data_1E0O # _model_server_result.job_id rkw0pri71ovoIwBq-8mKsg _model_server_result.datetime_utc '2024-11-15 08:47:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 1E0O # _exptl.entry_id 1E0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1E0O _cell.length_a 195.9 _cell.length_b 195.9 _cell.length_c 68.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N ? 4 O N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 IDS SGN C1 O1 . O4 HO4 . sing 2 ? 3 3 2 SGN IDS C1 O1 . O4 HO4 . sing 3 ? 3 4 3 IDS SGN C1 O1 . O4 HO4 . sing 4 ? 3 5 4 SGN IDS C1 O1 . O4 HO4 . sing 5 ? 3 6 5 IDS SGN C1 O1 . O4 HO4 . sing 6 ? 3 7 6 SGN IDS C1 O1 . O4 HO4 . sing 7 ? 3 8 7 IDS SGN C1 O1 . O4 HO4 . sing 8 ? 3 9 8 SGN IDS C1 O1 . O4 HO4 . sing 9 ? 3 10 9 IDS SGN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E SGN 1 E 1 SGN E 1 SGN 3 n E IDS 2 E 2 IDS E 2 IDS 3 n E SGN 3 E 3 SGN E 3 SGN 3 n E IDS 4 E 4 IDS E 4 IDS 3 n E SGN 5 E 5 SGN E 5 SGN 3 n E IDS 6 E 6 IDS E 6 IDS 3 n E SGN 7 E 7 SGN E 7 SGN 3 n E IDS 8 E 8 IDS E 8 IDS 3 n E SGN 9 E 9 SGN E 9 SGN 3 n E IDS 10 E 10 IDS E 10 IDS # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 32 B CYS 179 1_555 B SG CYS 84 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 131 B CYS 278 1_555 B SG CYS 195 B CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 D SG CYS 32 D CYS 179 1_555 D SG CYS 84 D CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 131 D CYS 278 1_555 D SG CYS 195 D CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E O4 SGN . E SGN 1 1_555 E C1 IDS . E IDS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 E O4 IDS . E IDS 2 1_555 E C1 SGN . E SGN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 E O4 SGN . E SGN 3 1_555 E C1 IDS . E IDS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 E O4 IDS . E IDS 4 1_555 E C1 SGN . E SGN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale5 E O4 SGN . E SGN 5 1_555 E C1 IDS . E IDS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale6 E O4 IDS . E IDS 6 1_555 E C1 SGN . E SGN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale7 E O4 SGN . E SGN 7 1_555 E C1 IDS . E IDS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale8 E O4 IDS . E IDS 8 1_555 E C1 SGN . E SGN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale9 E O4 SGN . E SGN 9 1_555 E C1 IDS . E IDS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 F NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 F NI NI . A NI 201 1_555 P O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc3 F NI NI . A NI 201 1_555 B NE2 HIS 107 B HIS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 B NE2 HIS 98 B HIS 245 1_555 G NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc5 B OD1 ASP 100 B ASP 247 1_555 G NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 B NE2 HIS 140 B HIS 287 1_555 H NI NI . B NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc7 H NI NI . B NI 402 1_555 Q O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc8 H NI NI . B NI 402 5_564 D NE2 HIS 140 D HIS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 C NE2 HIS 93 C HIS 93 1_555 K NI NI . C NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 K NI NI . C NI 203 1_555 D NE2 HIS 107 D HIS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc11 K NI NI . C NI 203 1_555 S O HOH . D HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc12 K NI NI . C NI 203 1_555 S O HOH . D HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc13 D NE2 HIS 98 D HIS 245 1_555 O NI NI . D NI 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc14 D OD1 ASP 100 D ASP 247 1_555 O NI NI . D NI 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 O NI NI . D NI 404 1_555 S O HOH . D HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1E0O _atom_sites.fract_transf_matrix[1][1] 0.005105 _atom_sites.fract_transf_matrix[1][2] 0.002947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NI A 1 201 904 NI NI . G 4 NI B 1 401 902 NI NI . H 4 NI B 1 402 903 NI NI . I 5 SO4 C 1 201 800 SO4 SO4 . J 5 SO4 C 1 202 803 SO4 SO4 . K 4 NI C 1 203 900 NI NI . L 5 SO4 D 1 401 804 SO4 SO4 . M 5 SO4 D 1 402 801 SO4 SO4 . N 5 SO4 D 1 403 802 SO4 SO4 . O 4 NI D 1 404 901 NI NI . P 6 HOH A 1 301 2007 HOH HOH . P 6 HOH A 2 302 2001 HOH HOH . P 6 HOH A 3 303 2006 HOH HOH . P 6 HOH A 4 304 2002 HOH HOH . P 6 HOH A 5 305 2003 HOH HOH . P 6 HOH A 6 306 2005 HOH HOH . P 6 HOH A 7 307 2004 HOH HOH . Q 6 HOH B 1 501 2003 HOH HOH . Q 6 HOH B 2 502 2005 HOH HOH . Q 6 HOH B 3 503 2002 HOH HOH . Q 6 HOH B 4 504 2008 HOH HOH . Q 6 HOH B 5 505 2007 HOH HOH . Q 6 HOH B 6 506 2004 HOH HOH . Q 6 HOH B 7 507 2009 HOH HOH . Q 6 HOH B 8 508 2001 HOH HOH . Q 6 HOH B 9 509 2011 HOH HOH . Q 6 HOH B 10 510 2006 HOH HOH . Q 6 HOH B 11 511 2012 HOH HOH . Q 6 HOH B 12 512 2010 HOH HOH . R 6 HOH C 1 301 2002 HOH HOH . R 6 HOH C 2 302 2001 HOH HOH . R 6 HOH C 3 303 2005 HOH HOH . R 6 HOH C 4 304 2003 HOH HOH . R 6 HOH C 5 305 2006 HOH HOH . R 6 HOH C 6 306 2004 HOH HOH . R 6 HOH C 7 307 2007 HOH HOH . S 6 HOH D 1 501 2007 HOH HOH . S 6 HOH D 2 502 2013 HOH HOH . S 6 HOH D 3 503 2004 HOH HOH . S 6 HOH D 4 504 2010 HOH HOH . S 6 HOH D 5 505 2003 HOH HOH . S 6 HOH D 6 506 2015 HOH HOH . S 6 HOH D 7 507 2011 HOH HOH . S 6 HOH D 8 508 2005 HOH HOH . S 6 HOH D 9 509 2008 HOH HOH . S 6 HOH D 10 510 2001 HOH HOH . S 6 HOH D 11 511 2006 HOH HOH . S 6 HOH D 12 512 2009 HOH HOH . S 6 HOH D 13 513 2002 HOH HOH . S 6 HOH D 14 514 2014 HOH HOH . S 6 HOH D 15 515 2012 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 51.837 _atom_site.Cartn_y 89.619 _atom_site.Cartn_z 21.289 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #