data_1E6V # _model_server_result.job_id kZHviuVstehPbbesPBar7Q _model_server_result.datetime_utc '2024-11-13 10:53:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1554}' # _entry.id 1E6V # _exptl.entry_id 1E6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.334 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Coenzyme B' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1E6V _cell.length_a 80.519 _cell.length_b 115.74 _cell.length_c 268.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 150 A GLN 150 1_555 G NI F43 . A F43 1553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 G NI F43 . A F43 1553 1_555 I S1 COM . A COM 1555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc3 D OE1 GLN 150 D GLN 150 1_555 J NI F43 . D F43 1553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 J NI F43 . D F43 1553 1_555 L S1 COM . D COM 1555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C11 H22 N O7 P S' _chem_comp.formula_weight 343.334 _chem_comp.id TP7 _chem_comp.mon_nstd_flag . _chem_comp.name 'Coenzyme B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-MERCAPTOHEPTANOYLTHREONINEPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TP7 sing 438 n n N C1 TP7 sing 439 n n P O1P TP7 doub 440 n n P O2P TP7 sing 441 n n P O3P TP7 sing 442 n n P O4P TP7 sing 443 n n O4P CB TP7 sing 444 n n CB CA TP7 sing 445 n n CB CG TP7 sing 446 n n C O TP7 sing 447 n n C OXT TP7 doub 448 n n C CA TP7 sing 449 n n O1 C1 TP7 doub 450 n n C1 C2 TP7 sing 451 n n C2 C3 TP7 sing 452 n n C3 C4 TP7 sing 453 n n C4 C5 TP7 sing 454 n n C5 C6 TP7 sing 455 n n C6 C7 TP7 sing 456 n n C7 S7 TP7 sing 457 n n N H TP7 sing 458 n n CA HA TP7 sing 459 n n O2P H2P TP7 sing 460 n n O3P H3P TP7 sing 461 n n CB HB TP7 sing 462 n n CG HG1C TP7 sing 463 n n CG HG2C TP7 sing 464 n n CG HG3C TP7 sing 465 n n O HC TP7 sing 466 n n C2 H21C TP7 sing 467 n n C2 H22C TP7 sing 468 n n C3 H31C TP7 sing 469 n n C3 H32C TP7 sing 470 n n C4 H41C TP7 sing 471 n n C4 H42C TP7 sing 472 n n C5 H51C TP7 sing 473 n n C5 H52C TP7 sing 474 n n C6 H61C TP7 sing 475 n n C6 H62C TP7 sing 476 n n C7 H71C TP7 sing 477 n n C7 H72C TP7 sing 478 n n S7 H7 TP7 sing 479 n n # _atom_sites.entry_id 1E6V _atom_sites.fract_transf_matrix[1][1] 0.012419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 F43 A 1 1553 1553 F43 F43 . H 5 TP7 A 1 1554 1554 TP7 TP7 . I 6 COM A 1 1555 1555 COM COM . J 4 F43 D 1 1553 1553 F43 F43 . K 5 TP7 D 1 1554 1554 TP7 TP7 . L 6 COM D 1 1555 1555 COM COM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TP7 . . . K 5 49.663 -27.924 101.842 1 23.92 ? N TP7 1554 D 1 HETATM 2 P P TP7 . . . K 5 47.211 -26.486 98.368 1 24.04 ? P TP7 1554 D 1 HETATM 3 O O1P TP7 . . . K 5 46.98 -27.521 97.321 1 23.96 ? O1P TP7 1554 D 1 HETATM 4 O O2P TP7 . . . K 5 48 -25.335 97.845 1 23.95 ? O2P TP7 1554 D 1 HETATM 5 O O3P TP7 . . . K 5 45.881 -26.024 98.946 1 24.38 ? O3P TP7 1554 D 1 HETATM 6 O O4P TP7 . . . K 5 48.108 -27.187 99.559 1 24.02 ? O4P TP7 1554 D 1 HETATM 7 C CB TP7 . . . K 5 49.464 -27.439 99.468 1 23.99 ? CB TP7 1554 D 1 HETATM 8 C C TP7 . . . K 5 49.901 -25.62 101.093 1 24.23 ? C TP7 1554 D 1 HETATM 9 O O TP7 . . . K 5 48.979 -25.319 101.89 1 24.46 ? O TP7 1554 D 1 HETATM 10 O OXT TP7 . . . K 5 50.663 -24.743 100.554 1 24.36 ? OXT TP7 1554 D 1 HETATM 11 C CA TP7 . . . K 5 50.122 -27.133 100.778 1 24.1 ? CA TP7 1554 D 1 HETATM 12 C CG TP7 . . . K 5 49.663 -28.88 99.089 1 23.7 ? CG TP7 1554 D 1 HETATM 13 O O1 TP7 . . . K 5 51.556 -29.167 101.979 1 23.64 ? O1 TP7 1554 D 1 HETATM 14 C C1 TP7 . . . K 5 50.499 -28.815 102.542 1 23.77 ? C1 TP7 1554 D 1 HETATM 15 C C2 TP7 . . . K 5 50.14 -29.214 103.845 1 23.66 ? C2 TP7 1554 D 1 HETATM 16 C C3 TP7 . . . K 5 51.092 -30.154 104.617 1 23.6 ? C3 TP7 1554 D 1 HETATM 17 C C4 TP7 . . . K 5 50.896 -30.479 106.096 1 23.78 ? C4 TP7 1554 D 1 HETATM 18 C C5 TP7 . . . K 5 49.609 -31.308 106.286 1 24 ? C5 TP7 1554 D 1 HETATM 19 C C6 TP7 . . . K 5 49.732 -32.72 105.64 1 24.2 ? C6 TP7 1554 D 1 HETATM 20 C C7 TP7 . . . K 5 50.816 -33.468 106.336 1 24.45 ? C7 TP7 1554 D 1 HETATM 21 S S7 TP7 . . . K 5 51.16 -35.133 105.773 1 24.77 ? S7 TP7 1554 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 21 #