data_1E08 # _model_server_result.job_id DciIR1Kp6iFj2cLLUL6krg _model_server_result.datetime_utc '2025-01-14 00:39:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":80}' # _entry.id 1E08 # loop_ _exptl.entry_id _exptl.method 1E08 'SOLUTION NMR' 1E08 'THEORETICAL MODEL' # _entity.details ? _entity.formula_weight 618.503 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1E08 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G S1 PDT . A PDT 4 1_555 K C CYN . A CYN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? covale ? covale2 J C CYN . A CYN 7 1_555 L C CMO . A CMO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? covale ? covale3 K C CYN . A CYN 8 1_555 M C CMO . A CMO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 C SG CYS 9 E CYS 10 1_555 O CAB HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? covale ? covale5 C SG CYS 12 E CYS 13 1_555 O CAC HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc1 D FE3 SF4 . A SF4 1 1_555 A SG CYS 9 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 D FE2 SF4 . A SF4 1 1_555 A SG CYS 12 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 D FE4 SF4 . A SF4 1 1_555 A SG CYS 15 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc4 D FE1 SF4 . A SF4 1 1_555 A SG CYS 50 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 E FE4 SF4 . A SF4 2 1_555 A SG CYS 19 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 E FE2 SF4 . A SF4 2 1_555 A SG CYS 40 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc7 E FE3 SF4 . A SF4 2 1_555 A SG CYS 43 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 E FE1 SF4 . A SF4 2 1_555 A SG CYS 46 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc9 F FE2 SF4 . A SF4 3 1_555 A SG CYS 153 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 F FE1 SF4 . A SF4 3 1_555 A SG CYS 208 A CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc11 F FE3 SF4 . A SF4 3 1_555 A SG CYS 352 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc12 F FE4 SF4 . A SF4 3 1_555 A SG CYS 356 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc13 G S1 PDT . A PDT 4 1_555 H FE FE2 . A FE2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc14 G S2 PDT . A PDT 4 1_555 H FE FE2 . A FE2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 G S1 PDT . A PDT 4 1_555 I FE FE2 . A FE2 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc16 G S2 PDT . A PDT 4 1_555 I FE FE2 . A FE2 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc17 H FE FE2 . A FE2 5 1_555 K N CYN . A CYN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc18 H FE FE2 . A FE2 5 1_555 M O CMO . A CMO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc19 I FE FE2 . A FE2 6 1_555 J N CYN . A CYN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc20 I FE FE2 . A FE2 6 1_555 L O CMO . A CMO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc21 C NE2 HIS 13 E HIS 14 1_555 O FE HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc22 C SD MET 56 E MET 57 1_555 O FE HEC . E HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 131 n n FE NB HEC sing 132 n n FE NC HEC sing 133 n n FE ND HEC sing 134 n n CHA C1A HEC doub 135 n n CHA C4D HEC sing 136 n n CHA HHA HEC sing 137 n n CHB C4A HEC doub 138 n n CHB C1B HEC sing 139 n n CHB HHB HEC sing 140 n n CHC C4B HEC doub 141 n n CHC C1C HEC sing 142 n n CHC HHC HEC sing 143 n n CHD C4C HEC doub 144 n n CHD C1D HEC sing 145 n n CHD HHD HEC sing 146 n n NA C1A HEC sing 147 n y NA C4A HEC sing 148 n y C1A C2A HEC sing 149 n y C2A C3A HEC doub 150 n y C2A CAA HEC sing 151 n n C3A C4A HEC sing 152 n y C3A CMA HEC sing 153 n n CMA HMA1 HEC sing 154 n n CMA HMA2 HEC sing 155 n n CMA HMA3 HEC sing 156 n n CAA CBA HEC sing 157 n n CAA HAA1 HEC sing 158 n n CAA HAA2 HEC sing 159 n n CBA CGA HEC sing 160 n n CBA HBA1 HEC sing 161 n n CBA HBA2 HEC sing 162 n n CGA O1A HEC doub 163 n n CGA O2A HEC sing 164 n n O2A H2A HEC sing 165 n n NB C1B HEC sing 166 n y NB C4B HEC sing 167 n y C1B C2B HEC doub 168 n y C2B C3B HEC sing 169 n y C2B CMB HEC sing 170 n n C3B C4B HEC sing 171 n y C3B CAB HEC doub 172 e n CMB HMB1 HEC sing 173 n n CMB HMB2 HEC sing 174 n n CMB HMB3 HEC sing 175 n n CAB CBB HEC sing 176 n n CAB HAB HEC sing 177 n n CBB HBB1 HEC sing 178 n n CBB HBB2 HEC sing 179 n n CBB HBB3 HEC sing 180 n n NC C1C HEC sing 181 n y NC C4C HEC sing 182 n y C1C C2C HEC doub 183 n y C2C C3C HEC sing 184 n y C2C CMC HEC sing 185 n n C3C C4C HEC sing 186 n y C3C CAC HEC doub 187 e n CMC HMC1 HEC sing 188 n n CMC HMC2 HEC sing 189 n n CMC HMC3 HEC sing 190 n n CAC CBC HEC sing 191 n n CAC HAC HEC sing 192 n n CBC HBC1 HEC sing 193 n n CBC HBC2 HEC sing 194 n n CBC HBC3 HEC sing 195 n n ND C1D HEC sing 196 n y ND C4D HEC sing 197 n y C1D C2D HEC doub 198 n y C2D C3D HEC sing 199 n y C2D CMD HEC sing 200 n n C3D C4D HEC doub 201 n y C3D CAD HEC sing 202 n n CMD HMD1 HEC sing 203 n n CMD HMD2 HEC sing 204 n n CMD HMD3 HEC sing 205 n n CAD CBD HEC sing 206 n n CAD HAD1 HEC sing 207 n n CAD HAD2 HEC sing 208 n n CBD CGD HEC sing 209 n n CBD HBD1 HEC sing 210 n n CBD HBD2 HEC sing 211 n n CGD O1D HEC doub 212 n n CGD O2D HEC sing 213 n n O2D H2D HEC sing 214 n n # _atom_sites.entry_id 1E08 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SF4 A 1 1 1 SF4 SF4 . E 4 SF4 A 1 2 2 SF4 SF4 . F 4 SF4 A 1 3 3 SF4 SF4 . G 5 PDT A 1 4 4 PDT PDT . H 6 FE2 A 1 5 5 FE2 FE2 . I 6 FE2 A 1 6 6 FE2 FE2 . J 7 CYN A 1 7 7 CYN CYN . K 7 CYN A 1 8 8 CYN CYN . L 8 CMO A 1 9 9 CMO CMO . M 8 CMO A 1 10 10 CMO CMO . N 9 ZN D 1 12 12 ZN ZN . O 10 HEC E 1 80 80 HEC HEM . P 11 HOH A 1 11 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . O 10 27.992 5.662 13.537 1 1 ? FE HEC 80 E 1 HETATM 2 C CHA HEC . . . O 10 28.366 7.166 16.534 1 1 ? CHA HEC 80 E 1 HETATM 3 C CHB HEC . . . O 10 29.333 8.333 11.971 1 1 ? CHB HEC 80 E 1 HETATM 4 C CHC HEC . . . O 10 28.016 3.928 10.647 1 1 ? CHC HEC 80 E 1 HETATM 5 C CHD HEC . . . O 10 26.492 3.039 15.054 1 1 ? CHD HEC 80 E 1 HETATM 6 N NA HEC . . . O 10 28.653 7.404 14.125 1 1 ? NA HEC 80 E 1 HETATM 7 C C1A HEC . . . O 10 28.68 7.909 15.41 1 1 ? C1A HEC 80 E 1 HETATM 8 C C2A HEC . . . O 10 29.153 9.282 15.433 1 1 ? C2A HEC 80 E 1 HETATM 9 C C3A HEC . . . O 10 29.539 9.556 14.159 1 1 ? C3A HEC 80 E 1 HETATM 10 C C4A HEC . . . O 10 29.182 8.412 13.348 1 1 ? C4A HEC 80 E 1 HETATM 11 C CMA HEC . . . O 10 30.295 10.784 13.676 1 1 ? CMA HEC 80 E 1 HETATM 12 C CAA HEC . . . O 10 29.02 10.265 16.598 1 1 ? CAA HEC 80 E 1 HETATM 13 C CBA HEC . . . O 10 29.87 9.953 17.835 1 1 ? CBA HEC 80 E 1 HETATM 14 C CGA HEC . . . O 10 29.369 10.587 19.139 1 1 ? CGA HEC 80 E 1 HETATM 15 O O1A HEC . . . O 10 30.048 10.369 20.163 1 1 ? O1A HEC 80 E 1 HETATM 16 O O2A HEC . . . O 10 28.253 11.152 19.146 1 1 ? O2A HEC 80 E 1 HETATM 17 N NB HEC . . . O 10 28.486 6.069 11.69 1 1 ? NB HEC 80 E 1 HETATM 18 C C1B HEC . . . O 10 28.992 7.243 11.186 1 1 ? C1B HEC 80 E 1 HETATM 19 C C2B HEC . . . O 10 29.043 7.195 9.74 1 1 ? C2B HEC 80 E 1 HETATM 20 C C3B HEC . . . O 10 28.555 5.982 9.344 1 1 ? C3B HEC 80 E 1 HETATM 21 C C4B HEC . . . O 10 28.32 5.27 10.583 1 1 ? C4B HEC 80 E 1 HETATM 22 C CMB HEC . . . O 10 29.545 8.311 8.832 1 1 ? CMB HEC 80 E 1 HETATM 23 C CAB HEC . . . O 10 27.845 5.72 8.01 1 1 ? CAB HEC 80 E 1 HETATM 24 C CBB HEC . . . O 10 28.796 5.424 6.859 1 1 ? CBB HEC 80 E 1 HETATM 25 N NC HEC . . . O 10 27.39 3.883 12.977 1 1 ? NC HEC 80 E 1 HETATM 26 C C1C HEC . . . O 10 27.599 3.267 11.777 1 1 ? C1C HEC 80 E 1 HETATM 27 C C2C HEC . . . O 10 27.068 1.929 11.786 1 1 ? C2C HEC 80 E 1 HETATM 28 C C3C HEC . . . O 10 26.366 1.76 12.94 1 1 ? C3C HEC 80 E 1 HETATM 29 C C4C HEC . . . O 10 26.683 2.954 13.701 1 1 ? C4C HEC 80 E 1 HETATM 30 C CMC HEC . . . O 10 27.369 0.862 10.745 1 1 ? CMC HEC 80 E 1 HETATM 31 C CAC HEC . . . O 10 25.099 0.897 13.02 1 1 ? CAC HEC 80 E 1 HETATM 32 C CBC HEC . . . O 10 25.43 -0.508 13.509 1 1 ? CBC HEC 80 E 1 HETATM 33 N ND HEC . . . O 10 27.56 5.189 15.387 1 1 ? ND HEC 80 E 1 HETATM 34 C C1D HEC . . . O 10 26.903 4.073 15.846 1 1 ? C1D HEC 80 E 1 HETATM 35 C C2D HEC . . . O 10 26.806 4.059 17.276 1 1 ? C2D HEC 80 E 1 HETATM 36 C C3D HEC . . . O 10 27.506 5.124 17.716 1 1 ? C3D HEC 80 E 1 HETATM 37 C C4D HEC . . . O 10 27.883 5.875 16.533 1 1 ? C4D HEC 80 E 1 HETATM 38 C CMD HEC . . . O 10 25.988 3.086 18.108 1 1 ? CMD HEC 80 E 1 HETATM 39 C CAD HEC . . . O 10 27.951 5.372 19.151 1 1 ? CAD HEC 80 E 1 HETATM 40 C CBD HEC . . . O 10 29.315 4.771 19.516 1 1 ? CBD HEC 80 E 1 HETATM 41 C CGD HEC . . . O 10 29.365 3.244 19.538 1 1 ? CGD HEC 80 E 1 HETATM 42 O O1D HEC . . . O 10 28.631 2.637 20.344 1 1 ? O1D HEC 80 E 1 HETATM 43 O O2D HEC . . . O 10 30.209 2.676 18.816 1 1 ? O2D HEC 80 E 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #