data_1E0J # _model_server_result.job_id D53Pvys_VG2Lm-uSruPSZQ _model_server_result.datetime_utc '2025-03-27 10:31:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":700}' # _entry.id 1E0J # _exptl.entry_id 1E0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1E0J _cell.length_a 119.18 _cell.length_b 119.18 _cell.length_c 283.42 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PQS hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J 1 1,2 D,E,F,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 283.42 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 59 A SER 319 1_555 H MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc2 G O2G ANP . A ANP 700 1_555 H MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 G O1B ANP . A ANP 700 1_555 H MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 G N3B ANP . A ANP 700 1_555 H MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc5 B OG SER 59 B SER 319 1_555 J MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 I O2G ANP . B ANP 700 1_555 J MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc7 I O1B ANP . B ANP 700 1_555 J MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 D OG SER 59 D SER 319 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc9 K O1B ANP . D ANP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc10 K O2G ANP . D ANP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc11 K N3B ANP . D ANP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc12 E OG SER 59 E SER 319 1_555 N MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc13 M O2G ANP . E ANP 700 1_555 N MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc14 M O1B ANP . E ANP 700 1_555 N MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1E0J _atom_sites.fract_transf_matrix[1][1] 0.008391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 700 700 ANP ANP . H 3 MG A 1 701 701 MG MG . I 2 ANP B 1 700 700 ANP ANP . J 3 MG B 1 701 701 MG MG . K 2 ANP D 1 700 700 ANP ANP . L 3 MG D 1 701 701 MG MG . M 2 ANP E 1 700 700 ANP ANP . N 3 MG E 1 701 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . M 2 45.235 41.849 167.499 1 55.42 ? PG ANP 700 E 1 HETATM 2 O O1G ANP . . . M 2 44.994 40.916 166.37 1 55.75 ? O1G ANP 700 E 1 HETATM 3 O O2G ANP . . . M 2 46.684 42.164 167.82 1 50.86 ? O2G ANP 700 E 1 HETATM 4 O O3G ANP . . . M 2 44.29 43.092 167.549 1 51.75 ? O3G ANP 700 E 1 HETATM 5 P PB ANP . . . M 2 44.99 39.454 169.19 1 53.43 ? PB ANP 700 E 1 HETATM 6 O O1B ANP . . . M 2 46.376 39.292 169.835 1 50.26 ? O1B ANP 700 E 1 HETATM 7 O O2B ANP . . . M 2 44.581 38.553 168.073 1 45.58 ? O2B ANP 700 E 1 HETATM 8 N N3B ANP . . . M 2 44.683 40.985 168.703 1 52.13 ? N3B ANP 700 E 1 HETATM 9 P PA ANP . . . M 2 44.052 38.38 171.687 1 44.49 ? PA ANP 700 E 1 HETATM 10 O O1A ANP . . . M 2 44.767 37.053 171.351 1 45.67 ? O1A ANP 700 E 1 HETATM 11 O O2A ANP . . . M 2 44.591 39.246 172.791 1 47.37 ? O2A ANP 700 E 1 HETATM 12 O O3A ANP . . . M 2 43.961 39.282 170.371 1 43.34 ? O3A ANP 700 E 1 HETATM 13 O O5' ANP . . . M 2 42.521 38.133 172.01 1 46.15 ? O5' ANP 700 E 1 HETATM 14 C C5' ANP . . . M 2 41.635 39.235 172.272 1 36.72 ? C5' ANP 700 E 1 HETATM 15 C C4' ANP . . . M 2 40.635 38.832 173.367 1 33.02 ? C4' ANP 700 E 1 HETATM 16 O O4' ANP . . . M 2 39.91 37.657 172.916 1 33.76 ? O4' ANP 700 E 1 HETATM 17 C C3' ANP . . . M 2 41.268 38.453 174.738 1 35.56 ? C3' ANP 700 E 1 HETATM 18 O O3' ANP . . . M 2 40.405 38.92 175.831 1 37.33 ? O3' ANP 700 E 1 HETATM 19 C C2' ANP . . . M 2 41.327 36.923 174.678 1 35.74 ? C2' ANP 700 E 1 HETATM 20 O O2' ANP . . . M 2 41.315 36.285 175.988 1 36.84 ? O2' ANP 700 E 1 HETATM 21 C C1' ANP . . . M 2 40.059 36.596 173.849 1 38.15 ? C1' ANP 700 E 1 HETATM 22 N N9 ANP . . . M 2 40.121 35.342 173.047 1 35.86 ? N9 ANP 700 E 1 HETATM 23 C C8 ANP . . . M 2 41.26 34.676 172.585 1 34.96 ? C8 ANP 700 E 1 HETATM 24 N N7 ANP . . . M 2 40.992 33.58 171.895 1 34.74 ? N7 ANP 700 E 1 HETATM 25 C C5 ANP . . . M 2 39.591 33.51 171.903 1 36.61 ? C5 ANP 700 E 1 HETATM 26 C C6 ANP . . . M 2 38.685 32.572 171.354 1 35.36 ? C6 ANP 700 E 1 HETATM 27 N N6 ANP . . . M 2 39.066 31.48 170.66 1 38.57 ? N6 ANP 700 E 1 HETATM 28 N N1 ANP . . . M 2 37.327 32.799 171.552 1 35.48 ? N1 ANP 700 E 1 HETATM 29 C C2 ANP . . . M 2 36.941 33.891 172.255 1 36.01 ? C2 ANP 700 E 1 HETATM 30 N N3 ANP . . . M 2 37.704 34.84 172.818 1 34.49 ? N3 ANP 700 E 1 HETATM 31 C C4 ANP . . . M 2 39.044 34.581 172.614 1 33.28 ? C4 ANP 700 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #