data_1E12 # _model_server_result.job_id 8geHkGGF8zRYF1Z1hmEJaA _model_server_result.datetime_utc '2024-11-02 15:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":999}' # _entry.id 1E12 # _exptl.entry_id 1E12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1E12 _cell.length_a 67.3 _cell.length_b 67.3 _cell.length_c 209.2 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -33.65 58.28351 0 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 33.65 58.28351 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 221 A LYS 242 1_555 O C15 RET . A RET 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? metalc ? metalc1 A O GLY 62 A GLY 83 1_555 C K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc2 A O VAL 65 A VAL 86 1_555 C K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 390 n n C1 C6 RET sing 391 n n C1 C16 RET sing 392 n n C1 C17 RET sing 393 n n C2 C3 RET sing 394 n n C2 H21 RET sing 395 n n C2 H22 RET sing 396 n n C3 C4 RET sing 397 n n C3 H31 RET sing 398 n n C3 H32 RET sing 399 n n C4 C5 RET sing 400 n n C4 H41 RET sing 401 n n C4 H42 RET sing 402 n n C5 C6 RET doub 403 n n C5 C18 RET sing 404 n n C6 C7 RET sing 405 n n C7 C8 RET doub 406 e n C7 H7 RET sing 407 n n C8 C9 RET sing 408 n n C8 H8 RET sing 409 n n C9 C10 RET doub 410 e n C9 C19 RET sing 411 n n C10 C11 RET sing 412 n n C10 H10 RET sing 413 n n C11 C12 RET doub 414 e n C11 H11 RET sing 415 n n C12 C13 RET sing 416 n n C12 H12 RET sing 417 n n C13 C14 RET doub 418 e n C13 C20 RET sing 419 n n C14 C15 RET sing 420 n n C14 H14 RET sing 421 n n C15 O1 RET doub 422 n n C15 H15 RET sing 423 n n C16 H161 RET sing 424 n n C16 H162 RET sing 425 n n C16 H163 RET sing 426 n n C17 H171 RET sing 427 n n C17 H172 RET sing 428 n n C17 H173 RET sing 429 n n C18 H181 RET sing 430 n n C18 H182 RET sing 431 n n C18 H183 RET sing 432 n n C19 H191 RET sing 433 n n C19 H192 RET sing 434 n n C19 H193 RET sing 435 n n C20 H201 RET sing 436 n n C20 H202 RET sing 437 n n C20 H203 RET sing 438 n n # _atom_sites.entry_id 1E12 _atom_sites.fract_transf_matrix[1][1] 0.014859 _atom_sites.fract_transf_matrix[1][2] 0.008579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 501 CL CL . C 3 K A 1 503 503 K K . D 4 PLM A 1 700 700 PLM PLM . E 5 OLC A 1 701 701 OLC OLC . F 5 OLC A 1 703 703 OLC OLC . G 5 OLC A 1 705 705 OLC OLC . H 5 OLC A 1 707 707 OLC OLC . I 5 OLC A 1 709 709 OLC OLC . J 5 OLC A 1 711 711 OLC OLC . K 5 OLC A 1 713 713 OLC OLC . L 5 OLC A 1 715 715 OLC OLC . M 5 OLC A 1 717 717 OLC OLC . N 5 OLC A 1 719 719 OLC OLC . O 6 RET A 1 999 999 RET RET . P 7 HOH A 1 2001 2001 HOH HOH . P 7 HOH A 2 2002 2002 HOH HOH . P 7 HOH A 3 2003 2003 HOH HOH . P 7 HOH A 4 2004 2004 HOH HOH . P 7 HOH A 5 2005 2005 HOH HOH . P 7 HOH A 6 2006 2006 HOH HOH . P 7 HOH A 7 2007 2007 HOH HOH . P 7 HOH A 8 2008 2008 HOH HOH . P 7 HOH A 9 2009 2009 HOH HOH . P 7 HOH A 10 2010 2010 HOH HOH . P 7 HOH A 11 2011 2011 HOH HOH . P 7 HOH A 12 2012 2012 HOH HOH . P 7 HOH A 13 2013 2013 HOH HOH . P 7 HOH A 14 2014 2014 HOH HOH . P 7 HOH A 15 2015 2015 HOH HOH . P 7 HOH A 16 2016 2016 HOH HOH . P 7 HOH A 17 2017 2017 HOH HOH . P 7 HOH A 18 2018 2018 HOH HOH . P 7 HOH A 19 2019 2019 HOH HOH . P 7 HOH A 20 2020 2020 HOH HOH . P 7 HOH A 21 2021 2021 HOH HOH . P 7 HOH A 22 2022 2022 HOH HOH . P 7 HOH A 23 2023 2023 HOH HOH . P 7 HOH A 24 2024 2024 HOH HOH . P 7 HOH A 25 2025 2025 HOH HOH . P 7 HOH A 26 2026 2026 HOH HOH . P 7 HOH A 27 2027 2027 HOH HOH . P 7 HOH A 28 2028 2028 HOH HOH . P 7 HOH A 29 2029 2029 HOH HOH . P 7 HOH A 30 2030 2030 HOH HOH . P 7 HOH A 31 2031 2031 HOH HOH . P 7 HOH A 32 2032 2032 HOH HOH . P 7 HOH A 33 2033 2033 HOH HOH . P 7 HOH A 34 2034 2034 HOH HOH . P 7 HOH A 35 2035 2035 HOH HOH . P 7 HOH A 36 2036 2036 HOH HOH . P 7 HOH A 37 2037 2037 HOH HOH . P 7 HOH A 38 2038 2038 HOH HOH . P 7 HOH A 39 2039 2039 HOH HOH . P 7 HOH A 40 2040 2040 HOH HOH . P 7 HOH A 41 2041 2041 HOH HOH . P 7 HOH A 42 2042 2042 HOH HOH . P 7 HOH A 43 2043 2043 HOH HOH . P 7 HOH A 44 2044 2044 HOH HOH . P 7 HOH A 45 2045 2045 HOH HOH . P 7 HOH A 46 2046 2046 HOH HOH . P 7 HOH A 47 2047 2047 HOH HOH . P 7 HOH A 48 2048 2048 HOH HOH . P 7 HOH A 49 2049 2049 HOH HOH . P 7 HOH A 50 2050 2050 HOH HOH . P 7 HOH A 51 2051 2051 HOH HOH . P 7 HOH A 52 2052 2052 HOH HOH . P 7 HOH A 53 2053 2053 HOH HOH . P 7 HOH A 54 2054 2054 HOH HOH . P 7 HOH A 55 2055 2055 HOH HOH . P 7 HOH A 56 2056 2056 HOH HOH . P 7 HOH A 57 2057 2057 HOH HOH . P 7 HOH A 58 2058 2058 HOH HOH . P 7 HOH A 59 2059 2059 HOH HOH . P 7 HOH A 60 2060 2060 HOH HOH . P 7 HOH A 61 2061 2061 HOH HOH . P 7 HOH A 62 2062 2062 HOH HOH . P 7 HOH A 63 2063 2063 HOH HOH . P 7 HOH A 64 2064 2064 HOH HOH . P 7 HOH A 65 2065 2065 HOH HOH . P 7 HOH A 66 2066 2066 HOH HOH . P 7 HOH A 67 2067 2067 HOH HOH . P 7 HOH A 68 2068 2068 HOH HOH . P 7 HOH A 69 2069 2069 HOH HOH . P 7 HOH A 70 2070 2070 HOH HOH . P 7 HOH A 71 2071 2071 HOH HOH . P 7 HOH A 72 2072 2072 HOH HOH . P 7 HOH A 73 2073 2073 HOH HOH . P 7 HOH A 74 2074 2074 HOH HOH . P 7 HOH A 75 2075 2075 HOH HOH . P 7 HOH A 76 2076 2076 HOH HOH . P 7 HOH A 77 2077 2077 HOH HOH . P 7 HOH A 78 2078 2078 HOH HOH . P 7 HOH A 79 2079 2079 HOH HOH . P 7 HOH A 80 2080 2080 HOH HOH . P 7 HOH A 81 2081 2081 HOH HOH . P 7 HOH A 82 2082 2082 HOH HOH . P 7 HOH A 83 2083 2083 HOH HOH . P 7 HOH A 84 2084 2084 HOH HOH . P 7 HOH A 85 2085 2085 HOH HOH . P 7 HOH A 86 2086 2086 HOH HOH . P 7 HOH A 87 2087 2087 HOH HOH . P 7 HOH A 88 2088 2088 HOH HOH . P 7 HOH A 89 2089 2089 HOH HOH . P 7 HOH A 90 2090 2090 HOH HOH . P 7 HOH A 91 2091 2091 HOH HOH . P 7 HOH A 92 2092 2092 HOH HOH . P 7 HOH A 93 2093 2093 HOH HOH . P 7 HOH A 94 2094 2094 HOH HOH . P 7 HOH A 95 2095 2095 HOH HOH . P 7 HOH A 96 2096 2096 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . O 6 12.458 26.302 74.537 1 20.08 ? C1 RET 999 A 1 HETATM 2 C C2 RET . . . O 6 13.574 26.623 73.516 1 20.02 ? C2 RET 999 A 1 HETATM 3 C C3 RET . . . O 6 14.415 27.804 74.001 1 20.01 ? C3 RET 999 A 1 HETATM 4 C C4 RET . . . O 6 15.226 27.367 75.233 1 20.19 ? C4 RET 999 A 1 HETATM 5 C C5 RET . . . O 6 14.269 26.825 76.354 1 20.08 ? C5 RET 999 A 1 HETATM 6 C C6 RET . . . O 6 12.989 26.285 76.038 1 20.07 ? C6 RET 999 A 1 HETATM 7 C C7 RET . . . O 6 12.141 25.768 77.181 1 19.94 ? C7 RET 999 A 1 HETATM 8 C C8 RET . . . O 6 10.799 25.428 77.085 1 19.99 ? C8 RET 999 A 1 HETATM 9 C C9 RET . . . O 6 10.1 24.831 78.229 1 20.03 ? C9 RET 999 A 1 HETATM 10 C C10 RET . . . O 6 8.834 24.4 77.996 1 19.45 ? C10 RET 999 A 1 HETATM 11 C C11 RET . . . O 6 7.993 23.788 78.98 1 19.86 ? C11 RET 999 A 1 HETATM 12 C C12 RET . . . O 6 6.692 23.362 78.516 1 19.58 ? C12 RET 999 A 1 HETATM 13 C C13 RET . . . O 6 5.736 22.679 79.31 1 21.1 ? C13 RET 999 A 1 HETATM 14 C C14 RET . . . O 6 4.684 22.452 78.758 1 21.65 ? C14 RET 999 A 1 HETATM 15 C C15 RET . . . O 6 3.44 22.128 79.409 1 23.12 ? C15 RET 999 A 1 HETATM 16 C C16 RET . . . O 6 11.372 27.412 74.401 1 19.95 ? C16 RET 999 A 1 HETATM 17 C C17 RET . . . O 6 11.872 24.981 74.117 1 19.73 ? C17 RET 999 A 1 HETATM 18 C C18 RET . . . O 6 14.776 26.888 77.809 1 19.85 ? C18 RET 999 A 1 HETATM 19 C C19 RET . . . O 6 10.815 24.654 79.623 1 19.8 ? C19 RET 999 A 1 HETATM 20 C C20 RET . . . O 6 6.055 22.286 80.704 1 20.78 ? C20 RET 999 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #