data_1E4Y # _model_server_result.job_id ZjlZGyIfyug-4Wka7vJJ4Q _model_server_result.datetime_utc '2025-03-12 03:10:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":215}' # _entry.id 1E4Y # _exptl.entry_id 1E4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 916.367 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.3 _cell.angle_gamma 90 _cell.entry_id 1E4Y _cell.length_a 60.3 _cell.length_b 77.8 _cell.length_c 57.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H29 N10 O22 P5' _chem_comp.formula_weight 916.367 _chem_comp.id AP5 _chem_comp.mon_nstd_flag . _chem_comp.name "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A AP5 doub 13 n n PA O2A AP5 sing 14 n n PA O3A AP5 sing 15 n n PA O5F AP5 sing 16 n n O2A HOA2 AP5 sing 17 n n O3A PB AP5 sing 18 n n PB O1B AP5 doub 19 n n PB O2B AP5 sing 20 n n PB O3B AP5 sing 21 n n O2B HOB2 AP5 sing 22 n n O3B PG AP5 sing 23 n n PG O1G AP5 doub 24 n n PG O2G AP5 sing 25 n n PG O3G AP5 sing 26 n n O2G HOG2 AP5 sing 27 n n O3G PD AP5 sing 28 n n PD O1D AP5 doub 29 n n PD O2D AP5 sing 30 n n PD O3D AP5 sing 31 n n O2D HOD2 AP5 sing 32 n n O3D PE AP5 sing 33 n n PE O1E AP5 doub 34 n n PE O2E AP5 sing 35 n n PE O5J AP5 sing 36 n n O2E HOE2 AP5 sing 37 n n O5F C5F AP5 sing 38 n n C5F C4F AP5 sing 39 n n C5F H51A AP5 sing 40 n n C5F H52A AP5 sing 41 n n C4F O4F AP5 sing 42 n n C4F C3F AP5 sing 43 n n C4F H4F AP5 sing 44 n n O4F C1F AP5 sing 45 n n C3F O3F AP5 sing 46 n n C3F C2F AP5 sing 47 n n C3F H3F AP5 sing 48 n n O3F HO3A AP5 sing 49 n n C2F O2F AP5 sing 50 n n C2F C1F AP5 sing 51 n n C2F H2F AP5 sing 52 n n O2F HO2A AP5 sing 53 n n C1F N9A AP5 sing 54 n n C1F H1F AP5 sing 55 n n N9A C8A AP5 sing 56 n y N9A C4A AP5 sing 57 n y C8A N7A AP5 doub 58 n y C8A H8A AP5 sing 59 n n N7A C5A AP5 sing 60 n y C5A C6A AP5 sing 61 n y C5A C4A AP5 doub 62 n y C6A N6A AP5 sing 63 n n C6A N1A AP5 doub 64 n y N6A H61A AP5 sing 65 n n N6A H62A AP5 sing 66 n n N1A C2A AP5 sing 67 n y C2A N3A AP5 doub 68 n y C2A H2A AP5 sing 69 n n N3A C4A AP5 sing 70 n y O5J C5J AP5 sing 71 n n C5J C4J AP5 sing 72 n n C5J H51B AP5 sing 73 n n C5J H52B AP5 sing 74 n n C4J O4J AP5 sing 75 n n C4J C3J AP5 sing 76 n n C4J H4J AP5 sing 77 n n O4J C1J AP5 sing 78 n n C3J O3J AP5 sing 79 n n C3J C2J AP5 sing 80 n n C3J H3J AP5 sing 81 n n O3J HO3B AP5 sing 82 n n C2J O2J AP5 sing 83 n n C2J C1J AP5 sing 84 n n C2J H2J AP5 sing 85 n n O2J HO2B AP5 sing 86 n n C1J N9B AP5 sing 87 n n C1J H1J AP5 sing 88 n n N9B C8B AP5 sing 89 n y N9B C4B AP5 sing 90 n y C8B N7B AP5 doub 91 n y C8B H8B AP5 sing 92 n n N7B C5B AP5 sing 93 n y C5B C6B AP5 sing 94 n y C5B C4B AP5 doub 95 n y C6B N6B AP5 sing 96 n n C6B N1B AP5 doub 97 n y N6B H61B AP5 sing 98 n n N6B H62B AP5 sing 99 n n N1B C2B AP5 sing 100 n y C2B N3B AP5 doub 101 n y C2B H2B AP5 sing 102 n n N3B C4B AP5 sing 103 n y # _atom_sites.entry_id 1E4Y _atom_sites.fract_transf_matrix[1][1] 0.016584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001247 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AP5 A 1 215 215 AP5 AP5 . D 2 AP5 B 1 215 215 AP5 AP5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA AP5 . . . C 2 -1.527 -2.167 -0.865 1 5.15 ? PA AP5 215 A 1 HETATM 2 O O1A AP5 . . . C 2 -0.462 -3.222 -0.951 1 3.89 ? O1A AP5 215 A 1 HETATM 3 O O2A AP5 . . . C 2 -2.589 -2.346 0.14 1 4.5 ? O2A AP5 215 A 1 HETATM 4 O O3A AP5 . . . C 2 -0.895 -0.724 -0.842 1 4.39 ? O3A AP5 215 A 1 HETATM 5 P PB AP5 . . . C 2 -0.347 0.021 0.464 1 4.89 ? PB AP5 215 A 1 HETATM 6 O O1B AP5 . . . C 2 0.521 1.009 -0.225 1 4.52 ? O1B AP5 215 A 1 HETATM 7 O O2B AP5 . . . C 2 0.36 -0.933 1.333 1 3.64 ? O2B AP5 215 A 1 HETATM 8 O O3B AP5 . . . C 2 -1.651 0.662 1.108 1 4.81 ? O3B AP5 215 A 1 HETATM 9 P PG AP5 . . . C 2 -1.699 1.789 2.232 1 3.8 ? PG AP5 215 A 1 HETATM 10 O O1G AP5 . . . C 2 -0.523 1.874 3.102 1 4.89 ? O1G AP5 215 A 1 HETATM 11 O O2G AP5 . . . C 2 -1.93 3.081 1.568 1 5.18 ? O2G AP5 215 A 1 HETATM 12 O O3G AP5 . . . C 2 -3.112 1.539 2.954 1 5.31 ? O3G AP5 215 A 1 HETATM 13 P PD AP5 . . . C 2 -3.48 0.62 4.246 1 5.45 ? PD AP5 215 A 1 HETATM 14 O O1D AP5 . . . C 2 -4.982 0.8 4.273 1 4.82 ? O1D AP5 215 A 1 HETATM 15 O O2D AP5 . . . C 2 -2.948 -0.772 4.156 1 5.03 ? O2D AP5 215 A 1 HETATM 16 O O3D AP5 . . . C 2 -2.997 1.427 5.56 1 5.83 ? O3D AP5 215 A 1 HETATM 17 P PE AP5 . . . C 2 -2.763 0.876 7.024 1 6.19 ? PE AP5 215 A 1 HETATM 18 O O1E AP5 . . . C 2 -3.516 -0.348 7.3 1 6.25 ? O1E AP5 215 A 1 HETATM 19 O O2E AP5 . . . C 2 -1.316 0.872 7.379 1 6.13 ? O2E AP5 215 A 1 HETATM 20 O O5F AP5 . . . C 2 -2.275 -2.174 -2.295 1 5.35 ? O5F AP5 215 A 1 HETATM 21 C C5F AP5 . . . C 2 -3.639 -1.781 -2.442 1 7.17 ? C5F AP5 215 A 1 HETATM 22 C C4F AP5 . . . C 2 -4.415 -2.585 -3.49 1 8.28 ? C4F AP5 215 A 1 HETATM 23 O O4F AP5 . . . C 2 -3.877 -2.44 -4.812 1 9.28 ? O4F AP5 215 A 1 HETATM 24 C C3F AP5 . . . C 2 -4.448 -4.073 -3.301 1 9.18 ? C3F AP5 215 A 1 HETATM 25 O O3F AP5 . . . C 2 -5.542 -4.512 -4.064 1 8.75 ? O3F AP5 215 A 1 HETATM 26 C C2F AP5 . . . C 2 -3.15 -4.548 -3.957 1 9.92 ? C2F AP5 215 A 1 HETATM 27 O O2F AP5 . . . C 2 -3.159 -5.952 -4.365 1 9.76 ? O2F AP5 215 A 1 HETATM 28 C C1F AP5 . . . C 2 -3.002 -3.523 -5.072 1 10.67 ? C1F AP5 215 A 1 HETATM 29 N N9A AP5 . . . C 2 -1.79 -3.404 -5.931 1 12.93 ? N9A AP5 215 A 1 HETATM 30 C C8A AP5 . . . C 2 -0.469 -3.349 -5.514 1 13.67 ? C8A AP5 215 A 1 HETATM 31 N N7A AP5 . . . C 2 0.399 -3.194 -6.48 1 14.41 ? N7A AP5 215 A 1 HETATM 32 C C5A AP5 . . . C 2 -0.334 -3.102 -7.669 1 14.87 ? C5A AP5 215 A 1 HETATM 33 C C6A AP5 . . . C 2 0.001 -2.826 -9.031 1 15.48 ? C6A AP5 215 A 1 HETATM 34 N N6A AP5 . . . C 2 1.219 -2.443 -9.401 1 15.56 ? N6A AP5 215 A 1 HETATM 35 N N1A AP5 . . . C 2 -0.967 -2.892 -9.959 1 15.92 ? N1A AP5 215 A 1 HETATM 36 C C2A AP5 . . . C 2 -2.204 -3.141 -9.526 1 15.78 ? C2A AP5 215 A 1 HETATM 37 N N3A AP5 . . . C 2 -2.7 -3.383 -8.291 1 15.14 ? N3A AP5 215 A 1 HETATM 38 C C4A AP5 . . . C 2 -1.721 -3.312 -7.327 1 14.64 ? C4A AP5 215 A 1 HETATM 39 O O5J AP5 . . . C 2 -3.482 1.931 7.98 1 5.81 ? O5J AP5 215 A 1 HETATM 40 C C5J AP5 . . . C 2 -4.882 1.79 8.056 1 7.07 ? C5J AP5 215 A 1 HETATM 41 C C4J AP5 . . . C 2 -5.544 2.472 9.25 1 7.61 ? C4J AP5 215 A 1 HETATM 42 O O4J AP5 . . . C 2 -4.897 2.11 10.482 1 7.54 ? O4J AP5 215 A 1 HETATM 43 C C3J AP5 . . . C 2 -5.49 4.005 9.096 1 7.88 ? C3J AP5 215 A 1 HETATM 44 O O3J AP5 . . . C 2 -6.752 4.506 8.609 1 7.45 ? O3J AP5 215 A 1 HETATM 45 C C2J AP5 . . . C 2 -5.068 4.55 10.474 1 7.92 ? C2J AP5 215 A 1 HETATM 46 O O2J AP5 . . . C 2 -6.168 4.753 11.354 1 7.8 ? O2J AP5 215 A 1 HETATM 47 C C1J AP5 . . . C 2 -4.269 3.295 10.855 1 8.16 ? C1J AP5 215 A 1 HETATM 48 N N9B AP5 . . . C 2 -2.863 3.296 11.12 1 8.94 ? N9B AP5 215 A 1 HETATM 49 C C8B AP5 . . . C 2 -1.908 2.503 10.541 1 8.97 ? C8B AP5 215 A 1 HETATM 50 N N7B AP5 . . . C 2 -0.7 2.913 10.804 1 8.88 ? N7B AP5 215 A 1 HETATM 51 C C5B AP5 . . . C 2 -0.849 4.023 11.594 1 9.04 ? C5B AP5 215 A 1 HETATM 52 C C6B AP5 . . . C 2 0.058 4.859 12.165 1 8.95 ? C6B AP5 215 A 1 HETATM 53 N N6B AP5 . . . C 2 1.343 4.636 12.02 1 9.15 ? N6B AP5 215 A 1 HETATM 54 N N1B AP5 . . . C 2 -0.407 5.831 12.911 1 8.95 ? N1B AP5 215 A 1 HETATM 55 C C2B AP5 . . . C 2 -1.7 5.869 13.189 1 8.79 ? C2B AP5 215 A 1 HETATM 56 N N3B AP5 . . . C 2 -2.707 5.157 12.711 1 8.67 ? N3B AP5 215 A 1 HETATM 57 C C4B AP5 . . . C 2 -2.215 4.22 11.884 1 9 ? C4B AP5 215 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 57 #