data_1E88 # _model_server_result.job_id 3_wUdYOurBrAIyuPG3YNzw _model_server_result.datetime_utc '2024-11-16 09:40:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":161}' # _entry.id 1E88 # _exptl.entry_id 1E88 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1E88 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 29 A CYS 29 1_555 A SG CYS 38 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 56 A CYS 56 1_555 A SG CYS 82 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 70 A CYS 70 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 116 A CYS 116 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 130 A CYS 130 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 126 A ASN 126 1_555 B C1 NAG . A NAG 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 214 n n C1 O1 NAG sing 215 n n C1 O5 NAG sing 216 n n C1 H1 NAG sing 217 n n C2 C3 NAG sing 218 n n C2 N2 NAG sing 219 n n C2 H2 NAG sing 220 n n C3 C4 NAG sing 221 n n C3 O3 NAG sing 222 n n C3 H3 NAG sing 223 n n C4 C5 NAG sing 224 n n C4 O4 NAG sing 225 n n C4 H4 NAG sing 226 n n C5 C6 NAG sing 227 n n C5 O5 NAG sing 228 n n C5 H5 NAG sing 229 n n C6 O6 NAG sing 230 n n C6 H61 NAG sing 231 n n C6 H62 NAG sing 232 n n C7 C8 NAG sing 233 n n C7 N2 NAG sing 234 n n C7 O7 NAG doub 235 n n C8 H81 NAG sing 236 n n C8 H82 NAG sing 237 n n C8 H83 NAG sing 238 n n N2 HN2 NAG sing 239 n n O1 HO1 NAG sing 240 n n O3 HO3 NAG sing 241 n n O4 HO4 NAG sing 242 n n O6 HO6 NAG sing 243 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1E88 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 161 _pdbx_nonpoly_scheme.auth_seq_num 161 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 17.399 -0.678 -3.171 1 0 ? C1 NAG 161 A 1 HETATM 2 C C2 NAG . . . B 2 18.813 -0.196 -2.9 1 0 ? C2 NAG 161 A 1 HETATM 3 C C3 NAG . . . B 2 18.749 1.106 -2.109 1 0 ? C3 NAG 161 A 1 HETATM 4 C C4 NAG . . . B 2 17.978 2.181 -2.91 1 0 ? C4 NAG 161 A 1 HETATM 5 C C5 NAG . . . B 2 16.535 1.616 -3.178 1 0 ? C5 NAG 161 A 1 HETATM 6 C C6 NAG . . . B 2 15.685 2.577 -4.026 1 0 ? C6 NAG 161 A 1 HETATM 7 C C7 NAG . . . B 2 20.684 -1.739 -2.668 1 0 ? C7 NAG 161 A 1 HETATM 8 C C8 NAG . . . B 2 21.384 -2.764 -1.781 1 0 ? C8 NAG 161 A 1 HETATM 9 N N2 NAG . . . B 2 19.583 -1.189 -2.165 1 0 ? N2 NAG 161 A 1 HETATM 10 O O3 NAG . . . B 2 20.065 1.567 -1.849 1 0 ? O3 NAG 161 A 1 HETATM 11 O O4 NAG . . . B 2 17.958 3.368 -2.126 1 0 ? O4 NAG 161 A 1 HETATM 12 O O5 NAG . . . B 2 16.662 0.343 -3.873 1 0 ? O5 NAG 161 A 1 HETATM 13 O O6 NAG . . . B 2 14.838 1.808 -4.878 1 0 ? O6 NAG 161 A 1 HETATM 14 O O7 NAG . . . B 2 21.124 -1.449 -3.781 1 0 ? O7 NAG 161 A 1 HETATM 15 H H1 NAG . . . B 2 16.9 -0.899 -2.217 1 0 ? H1 NAG 161 A 1 HETATM 16 H H2 NAG . . . B 2 19.306 0.004 -3.864 1 0 ? H2 NAG 161 A 1 HETATM 17 H H3 NAG . . . B 2 18.227 0.923 -1.157 1 0 ? H3 NAG 161 A 1 HETATM 18 H H4 NAG . . . B 2 18.489 2.361 -3.871 1 0 ? H4 NAG 161 A 1 HETATM 19 H H5 NAG . . . B 2 16.032 1.453 -2.213 1 0 ? H5 NAG 161 A 1 HETATM 20 H H61 NAG . . . B 2 15.071 3.206 -3.366 1 0 ? H61 NAG 161 A 1 HETATM 21 H H62 NAG . . . B 2 16.343 3.212 -4.635 1 0 ? H62 NAG 161 A 1 HETATM 22 H H81 NAG . . . B 2 22.399 -2.902 -2.122 1 0 ? H81 NAG 161 A 1 HETATM 23 H H82 NAG . . . B 2 20.856 -3.705 -1.833 1 0 ? H82 NAG 161 A 1 HETATM 24 H H83 NAG . . . B 2 21.391 -2.412 -0.76 1 0 ? H83 NAG 161 A 1 HETATM 25 H HN2 NAG . . . B 2 19.287 -1.464 -1.272 1 0 ? HN2 NAG 161 A 1 HETATM 26 H HO3 NAG . . . B 2 20.027 2.451 -1.475 1 0 ? HO3 NAG 161 A 1 HETATM 27 H HO4 NAG . . . B 2 17.305 3.976 -2.481 1 0 ? HO4 NAG 161 A 1 HETATM 28 H HO6 NAG . . . B 2 15.014 2.034 -5.794 1 0 ? HO6 NAG 161 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 324 _model_server_stats.query_time_ms 5544 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #