data_1E96 # _model_server_result.job_id XYcDFqhO4WPcjasXCk_2Qg _model_server_result.datetime_utc '2024-12-22 01:02:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 1E96 # _exptl.entry_id 1E96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1E96 _cell.length_a 83.22 _cell.length_b 83.22 _cell.length_c 138.53 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 C O3G GTP . A GTP 200 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 C O2B GTP . A GTP 200 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 D MG MG . A MG 201 1_555 E O HOH . A HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 D MG MG . A MG 201 1_555 E O HOH . A HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1E96 _atom_sites.fract_transf_matrix[1][1] 0.012016 _atom_sites.fract_transf_matrix[1][2] 0.006938 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP A 1 200 200 GTP GTP . D 4 MG A 1 201 201 MG MG . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH B 1 2001 2001 HOH HOH . F 5 HOH B 2 2002 2002 HOH HOH . F 5 HOH B 3 2003 2003 HOH HOH . F 5 HOH B 4 2004 2004 HOH HOH . F 5 HOH B 5 2005 2005 HOH HOH . F 5 HOH B 6 2006 2006 HOH HOH . F 5 HOH B 7 2007 2007 HOH HOH . F 5 HOH B 8 2008 2008 HOH HOH . F 5 HOH B 9 2009 2009 HOH HOH . F 5 HOH B 10 2010 2010 HOH HOH . F 5 HOH B 11 2011 2011 HOH HOH . F 5 HOH B 12 2012 2012 HOH HOH . F 5 HOH B 13 2013 2013 HOH HOH . F 5 HOH B 14 2014 2014 HOH HOH . F 5 HOH B 15 2015 2015 HOH HOH . F 5 HOH B 16 2016 2016 HOH HOH . F 5 HOH B 17 2017 2017 HOH HOH . F 5 HOH B 18 2018 2018 HOH HOH . F 5 HOH B 19 2019 2019 HOH HOH . F 5 HOH B 20 2020 2020 HOH HOH . F 5 HOH B 21 2021 2021 HOH HOH . F 5 HOH B 22 2022 2022 HOH HOH . F 5 HOH B 23 2023 2023 HOH HOH . F 5 HOH B 24 2024 2024 HOH HOH . F 5 HOH B 25 2025 2025 HOH HOH . F 5 HOH B 26 2026 2026 HOH HOH . F 5 HOH B 27 2027 2027 HOH HOH . F 5 HOH B 28 2028 2028 HOH HOH . F 5 HOH B 29 2029 2029 HOH HOH . F 5 HOH B 30 2030 2030 HOH HOH . F 5 HOH B 31 2031 2031 HOH HOH . F 5 HOH B 32 2032 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 6.787 32.353 55.984 1 18.63 ? PG GTP 200 A 1 HETATM 2 O O1G GTP . . . C 3 7.75 31.452 55.316 1 17.71 ? O1G GTP 200 A 1 HETATM 3 O O2G GTP . . . C 3 7.341 33.784 56.077 1 17.95 ? O2G GTP 200 A 1 HETATM 4 O O3G GTP . . . C 3 6.484 31.801 57.358 1 16.94 ? O3G GTP 200 A 1 HETATM 5 O O3B GTP . . . C 3 5.37 32.481 55.169 1 17.46 ? O3B GTP 200 A 1 HETATM 6 P PB GTP . . . C 3 4.262 31.321 54.958 1 12.67 ? PB GTP 200 A 1 HETATM 7 O O1B GTP . . . C 3 4.615 30.624 53.725 1 14.02 ? O1B GTP 200 A 1 HETATM 8 O O2B GTP . . . C 3 4.02 30.289 56.047 1 16.43 ? O2B GTP 200 A 1 HETATM 9 O O3A GTP . . . C 3 2.908 32.149 54.838 1 16.53 ? O3A GTP 200 A 1 HETATM 10 P PA GTP . . . C 3 1.622 31.863 55.768 1 14.78 ? PA GTP 200 A 1 HETATM 11 O O1A GTP . . . C 3 1.244 30.435 55.799 1 15.27 ? O1A GTP 200 A 1 HETATM 12 O O2A GTP . . . C 3 1.882 32.424 57.159 1 16.96 ? O2A GTP 200 A 1 HETATM 13 O O5' GTP . . . C 3 0.525 32.721 54.991 1 16.61 ? O5' GTP 200 A 1 HETATM 14 C C5' GTP . . . C 3 0.814 34.054 54.647 1 17.57 ? C5' GTP 200 A 1 HETATM 15 C C4' GTP . . . C 3 -0.498 34.799 54.517 1 18.9 ? C4' GTP 200 A 1 HETATM 16 O O4' GTP . . . C 3 -1.231 34.297 53.41 1 19.85 ? O4' GTP 200 A 1 HETATM 17 C C3' GTP . . . C 3 -1.323 34.535 55.747 1 20.38 ? C3' GTP 200 A 1 HETATM 18 O O3' GTP . . . C 3 -1.647 35.764 56.301 1 20.66 ? O3' GTP 200 A 1 HETATM 19 C C2' GTP . . . C 3 -2.586 33.883 55.246 1 21.8 ? C2' GTP 200 A 1 HETATM 20 O O2' GTP . . . C 3 -3.696 34.597 55.726 1 27.11 ? O2' GTP 200 A 1 HETATM 21 C C1' GTP . . . C 3 -2.57 34.028 53.742 1 18.32 ? C1' GTP 200 A 1 HETATM 22 N N9 GTP . . . C 3 -2.993 32.746 53.165 1 15.24 ? N9 GTP 200 A 1 HETATM 23 C C8 GTP . . . C 3 -2.375 31.542 53.365 1 12.93 ? C8 GTP 200 A 1 HETATM 24 N N7 GTP . . . C 3 -3.072 30.614 52.686 1 12.58 ? N7 GTP 200 A 1 HETATM 25 C C5 GTP . . . C 3 -4.127 31.188 52.082 1 11.51 ? C5 GTP 200 A 1 HETATM 26 C C6 GTP . . . C 3 -5.139 30.676 51.271 1 10.43 ? C6 GTP 200 A 1 HETATM 27 O O6 GTP . . . C 3 -5.189 29.483 50.969 1 10.67 ? O6 GTP 200 A 1 HETATM 28 N N1 GTP . . . C 3 -6.076 31.534 50.782 1 7.81 ? N1 GTP 200 A 1 HETATM 29 C C2 GTP . . . C 3 -6.033 32.874 51.112 1 7.37 ? C2 GTP 200 A 1 HETATM 30 N N2 GTP . . . C 3 -6.97 33.691 50.647 1 6.85 ? N2 GTP 200 A 1 HETATM 31 N N3 GTP . . . C 3 -5.036 33.374 51.901 1 7.96 ? N3 GTP 200 A 1 HETATM 32 C C4 GTP . . . C 3 -4.087 32.539 52.371 1 11.99 ? C4 GTP 200 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #