data_1E9Z # _model_server_result.job_id RpMQ_oLS3M0_Mhqti-yOdQ _model_server_result.datetime_utc '2024-11-28 03:53:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1e9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3002}' # _entry.id 1E9Z # _exptl.entry_id 1E9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1E9Z _cell.length_a 177.91 _cell.length_b 177.91 _cell.length_c 177.91 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 177.91 177.91 0 3 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 177.91 177.91 0 4 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0 -1 0 0 0 1 -1 0 0 177.91 0 177.91 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 177.91 177.91 0 7 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 177.91 177.91 8 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 177.91 177.91 9 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 177.91 0 177.91 10 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 177.91 0 177.91 11 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 12 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 177.91 177.91 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PHE 218 B PHE 218 1_555 B N KCX 219 B KCX 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 B C KCX 219 B KCX 219 1_555 B N ILE 220 B ILE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 B NE2 HIS 136 B HIS 136 1_555 D NI NI . B NI 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc2 B NE2 HIS 138 B HIS 138 1_555 D NI NI . B NI 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 B OQ2 KCX 219 B KCX 219 1_555 C NI NI . B NI 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc4 B OQ2 KCX 219 B KCX 219 1_555 D NI NI . B NI 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc5 B ND1 HIS 248 B HIS 248 1_555 C NI NI . B NI 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc6 B NE2 HIS 274 B HIS 274 1_555 C NI NI . B NI 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc7 B OD1 ASP 362 B ASP 362 1_555 D NI NI . B NI 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 F O HOH . B HOH 2027 1_555 C NI NI . B NI 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc9 C NI NI . B NI 3001 1_555 D NI NI . B NI 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1E9Z _atom_sites.fract_transf_matrix[1][1] 0.005621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI B 1 3001 3001 NI NI . D 3 NI B 1 3002 3002 NI NI . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH B 1 2001 2001 HOH HOH . F 4 HOH B 2 2002 2002 HOH HOH . F 4 HOH B 3 2003 2003 HOH HOH . F 4 HOH B 4 2004 2004 HOH HOH . F 4 HOH B 5 2005 2005 HOH HOH . F 4 HOH B 6 2006 2006 HOH HOH . F 4 HOH B 7 2007 2007 HOH HOH . F 4 HOH B 8 2008 2008 HOH HOH . F 4 HOH B 9 2009 2009 HOH HOH . F 4 HOH B 10 2010 2010 HOH HOH . F 4 HOH B 11 2011 2011 HOH HOH . F 4 HOH B 12 2012 2012 HOH HOH . F 4 HOH B 13 2013 2013 HOH HOH . F 4 HOH B 14 2014 2014 HOH HOH . F 4 HOH B 15 2015 2015 HOH HOH . F 4 HOH B 16 2016 2016 HOH HOH . F 4 HOH B 17 2017 2017 HOH HOH . F 4 HOH B 18 2018 2018 HOH HOH . F 4 HOH B 19 2019 2019 HOH HOH . F 4 HOH B 20 2020 2020 HOH HOH . F 4 HOH B 21 2021 2021 HOH HOH . F 4 HOH B 22 2022 2022 HOH HOH . F 4 HOH B 23 2023 2023 HOH HOH . F 4 HOH B 24 2024 2024 HOH HOH . F 4 HOH B 25 2025 2025 HOH HOH . F 4 HOH B 26 2026 2026 HOH HOH . F 4 HOH B 27 2027 2027 HOH HOH . F 4 HOH B 28 2028 2028 HOH HOH . F 4 HOH B 29 2029 2029 HOH HOH . F 4 HOH B 30 2030 2030 HOH HOH . F 4 HOH B 31 2031 2031 HOH HOH . F 4 HOH B 32 2032 2032 HOH HOH . F 4 HOH B 33 2033 2033 HOH HOH . F 4 HOH B 34 2034 2034 HOH HOH . F 4 HOH B 35 2035 2035 HOH HOH . F 4 HOH B 36 2036 2036 HOH HOH . F 4 HOH B 37 2037 2037 HOH HOH . F 4 HOH B 38 2038 2038 HOH HOH . F 4 HOH B 39 2039 2039 HOH HOH . F 4 HOH B 40 2040 2040 HOH HOH . F 4 HOH B 41 2041 2041 HOH HOH . F 4 HOH B 42 2042 2042 HOH HOH . F 4 HOH B 43 2043 2043 HOH HOH . F 4 HOH B 44 2044 2044 HOH HOH . F 4 HOH B 45 2045 2045 HOH HOH . F 4 HOH B 46 2046 2046 HOH HOH . F 4 HOH B 47 2047 2047 HOH HOH . F 4 HOH B 48 2048 2048 HOH HOH . F 4 HOH B 49 2049 2049 HOH HOH . F 4 HOH B 50 2050 2050 HOH HOH . F 4 HOH B 51 2051 2051 HOH HOH . F 4 HOH B 52 2052 2052 HOH HOH . F 4 HOH B 53 2053 2053 HOH HOH . F 4 HOH B 54 2054 2054 HOH HOH . F 4 HOH B 55 2055 2055 HOH HOH . F 4 HOH B 56 2056 2056 HOH HOH . F 4 HOH B 57 2057 2057 HOH HOH . F 4 HOH B 58 2058 2058 HOH HOH . F 4 HOH B 59 2059 2059 HOH HOH . F 4 HOH B 60 2060 2060 HOH HOH . F 4 HOH B 61 2061 2061 HOH HOH . F 4 HOH B 62 2062 2062 HOH HOH . F 4 HOH B 63 2063 2063 HOH HOH . F 4 HOH B 64 2064 2064 HOH HOH . F 4 HOH B 65 2065 2065 HOH HOH . F 4 HOH B 66 2066 2066 HOH HOH . F 4 HOH B 67 2067 2067 HOH HOH . F 4 HOH B 68 2068 2068 HOH HOH . F 4 HOH B 69 2069 2069 HOH HOH . F 4 HOH B 70 2070 2070 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 127.227 _atom_site.Cartn_y 125.695 _atom_site.Cartn_z 86.661 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 3002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #