data_1E20 # _model_server_result.job_id UnO-qT5puxDzZSuYyMKC-A _model_server_result.datetime_utc '2024-11-26 01:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 1E20 # _exptl.entry_id 1E20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1E20 _cell.length_a 112.309 _cell.length_b 112.309 _cell.length_c 33.182 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 56.1545 97.262447 0 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 112.309 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 118 A CYS 118 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc1 C NI NI . A NI 802 1_555 E O HOH . A HOH 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc2 C NI NI . A NI 802 1_555 E O HOH . A HOH 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 C NI NI . A NI 802 1_555 E O HOH . A HOH 940 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc4 C NI NI . A NI 802 1_555 E O HOH . A HOH 980 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1E20 _atom_sites.fract_transf_matrix[1][1] 0.008904 _atom_sites.fract_transf_matrix[1][2] 0.005141 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 801 801 FMN FMN . C 3 NI A 1 802 802 NI NI . D 4 BME A 1 803 803 BME BME . E 5 HOH A 1 901 2041 HOH HOH . E 5 HOH A 2 902 2038 HOH HOH . E 5 HOH A 3 903 2003 HOH HOH . E 5 HOH A 4 904 2031 HOH HOH . E 5 HOH A 5 905 2089 HOH HOH . E 5 HOH A 6 906 2061 HOH HOH . E 5 HOH A 7 907 2079 HOH HOH . E 5 HOH A 8 908 2066 HOH HOH . E 5 HOH A 9 909 2004 HOH HOH . E 5 HOH A 10 910 2001 HOH HOH . E 5 HOH A 11 911 2082 HOH HOH . E 5 HOH A 12 912 2050 HOH HOH . E 5 HOH A 13 913 2026 HOH HOH . E 5 HOH A 14 914 2056 HOH HOH . E 5 HOH A 15 915 2019 HOH HOH . E 5 HOH A 16 916 2025 HOH HOH . E 5 HOH A 17 917 2027 HOH HOH . E 5 HOH A 18 918 2064 HOH HOH . E 5 HOH A 19 919 2078 HOH HOH . E 5 HOH A 20 920 2086 HOH HOH . E 5 HOH A 21 921 2049 HOH HOH . E 5 HOH A 22 922 2075 HOH HOH . E 5 HOH A 23 923 2022 HOH HOH . E 5 HOH A 24 924 2034 HOH HOH . E 5 HOH A 25 925 2067 HOH HOH . E 5 HOH A 26 926 2032 HOH HOH . E 5 HOH A 27 927 2043 HOH HOH . E 5 HOH A 28 928 2076 HOH HOH . E 5 HOH A 29 929 2081 HOH HOH . E 5 HOH A 30 930 2002 HOH HOH . E 5 HOH A 31 931 2073 HOH HOH . E 5 HOH A 32 932 2054 HOH HOH . E 5 HOH A 33 933 2005 HOH HOH . E 5 HOH A 34 934 2060 HOH HOH . E 5 HOH A 35 935 2063 HOH HOH . E 5 HOH A 36 936 2074 HOH HOH . E 5 HOH A 37 937 2029 HOH HOH . E 5 HOH A 38 938 2017 HOH HOH . E 5 HOH A 39 939 2083 HOH HOH . E 5 HOH A 40 940 2053 HOH HOH . E 5 HOH A 41 941 2024 HOH HOH . E 5 HOH A 42 942 2023 HOH HOH . E 5 HOH A 43 943 2047 HOH HOH . E 5 HOH A 44 944 2030 HOH HOH . E 5 HOH A 45 945 2071 HOH HOH . E 5 HOH A 46 946 2084 HOH HOH . E 5 HOH A 47 947 2007 HOH HOH . E 5 HOH A 48 948 2070 HOH HOH . E 5 HOH A 49 949 2048 HOH HOH . E 5 HOH A 50 950 2037 HOH HOH . E 5 HOH A 51 951 2044 HOH HOH . E 5 HOH A 52 952 2085 HOH HOH . E 5 HOH A 53 953 2051 HOH HOH . E 5 HOH A 54 954 2059 HOH HOH . E 5 HOH A 55 955 2033 HOH HOH . E 5 HOH A 56 956 2045 HOH HOH . E 5 HOH A 57 957 2072 HOH HOH . E 5 HOH A 58 958 2015 HOH HOH . E 5 HOH A 59 959 2009 HOH HOH . E 5 HOH A 60 960 2068 HOH HOH . E 5 HOH A 61 961 2069 HOH HOH . E 5 HOH A 62 962 2006 HOH HOH . E 5 HOH A 63 963 2014 HOH HOH . E 5 HOH A 64 964 2042 HOH HOH . E 5 HOH A 65 965 2046 HOH HOH . E 5 HOH A 66 966 2055 HOH HOH . E 5 HOH A 67 967 2058 HOH HOH . E 5 HOH A 68 968 2062 HOH HOH . E 5 HOH A 69 969 2077 HOH HOH . E 5 HOH A 70 970 2028 HOH HOH . E 5 HOH A 71 971 2057 HOH HOH . E 5 HOH A 72 972 2036 HOH HOH . E 5 HOH A 73 973 2020 HOH HOH . E 5 HOH A 74 974 2021 HOH HOH . E 5 HOH A 75 975 2088 HOH HOH . E 5 HOH A 76 976 2040 HOH HOH . E 5 HOH A 77 977 2080 HOH HOH . E 5 HOH A 78 978 2065 HOH HOH . E 5 HOH A 79 979 2087 HOH HOH . E 5 HOH A 80 980 2052 HOH HOH . E 5 HOH A 81 981 2039 HOH HOH . E 5 HOH A 82 982 2002 HOH HOH . E 5 HOH A 83 983 2018 HOH HOH . E 5 HOH A 84 984 2011 HOH HOH . E 5 HOH A 85 985 2016 HOH HOH . E 5 HOH A 86 986 2035 HOH HOH . E 5 HOH A 87 987 2010 HOH HOH . E 5 HOH A 88 988 2012 HOH HOH . E 5 HOH A 89 989 2003 HOH HOH . E 5 HOH A 90 990 2013 HOH HOH . E 5 HOH A 91 991 2001 HOH HOH . E 5 HOH A 92 992 2008 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 56.15 _atom_site.Cartn_y 32.42 _atom_site.Cartn_z -17.482 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 82.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #