data_1E0P # _model_server_result.job_id J_lDYlNCdVrTStnWFXyrIA _model_server_result.datetime_utc '2024-12-20 01:45:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1E0P # _exptl.entry_id 1E0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1E0P _cell.length_a 60.96 _cell.length_b 60.96 _cell.length_c 109.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.48 52.792909 0 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.48 52.792909 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 212 A LYS 216 1_555 B C15 RET . A RET 300 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.308 ? covale ? covale2 A NZ LYS 212 A LYS 216 1_555 B C15 RET . A RET 300 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.283 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 243 n n C1 C6 RET sing 244 n n C1 C16 RET sing 245 n n C1 C17 RET sing 246 n n C2 C3 RET sing 247 n n C2 H21 RET sing 248 n n C2 H22 RET sing 249 n n C3 C4 RET sing 250 n n C3 H31 RET sing 251 n n C3 H32 RET sing 252 n n C4 C5 RET sing 253 n n C4 H41 RET sing 254 n n C4 H42 RET sing 255 n n C5 C6 RET doub 256 n n C5 C18 RET sing 257 n n C6 C7 RET sing 258 n n C7 C8 RET doub 259 e n C7 H7 RET sing 260 n n C8 C9 RET sing 261 n n C8 H8 RET sing 262 n n C9 C10 RET doub 263 e n C9 C19 RET sing 264 n n C10 C11 RET sing 265 n n C10 H10 RET sing 266 n n C11 C12 RET doub 267 e n C11 H11 RET sing 268 n n C12 C13 RET sing 269 n n C12 H12 RET sing 270 n n C13 C14 RET doub 271 e n C13 C20 RET sing 272 n n C14 C15 RET sing 273 n n C14 H14 RET sing 274 n n C15 O1 RET doub 275 n n C15 H15 RET sing 276 n n C16 H161 RET sing 277 n n C16 H162 RET sing 278 n n C16 H163 RET sing 279 n n C17 H171 RET sing 280 n n C17 H172 RET sing 281 n n C17 H173 RET sing 282 n n C18 H181 RET sing 283 n n C18 H182 RET sing 284 n n C18 H183 RET sing 285 n n C19 H191 RET sing 286 n n C19 H192 RET sing 287 n n C19 H193 RET sing 288 n n C20 H201 RET sing 289 n n C20 H202 RET sing 290 n n C20 H203 RET sing 291 n n # _atom_sites.entry_id 1E0P _atom_sites.fract_transf_matrix[1][1] 0.016404 _atom_sites.fract_transf_matrix[1][2] 0.009471 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 15.148 45.239 -0.389 0.7 32.18 ? C1 RET 300 A 1 HETATM 2 C C1 RET . B . B 2 14.888 45.215 -0.297 0.3 32.18 ? C1 RET 300 A 1 HETATM 3 C C2 RET . A . B 2 14.712 46.234 -1.497 0.7 33.3 ? C2 RET 300 A 1 HETATM 4 C C2 RET . B . B 2 14.19 46.181 -1.305 0.3 33.3 ? C2 RET 300 A 1 HETATM 5 C C3 RET . A . B 2 15.274 47.603 -1.396 0.7 33.24 ? C3 RET 300 A 1 HETATM 6 C C3 RET . B . B 2 14.864 47.536 -1.405 0.3 33.24 ? C3 RET 300 A 1 HETATM 7 C C4 RET . A . B 2 14.99 48.203 -0.046 0.7 32.61 ? C4 RET 300 A 1 HETATM 8 C C4 RET . B . B 2 14.926 48.25 -0.061 0.3 32.61 ? C4 RET 300 A 1 HETATM 9 C C5 RET . A . B 2 15.35 47.311 1.13 0.7 31.95 ? C5 RET 300 A 1 HETATM 10 C C5 RET . B . B 2 15.272 47.329 1.129 0.3 31.95 ? C5 RET 300 A 1 HETATM 11 C C6 RET . A . B 2 15.453 45.933 1.016 0.7 32.26 ? C6 RET 300 A 1 HETATM 12 C C6 RET . B . B 2 15.269 45.937 1.054 0.3 32.26 ? C6 RET 300 A 1 HETATM 13 C C7 RET . A . B 2 15.854 45.166 2.203 0.7 31.38 ? C7 RET 300 A 1 HETATM 14 C C7 RET . B . B 2 15.677 45.178 2.254 0.3 31.38 ? C7 RET 300 A 1 HETATM 15 C C8 RET . A . B 2 16.035 43.831 2.455 0.7 31.86 ? C8 RET 300 A 1 HETATM 16 C C8 RET . B . B 2 15.901 43.913 2.683 0.3 31.86 ? C8 RET 300 A 1 HETATM 17 C C9 RET . A . B 2 16.49 43.241 3.705 0.7 31.83 ? C9 RET 300 A 1 HETATM 18 C C9 RET . B . B 2 16.422 43.361 3.891 0.3 31.83 ? C9 RET 300 A 1 HETATM 19 C C10 RET . A . B 2 16.585 41.915 3.743 0.7 31.58 ? C10 RET 300 A 1 HETATM 20 C C10 RET . B . B 2 16.522 42.015 3.765 0.3 31.58 ? C10 RET 300 A 1 HETATM 21 C C11 RET . A . B 2 17.051 41.099 4.855 0.7 31.36 ? C11 RET 300 A 1 HETATM 22 C C11 RET . B . B 2 17.06 41.106 4.708 0.3 31.36 ? C11 RET 300 A 1 HETATM 23 C C12 RET . A . B 2 17.102 39.772 4.884 0.7 30.23 ? C12 RET 300 A 1 HETATM 24 C C12 RET . B . B 2 17.141 39.789 4.545 0.3 30.23 ? C12 RET 300 A 1 HETATM 25 C C13 RET . A . B 2 17.582 39.002 6.024 0.7 31.16 ? C13 RET 300 A 1 HETATM 26 C C13 RET . B . B 2 17.601 38.791 5.463 0.3 31.16 ? C13 RET 300 A 1 HETATM 27 C C14 RET . A . B 2 17.572 37.649 6.057 0.7 31.01 ? C14 RET 300 A 1 HETATM 28 C C14 RET . B . B 2 17.46 37.567 4.902 0.3 31.01 ? C14 RET 300 A 1 HETATM 29 C C15 RET . A . B 2 17.143 36.681 5.127 0.7 31.11 ? C15 RET 300 A 1 HETATM 30 C C15 RET . B . B 2 17.698 36.286 5.322 0.3 31.11 ? C15 RET 300 A 1 HETATM 31 C C16 RET . A . B 2 13.957 44.268 -0.301 0.7 31.91 ? C16 RET 300 A 1 HETATM 32 C C16 RET . B . B 2 13.857 44.098 -0.246 0.3 31.91 ? C16 RET 300 A 1 HETATM 33 C C17 RET . A . B 2 16.407 44.493 -0.909 0.7 32.62 ? C17 RET 300 A 1 HETATM 34 C C17 RET . B . B 2 16.183 44.655 -0.969 0.3 32.62 ? C17 RET 300 A 1 HETATM 35 C C18 RET . A . B 2 15.505 48.1 2.415 0.7 31.76 ? C18 RET 300 A 1 HETATM 36 C C18 RET . B . B 2 15.56 48.257 2.291 0.3 31.76 ? C18 RET 300 A 1 HETATM 37 C C19 RET . A . B 2 16.833 44.133 4.887 0.7 31.8 ? C19 RET 300 A 1 HETATM 38 C C19 RET . B . B 2 16.864 44.255 5.024 0.3 31.8 ? C19 RET 300 A 1 HETATM 39 C C20 RET . A . B 2 18.113 39.775 7.23 0.7 29.73 ? C20 RET 300 A 1 HETATM 40 C C20 RET . B . B 2 18.093 39.109 6.856 0.3 29.73 ? C20 RET 300 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 948 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 40 #