data_1E12
#
_model_server_result.job_id            U3Nyrdi7giEHOfVVJyT5eQ 
_model_server_result.datetime_utc      '2024-11-02 15:21:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1e12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":705}' 
#
_entry.id    1E12 
#
_exptl.entry_id    1E12 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1E12 
_cell.length_a            67.3 
_cell.length_b            67.3 
_cell.length_c            209.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1E12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -33.65 58.28351 0 
3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 33.65 58.28351 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 221 A LYS 242 1_555 O C15 RET . A RET 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
metalc ? metalc1 A O GLY 62 A GLY 83 1_555 C K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc2 A O VAL 65 A VAL 86 1_555 C K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 237 n n 
C10 C9 OLC doub 238 n n 
C10 C11 OLC sing 239 n n 
C9 C8 OLC sing 240 n n 
C17 C16 OLC sing 241 z n 
C11 C12 OLC sing 242 n n 
C8 C7 OLC sing 243 n n 
C24 C22 OLC sing 244 n n 
C24 O25 OLC sing 245 n n 
C16 C15 OLC sing 246 n n 
C12 C13 OLC sing 247 n n 
C7 C6 OLC sing 248 n n 
C15 C14 OLC sing 249 n n 
C13 C14 OLC sing 250 n n 
C6 C5 OLC sing 251 n n 
C5 C4 OLC sing 252 n n 
C4 C3 OLC sing 253 n n 
C3 C2 OLC sing 254 n n 
C2 C1 OLC sing 255 n n 
C21 C22 OLC sing 256 n n 
C21 O20 OLC sing 257 n n 
C1 O19 OLC doub 258 n n 
C1 O20 OLC sing 259 n n 
C22 O23 OLC sing 260 n n 
C18 H18 OLC sing 261 n n 
C18 H18A OLC sing 262 n n 
C18 H18B OLC sing 263 n n 
C10 H10 OLC sing 264 n n 
C9 H9 OLC sing 265 n n 
C17 H17 OLC sing 266 n n 
C17 H17A OLC sing 267 n n 
C11 H11 OLC sing 268 n n 
C11 H11A OLC sing 269 n n 
C8 H8 OLC sing 270 n n 
C8 H8A OLC sing 271 n n 
C24 H24 OLC sing 272 n n 
C24 H24A OLC sing 273 n n 
C16 H16 OLC sing 274 n n 
C16 H16A OLC sing 275 n n 
C12 H12 OLC sing 276 n n 
C12 H12A OLC sing 277 n n 
C7 H7 OLC sing 278 n n 
C7 H7A OLC sing 279 n n 
C15 H15 OLC sing 280 n n 
C15 H15A OLC sing 281 n n 
C13 H13 OLC sing 282 n n 
C13 H13A OLC sing 283 n n 
C6 H6 OLC sing 284 n n 
C6 H6A OLC sing 285 n n 
C14 H14 OLC sing 286 n n 
C14 H14A OLC sing 287 n n 
C5 H5 OLC sing 288 n n 
C5 H5A OLC sing 289 n n 
C4 H4 OLC sing 290 n n 
C4 H4A OLC sing 291 n n 
C3 H3 OLC sing 292 n n 
C3 H3A OLC sing 293 n n 
C2 H2 OLC sing 294 n n 
C2 H2A OLC sing 295 n n 
C21 H21 OLC sing 296 n n 
C21 H21A OLC sing 297 n n 
C22 H22 OLC sing 298 n n 
O25 HO25 OLC sing 299 n n 
O23 HO23 OLC sing 300 n n 
#
_atom_sites.entry_id                     1E12 
_atom_sites.fract_transf_matrix[1][1]    0.014859 
_atom_sites.fract_transf_matrix[1][2]    0.008579 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 501 501 CL CL . 
C 3 K A 1 503 503 K K . 
D 4 PLM A 1 700 700 PLM PLM . 
E 5 OLC A 1 701 701 OLC OLC . 
F 5 OLC A 1 703 703 OLC OLC . 
G 5 OLC A 1 705 705 OLC OLC . 
H 5 OLC A 1 707 707 OLC OLC . 
I 5 OLC A 1 709 709 OLC OLC . 
J 5 OLC A 1 711 711 OLC OLC . 
K 5 OLC A 1 713 713 OLC OLC . 
L 5 OLC A 1 715 715 OLC OLC . 
M 5 OLC A 1 717 717 OLC OLC . 
N 5 OLC A 1 719 719 OLC OLC . 
O 6 RET A 1 999 999 RET RET . 
P 7 HOH A 1 2001 2001 HOH HOH . 
P 7 HOH A 2 2002 2002 HOH HOH . 
P 7 HOH A 3 2003 2003 HOH HOH . 
P 7 HOH A 4 2004 2004 HOH HOH . 
P 7 HOH A 5 2005 2005 HOH HOH . 
P 7 HOH A 6 2006 2006 HOH HOH . 
P 7 HOH A 7 2007 2007 HOH HOH . 
P 7 HOH A 8 2008 2008 HOH HOH . 
P 7 HOH A 9 2009 2009 HOH HOH . 
P 7 HOH A 10 2010 2010 HOH HOH . 
P 7 HOH A 11 2011 2011 HOH HOH . 
P 7 HOH A 12 2012 2012 HOH HOH . 
P 7 HOH A 13 2013 2013 HOH HOH . 
P 7 HOH A 14 2014 2014 HOH HOH . 
P 7 HOH A 15 2015 2015 HOH HOH . 
P 7 HOH A 16 2016 2016 HOH HOH . 
P 7 HOH A 17 2017 2017 HOH HOH . 
P 7 HOH A 18 2018 2018 HOH HOH . 
P 7 HOH A 19 2019 2019 HOH HOH . 
P 7 HOH A 20 2020 2020 HOH HOH . 
P 7 HOH A 21 2021 2021 HOH HOH . 
P 7 HOH A 22 2022 2022 HOH HOH . 
P 7 HOH A 23 2023 2023 HOH HOH . 
P 7 HOH A 24 2024 2024 HOH HOH . 
P 7 HOH A 25 2025 2025 HOH HOH . 
P 7 HOH A 26 2026 2026 HOH HOH . 
P 7 HOH A 27 2027 2027 HOH HOH . 
P 7 HOH A 28 2028 2028 HOH HOH . 
P 7 HOH A 29 2029 2029 HOH HOH . 
P 7 HOH A 30 2030 2030 HOH HOH . 
P 7 HOH A 31 2031 2031 HOH HOH . 
P 7 HOH A 32 2032 2032 HOH HOH . 
P 7 HOH A 33 2033 2033 HOH HOH . 
P 7 HOH A 34 2034 2034 HOH HOH . 
P 7 HOH A 35 2035 2035 HOH HOH . 
P 7 HOH A 36 2036 2036 HOH HOH . 
P 7 HOH A 37 2037 2037 HOH HOH . 
P 7 HOH A 38 2038 2038 HOH HOH . 
P 7 HOH A 39 2039 2039 HOH HOH . 
P 7 HOH A 40 2040 2040 HOH HOH . 
P 7 HOH A 41 2041 2041 HOH HOH . 
P 7 HOH A 42 2042 2042 HOH HOH . 
P 7 HOH A 43 2043 2043 HOH HOH . 
P 7 HOH A 44 2044 2044 HOH HOH . 
P 7 HOH A 45 2045 2045 HOH HOH . 
P 7 HOH A 46 2046 2046 HOH HOH . 
P 7 HOH A 47 2047 2047 HOH HOH . 
P 7 HOH A 48 2048 2048 HOH HOH . 
P 7 HOH A 49 2049 2049 HOH HOH . 
P 7 HOH A 50 2050 2050 HOH HOH . 
P 7 HOH A 51 2051 2051 HOH HOH . 
P 7 HOH A 52 2052 2052 HOH HOH . 
P 7 HOH A 53 2053 2053 HOH HOH . 
P 7 HOH A 54 2054 2054 HOH HOH . 
P 7 HOH A 55 2055 2055 HOH HOH . 
P 7 HOH A 56 2056 2056 HOH HOH . 
P 7 HOH A 57 2057 2057 HOH HOH . 
P 7 HOH A 58 2058 2058 HOH HOH . 
P 7 HOH A 59 2059 2059 HOH HOH . 
P 7 HOH A 60 2060 2060 HOH HOH . 
P 7 HOH A 61 2061 2061 HOH HOH . 
P 7 HOH A 62 2062 2062 HOH HOH . 
P 7 HOH A 63 2063 2063 HOH HOH . 
P 7 HOH A 64 2064 2064 HOH HOH . 
P 7 HOH A 65 2065 2065 HOH HOH . 
P 7 HOH A 66 2066 2066 HOH HOH . 
P 7 HOH A 67 2067 2067 HOH HOH . 
P 7 HOH A 68 2068 2068 HOH HOH . 
P 7 HOH A 69 2069 2069 HOH HOH . 
P 7 HOH A 70 2070 2070 HOH HOH . 
P 7 HOH A 71 2071 2071 HOH HOH . 
P 7 HOH A 72 2072 2072 HOH HOH . 
P 7 HOH A 73 2073 2073 HOH HOH . 
P 7 HOH A 74 2074 2074 HOH HOH . 
P 7 HOH A 75 2075 2075 HOH HOH . 
P 7 HOH A 76 2076 2076 HOH HOH . 
P 7 HOH A 77 2077 2077 HOH HOH . 
P 7 HOH A 78 2078 2078 HOH HOH . 
P 7 HOH A 79 2079 2079 HOH HOH . 
P 7 HOH A 80 2080 2080 HOH HOH . 
P 7 HOH A 81 2081 2081 HOH HOH . 
P 7 HOH A 82 2082 2082 HOH HOH . 
P 7 HOH A 83 2083 2083 HOH HOH . 
P 7 HOH A 84 2084 2084 HOH HOH . 
P 7 HOH A 85 2085 2085 HOH HOH . 
P 7 HOH A 86 2086 2086 HOH HOH . 
P 7 HOH A 87 2087 2087 HOH HOH . 
P 7 HOH A 88 2088 2088 HOH HOH . 
P 7 HOH A 89 2089 2089 HOH HOH . 
P 7 HOH A 90 2090 2090 HOH HOH . 
P 7 HOH A 91 2091 2091 HOH HOH . 
P 7 HOH A 92 2092 2092 HOH HOH . 
P 7 HOH A 93 2093 2093 HOH HOH . 
P 7 HOH A 94 2094 2094 HOH HOH . 
P 7 HOH A 95 2095 2095 HOH HOH . 
P 7 HOH A 96 2096 2096 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . G 5 29.466 28.137 82.211 0 62.71 ? C18 OLC 705 A 1 
HETATM 2 C C10 OLC . . . G 5 32.702 25.679 73.699 1 63.19 ? C10 OLC 705 A 1 
HETATM 3 C C9 OLC . . . G 5 32.701 24.961 72.547 1 63.1 ? C9 OLC 705 A 1 
HETATM 4 C C17 OLC . . . G 5 29.286 28.026 80.695 0 62.78 ? C17 OLC 705 A 1 
HETATM 5 C C11 OLC . . . G 5 32.394 27.172 73.884 1 63.06 ? C11 OLC 705 A 1 
HETATM 6 C C8 OLC . . . G 5 32.378 25.454 71.129 1 63.05 ? C8 OLC 705 A 1 
HETATM 7 C C24 OLC . . . G 5 29.621 27.403 59.633 0 60.99 ? C24 OLC 705 A 1 
HETATM 8 C C16 OLC . . . G 5 30.578 27.75 79.938 0 62.82 ? C16 OLC 705 A 1 
HETATM 9 C C12 OLC . . . G 5 32.544 27.644 75.322 1 63.03 ? C12 OLC 705 A 1 
HETATM 10 C C7 OLC . . . G 5 32.561 24.381 70.037 1 62.84 ? C7 OLC 705 A 1 
HETATM 11 C C15 OLC . . . G 5 30.321 27.718 78.44 0 62.85 ? C15 OLC 705 A 1 
HETATM 12 C C13 OLC . . . G 5 31.319 27.339 76.178 0 62.93 ? C13 OLC 705 A 1 
HETATM 13 C C6 OLC . . . G 5 32.236 25.025 68.683 1 62.68 ? C6 OLC 705 A 1 
HETATM 14 C C14 OLC . . . G 5 31.616 27.558 77.655 0 62.89 ? C14 OLC 705 A 1 
HETATM 15 C C5 OLC . . . G 5 32.353 24.112 67.453 1 62.45 ? C5 OLC 705 A 1 
HETATM 16 C C4 OLC . . . G 5 31.913 24.92 66.222 1 62.23 ? C4 OLC 705 A 1 
HETATM 17 C C3 OLC . . . G 5 31.897 24.132 64.905 1 61.99 ? C3 OLC 705 A 1 
HETATM 18 C C2 OLC . . . G 5 31.425 24.991 63.723 1 61.84 ? C2 OLC 705 A 1 
HETATM 19 C C21 OLC . . . G 5 29.39 25.679 61.433 0 61.16 ? C21 OLC 705 A 1 
HETATM 20 C C1 OLC . . . G 5 29.951 25.426 63.753 1 61.63 ? C1 OLC 705 A 1 
HETATM 21 C C22 OLC . . . G 5 28.632 26.648 60.522 0 61.05 ? C22 OLC 705 A 1 
HETATM 22 O O25 OLC . . . G 5 30.313 26.517 58.772 0 60.91 ? O25 OLC 705 A 1 
HETATM 23 O O23 OLC . . . G 5 27.695 25.93 59.709 0 61.05 ? O23 OLC 705 A 1 
HETATM 24 O O20 OLC . . . G 5 29.666 26.304 62.676 0 61.35 ? O20 OLC 705 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#