data_1E51 # _model_server_result.job_id WcA_dqjakCDPdJXD6rcWvw _model_server_result.datetime_utc '2024-11-29 12:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1E51 # _exptl.entry_id 1E51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.229 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1E51 _cell.length_a 125.53 _cell.length_b 125.53 _cell.length_c 200.91 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 125.53 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 125.53 0 0 4 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 125.53 125.53 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 252 A LYS 252 1_555 C C3A PBG . A PBG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? covale ? covale2 A NZ LYS 252 A LYS 252 1_555 C C4A PBG . A PBG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? metalc ? metalc1 A SG CYS 122 A CYS 122 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc2 A SG CYS 132 A CYS 132 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc3 C N1 PBG . A PBG 500 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? # _chem_comp.formula 'C10 H14 N2 O4' _chem_comp.formula_weight 226.229 _chem_comp.id PBG _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-AMINOMETHYLPYRROL-3-ACETIC ACID 4-PROPIONIC ACID;PORPHOBILINOGEN;5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROLE-3-PROPANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A PBG sing 235 n n CHA N1 PBG sing 236 n n CHA HHA2 PBG sing 237 n n CHA HHA1 PBG sing 238 n n C1A C2A PBG doub 239 n y C1A NA PBG sing 240 n y C2A C3A PBG sing 241 n y C2A C5A PBG sing 242 n n C3A C4A PBG doub 243 n y C3A C7A PBG sing 244 n n C4A NA PBG sing 245 n y C4A H4A1 PBG sing 246 n n NA HA PBG sing 247 n n C5A C6A PBG sing 248 n n C5A H5A2 PBG sing 249 n n C5A H5A1 PBG sing 250 n n C6A O1A PBG doub 251 n n C6A O2A PBG sing 252 n n O2A H2AO PBG sing 253 n n C7A C8A PBG sing 254 n n C7A H7A2 PBG sing 255 n n C7A H7A1 PBG sing 256 n n C8A C9A PBG sing 257 n n C8A H8A2 PBG sing 258 n n C8A H8A1 PBG sing 259 n n C9A O3A PBG doub 260 n n C9A O4A PBG sing 261 n n O4A H4AO PBG sing 262 n n N1 H12 PBG sing 263 n n N1 H11 PBG sing 264 n n # _atom_sites.entry_id 1E51 _atom_sites.fract_transf_matrix[1][1] 0.007966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PBG A 1 500 500 PBG PBG . D 3 ZN A 1 501 501 ZN ZN . E 4 SO4 A 1 502 502 SO4 SO4 . F 4 SO4 B 1 503 503 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA PBG . . . C 2 33.39 74.173 60.78 1 45.04 ? CHA PBG 500 A 1 HETATM 2 C C1A PBG . . . C 2 32.963 73.57 59.415 1 45.04 ? C1A PBG 500 A 1 HETATM 3 C C2A PBG . . . C 2 32.433 74.373 58.244 1 45.04 ? C2A PBG 500 A 1 HETATM 4 C C3A PBG . . . C 2 32.242 73.37 57.13 1 45.04 ? C3A PBG 500 A 1 HETATM 5 C C4A PBG . . . C 2 32.589 71.977 57.662 1 45.04 ? C4A PBG 500 A 1 HETATM 6 N NA PBG . . . C 2 33.015 72.144 59.07 1 45.04 ? NA PBG 500 A 1 HETATM 7 C C5A PBG . . . C 2 32.005 75.877 58.234 1 45.04 ? C5A PBG 500 A 1 HETATM 8 C C6A PBG . . . C 2 33.138 76.795 58.466 1 45.04 ? C6A PBG 500 A 1 HETATM 9 O O1A PBG . . . C 2 34.379 76.231 58.657 1 45.04 ? O1A PBG 500 A 1 HETATM 10 O O2A PBG . . . C 2 33.021 78.153 58.503 1 45.04 ? O2A PBG 500 A 1 HETATM 11 C C7A PBG . . . C 2 31.733 73.721 55.696 1 45.04 ? C7A PBG 500 A 1 HETATM 12 C C8A PBG . . . C 2 30.834 72.616 55.154 1 45.04 ? C8A PBG 500 A 1 HETATM 13 C C9A PBG . . . C 2 29.754 73.154 54.235 1 45.04 ? C9A PBG 500 A 1 HETATM 14 O O3A PBG . . . C 2 29.574 74.495 53.907 1 45.04 ? O3A PBG 500 A 1 HETATM 15 O O4A PBG . . . C 2 28.821 72.328 53.627 1 45.04 ? O4A PBG 500 A 1 HETATM 16 N N1 PBG . . . C 2 33.841 73.096 61.642 1 45.04 ? N1 PBG 500 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 16 #