data_1E08 # _model_server_result.job_id vfkf0p62Pe2Gg6lvTn4e6g _model_server_result.datetime_utc '2024-12-26 22:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4}' # _entry.id 1E08 # loop_ _exptl.entry_id _exptl.method 1E08 'SOLUTION NMR' 1E08 'THEORETICAL MODEL' # _entity.details ? _entity.formula_weight 108.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-PROPANEDITHIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1E08 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G S1 PDT . A PDT 4 1_555 K C CYN . A CYN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? covale ? covale2 J C CYN . A CYN 7 1_555 L C CMO . A CMO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? covale ? covale3 K C CYN . A CYN 8 1_555 M C CMO . A CMO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 C SG CYS 9 E CYS 10 1_555 O CAB HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? covale ? covale5 C SG CYS 12 E CYS 13 1_555 O CAC HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc1 D FE3 SF4 . A SF4 1 1_555 A SG CYS 9 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 D FE2 SF4 . A SF4 1 1_555 A SG CYS 12 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 D FE4 SF4 . A SF4 1 1_555 A SG CYS 15 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc4 D FE1 SF4 . A SF4 1 1_555 A SG CYS 50 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 E FE4 SF4 . A SF4 2 1_555 A SG CYS 19 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 E FE2 SF4 . A SF4 2 1_555 A SG CYS 40 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc7 E FE3 SF4 . A SF4 2 1_555 A SG CYS 43 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 E FE1 SF4 . A SF4 2 1_555 A SG CYS 46 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc9 F FE2 SF4 . A SF4 3 1_555 A SG CYS 153 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 F FE1 SF4 . A SF4 3 1_555 A SG CYS 208 A CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc11 F FE3 SF4 . A SF4 3 1_555 A SG CYS 352 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc12 F FE4 SF4 . A SF4 3 1_555 A SG CYS 356 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc13 G S1 PDT . A PDT 4 1_555 H FE FE2 . A FE2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc14 G S2 PDT . A PDT 4 1_555 H FE FE2 . A FE2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 G S1 PDT . A PDT 4 1_555 I FE FE2 . A FE2 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc16 G S2 PDT . A PDT 4 1_555 I FE FE2 . A FE2 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc17 H FE FE2 . A FE2 5 1_555 K N CYN . A CYN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc18 H FE FE2 . A FE2 5 1_555 M O CMO . A CMO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc19 I FE FE2 . A FE2 6 1_555 J N CYN . A CYN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc20 I FE FE2 . A FE2 6 1_555 L O CMO . A CMO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc21 C NE2 HIS 13 E HIS 14 1_555 O FE HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc22 C SD MET 56 E MET 57 1_555 O FE HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C3 H8 S2' _chem_comp.formula_weight 108.226 _chem_comp.id PDT _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-PROPANEDITHIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 PDT sing 323 n n C2 C3 PDT sing 324 n n C2 H21 PDT sing 325 n n C2 H22 PDT sing 326 n n C1 S1 PDT sing 327 n n C1 H11 PDT sing 328 n n C1 H12 PDT sing 329 n n S1 HS1 PDT sing 330 n n C3 S2 PDT sing 331 n n C3 H31 PDT sing 332 n n C3 H32 PDT sing 333 n n S2 HS2 PDT sing 334 n n # _atom_sites.entry_id 1E08 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SF4 A 1 1 1 SF4 SF4 . E 4 SF4 A 1 2 2 SF4 SF4 . F 4 SF4 A 1 3 3 SF4 SF4 . G 5 PDT A 1 4 4 PDT PDT . H 6 FE2 A 1 5 5 FE2 FE2 . I 6 FE2 A 1 6 6 FE2 FE2 . J 7 CYN A 1 7 7 CYN CYN . K 7 CYN A 1 8 8 CYN CYN . L 8 CMO A 1 9 9 CMO CMO . M 8 CMO A 1 10 10 CMO CMO . N 9 ZN D 1 12 12 ZN ZN . O 10 HEC E 1 80 80 HEC HEM . P 11 HOH A 1 11 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PDT . . . G 5 -0.882 3.009 -2.012 1 1 ? C2 PDT 4 A 1 HETATM 2 C C1 PDT . . . G 5 -0.807 4.097 -3.078 1 1 ? C1 PDT 4 A 1 HETATM 3 S S1 PDT . . . G 5 -2.022 5.48 -2.586 1 1 ? S1 PDT 4 A 1 HETATM 4 C C3 PDT . . . G 5 -2.06 3.333 -1.114 1 1 ? C3 PDT 4 A 1 HETATM 5 S S2 PDT . . . G 5 -2.632 5.176 -1.513 1 1 ? S2 PDT 4 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #