K . E Z9K 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 sing covale ? covale15 G O4 Z9K . E Z9K 2 1_555 G C1 GU6 . E GU6 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 sing covale ? covale16 G O4 GU6 . E GU6 3 1_555 G C1 GU1 . E GU1 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 sing covale ? covale17 G O4 GU1 . E GU1 4 1_555 G C1 Z9H . E Z9H 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing covale ? covale18 H O4 Z9L . F Z9L 1 1_555 H C1 Z9K . F Z9K 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale19 H O4 Z9K . F Z9K 2 1_555 H C1 GU6 . F GU6 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 sing covale ? covale20 H O4 GU6 . F GU6 3 1_555 H C1 GU1 . F GU1 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 sing covale ? covale21 H O4 GU1 . F GU1 4 1_555 H C1 Z9H . F Z9H 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 326 n n C1 O1 NAG sing 327 n n C1 O5 NAG sing 328 n n C1 H1 NAG sing 329 n n C2 C3 NAG sing 330 n n C2 N2 NAG sing 331 n n C2 H2 NAG sing 332 n n C3 C4 NAG sing 333 n n C3 O3 NAG sing 334 n n C3 H3 NAG sing 335 n n C4 C5 NAG sing 336 n n C4 O4 NAG sing 337 n n C4 H4 NAG sing 338 n n C5 C6 NAG sing 339 n n C5 O5 NAG sing 340 n n C5 H5 NAG sing 341 n n C6 O6 NAG sing 342 n n C6 H61 NAG sing 343 n n C6 H62 NAG sing 344 n n C7 C8 NAG sing 345 n n C7 N2 NAG sing 346 n n C7 O7 NAG doub 347 n n C8 H81 NAG sing 348 n n C8 H82 NAG sing 349 n n C8 H83 NAG sing 350 n n N2 HN2 NAG sing 351 n n O1 HO1 NAG sing 352 n n O3 HO3 NAG sing 353 n n O4 HO4 NAG sing 354 n n O6 HO6 NAG sing 355 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1E03 _atom_sites.fract_transf_matrix[1][1] 0.014182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00485 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG I 1 821 821 NAG NAG . J 5 NAG L 1 801 801 NAG NAG . K 6 HOH I 1 2001 2001 HOH HOH . K 6 HOH I 2 2002 2002 HOH HOH . K 6 HOH I 3 2003 2003 HOH HOH . K 6 HOH I 4 2004 2004 HOH HOH . K 6 HOH I 5 2005 2005 HOH HOH . K 6 HOH I 6 2006 2006 HOH HOH . L 6 HOH L 1 2001 2001 HOH HOH . L 6 HOH L 2 2002 2002 HOH HOH . L 6 HOH L 3 2003 2003 HOH HOH . L 6 HOH L 4 2004 2004 HOH HOH . L 6 HOH L 5 2005 2005 HOH HOH . L 6 HOH L 6 2006 2006 HOH HOH . L 6 HOH L 7 2007 2007 HOH HOH . L 6 HOH L 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 5 38.598 -14.974 -14.919 1 125.01 ? C1 NAG 821 I 1 HETATM 2 C C2 NAG . . . I 5 39.732 -15.867 -14.434 1 127.15 ? C2 NAG 821 I 1 HETATM 3 C C3 NAG . . . I 5 39.256 -17.274 -14.117 1 127.82 ? C3 NAG 821 I 1 HETATM 4 C C4 NAG . . . I 5 38.06 -17.209 -13.147 1 127.37 ? C4 NAG 821 I 1 HETATM 5 C C5 NAG . . . I 5 36.969 -16.267 -13.726 1 126.75 ? C5 NAG 821 I 1 HETATM 6 C C6 NAG . . . I 5 35.847 -16.11 -12.716 1 126.83 ? C6 NAG 821 I 1 HETATM 7 C C7 NAG . . . I 5 42.117 -15.815 -15.165 1 130.62 ? C7 NAG 821 I 1 HETATM 8 C C8 NAG . . . I 5 43.073 -16.394 -16.15 1 131.1 ? C8 NAG 821 I 1 HETATM 9 N N2 NAG . . . I 5 40.803 -15.981 -15.463 1 129.23 ? N2 NAG 821 I 1 HETATM 10 O O3 NAG . . . I 5 40.334 -17.975 -13.497 1 129.01 ? O3 NAG 821 I 1 HETATM 11 O O4 NAG . . . I 5 37.46 -18.5 -12.965 1 127.27 ? O4 NAG 821 I 1 HETATM 12 O O5 NAG . . . I 5 37.548 -14.997 -13.924 1 125.79 ? O5 NAG 821 I 1 HETATM 13 O O6 NAG . . . I 5 34.917 -15.148 -13.063 1 127.1 ? O6 NAG 821 I 1 HETATM 14 O O7 NAG . . . I 5 42.451 -15.272 -14.214 1 130.95 ? O7 NAG 821 I 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #