data_1E6V
#
_model_server_result.job_id            qTJcjK0xg3ZjK4x6aV3zDQ 
_model_server_result.datetime_utc      '2024-11-13 11:17:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1e6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1554}' 
#
_entry.id    1E6V 
#
_exptl.entry_id    1E6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              343.334 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Coenzyme B' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1E6V 
_cell.length_a            80.519 
_cell.length_b            115.74 
_cell.length_c            268.51 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1E6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 150 A GLN 150 1_555 G NI F43 . A F43 1553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc2 G NI F43 . A F43 1553 1_555 I S1 COM . A COM 1555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc3 D OE1 GLN 150 D GLN 150 1_555 J NI F43 . D F43 1553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc4 J NI F43 . D F43 1553 1_555 L S1 COM . D COM 1555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
#
_chem_comp.formula           'C11 H22 N O7 P S' 
_chem_comp.formula_weight    343.334 
_chem_comp.id                TP7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Coenzyme B' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     7-MERCAPTOHEPTANOYLTHREONINEPHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA TP7 sing 438 n n 
N C1 TP7 sing 439 n n 
P O1P TP7 doub 440 n n 
P O2P TP7 sing 441 n n 
P O3P TP7 sing 442 n n 
P O4P TP7 sing 443 n n 
O4P CB TP7 sing 444 n n 
CB CA TP7 sing 445 n n 
CB CG TP7 sing 446 n n 
C O TP7 sing 447 n n 
C OXT TP7 doub 448 n n 
C CA TP7 sing 449 n n 
O1 C1 TP7 doub 450 n n 
C1 C2 TP7 sing 451 n n 
C2 C3 TP7 sing 452 n n 
C3 C4 TP7 sing 453 n n 
C4 C5 TP7 sing 454 n n 
C5 C6 TP7 sing 455 n n 
C6 C7 TP7 sing 456 n n 
C7 S7 TP7 sing 457 n n 
N H TP7 sing 458 n n 
CA HA TP7 sing 459 n n 
O2P H2P TP7 sing 460 n n 
O3P H3P TP7 sing 461 n n 
CB HB TP7 sing 462 n n 
CG HG1C TP7 sing 463 n n 
CG HG2C TP7 sing 464 n n 
CG HG3C TP7 sing 465 n n 
O HC TP7 sing 466 n n 
C2 H21C TP7 sing 467 n n 
C2 H22C TP7 sing 468 n n 
C3 H31C TP7 sing 469 n n 
C3 H32C TP7 sing 470 n n 
C4 H41C TP7 sing 471 n n 
C4 H42C TP7 sing 472 n n 
C5 H51C TP7 sing 473 n n 
C5 H52C TP7 sing 474 n n 
C6 H61C TP7 sing 475 n n 
C6 H62C TP7 sing 476 n n 
C7 H71C TP7 sing 477 n n 
C7 H72C TP7 sing 478 n n 
S7 H7 TP7 sing 479 n n 
#
_atom_sites.entry_id                     1E6V 
_atom_sites.fract_transf_matrix[1][1]    0.012419 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00864 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 F43 A 1 1553 1553 F43 F43 . 
H 5 TP7 A 1 1554 1554 TP7 TP7 . 
I 6 COM A 1 1555 1555 COM COM . 
J 4 F43 D 1 1553 1553 F43 F43 . 
K 5 TP7 D 1 1554 1554 TP7 TP7 . 
L 6 COM D 1 1555 1555 COM COM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N TP7 . . . H 5 63.421 -2.227 103.797 1 23.92 ? N TP7 1554 A 1 
HETATM 2 P P TP7 . . . H 5 66.973 -3.82 101.562 1 24.04 ? P TP7 1554 A 1 
HETATM 3 O O1P TP7 . . . H 5 67.586 -2.839 100.623 1 23.96 ? O1P TP7 1554 A 1 
HETATM 4 O O2P TP7 . . . H 5 66.423 -5.005 100.845 1 23.95 ? O2P TP7 1554 A 1 
HETATM 5 O O3P TP7 . . . H 5 67.988 -4.237 102.616 1 24.38 ? O3P TP7 1554 A 1 
HETATM 6 O O4P TP7 . . . H 5 65.705 -3.067 102.297 1 24.02 ? O4P TP7 1554 A 1 
HETATM 7 C CB TP7 . . . H 5 64.482 -2.834 101.695 1 23.99 ? CB TP7 1554 A 1 
HETATM 8 C C TP7 . . . H 5 63.455 -4.569 103.135 1 24.23 ? C TP7 1554 A 1 
HETATM 9 O O TP7 . . . H 5 64.012 -4.819 104.232 1 24.46 ? O TP7 1554 A 1 
HETATM 10 O OXT TP7 . . . H 5 62.939 -5.481 102.399 1 24.36 ? OXT TP7 1554 A 1 
HETATM 11 C CA TP7 . . . H 5 63.382 -3.077 102.682 1 24.1 ? CA TP7 1554 A 1 
HETATM 12 C CG TP7 . . . H 5 64.452 -1.417 101.195 1 23.7 ? CG TP7 1554 A 1 
HETATM 13 O O1 TP7 . . . H 5 61.625 -0.998 103.156 1 23.64 ? O1 TP7 1554 A 1 
HETATM 14 C C1 TP7 . . . H 5 62.393 -1.309 104.089 1 23.77 ? C1 TP7 1554 A 1 
HETATM 15 C C2 TP7 . . . H 5 62.247 -0.839 105.409 1 23.66 ? C2 TP7 1554 A 1 
HETATM 16 C C3 TP7 . . . H 5 61.086 0.13 105.722 1 23.6 ? C3 TP7 1554 A 1 
HETATM 17 C C4 TP7 . . . H 5 60.722 0.535 107.149 1 23.78 ? C4 TP7 1554 A 1 
HETATM 18 C C5 TP7 . . . H 5 61.854 1.386 107.759 1 24 ? C5 TP7 1554 A 1 
HETATM 19 C C6 TP7 . . . H 5 61.994 2.76 107.041 1 24.2 ? C6 TP7 1554 A 1 
HETATM 20 C C7 TP7 . . . H 5 60.737 3.533 107.244 1 24.45 ? C7 TP7 1554 A 1 
HETATM 21 S S7 TP7 . . . H 5 60.643 5.162 106.507 1 24.77 ? S7 TP7 1554 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#