data_1EA6
#
_model_server_result.job_id            NUKDMCP9oSa84OwGsuLVyg 
_model_server_result.datetime_utc      '2024-10-24 04:23:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ea6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1366}' 
#
_entry.id    1EA6 
#
_exptl.entry_id    1EA6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EA6 
_cell.length_a            75.043 
_cell.length_b            74.983 
_cell.length_c            135.294 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EA6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 27 1_555 B SG CYS 259 B CYS 259 2_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
disulf ? disulf2 A SG CYS 259 A CYS 259 1_555 B SG CYS 27 B CYS 27 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc1 A OD1 ASN 45 A ASN 45 1_555 C MG MG . A MG 1365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc2 C MG MG . A MG 1365 1_555 D O1B ADP . A ADP 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc3 C MG MG . A MG 1365 1_555 D O3B ADP . A ADP 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc4 B OD1 ASN 45 B ASN 45 1_555 E MG MG . B MG 1365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc5 E MG MG . B MG 1365 1_555 F O1A ADP . B ADP 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc6 E MG MG . B MG 1365 1_555 F O3B ADP . B ADP 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1EA6 
_atom_sites.fract_transf_matrix[1][1]    0.013326 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013336 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 1365 1365 MG MG . 
D 3 ADP A 1 1366 1366 ADP ADP . 
E 2 MG B 1 1365 1365 MG MG . 
F 3 ADP B 1 1366 1366 ADP ADP . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
G 4 HOH A 7 2007 2007 HOH HOH . 
G 4 HOH A 8 2008 2008 HOH HOH . 
G 4 HOH A 9 2009 2009 HOH HOH . 
G 4 HOH A 10 2010 2010 HOH HOH . 
G 4 HOH A 11 2011 2011 HOH HOH . 
G 4 HOH A 12 2012 2012 HOH HOH . 
G 4 HOH A 13 2013 2013 HOH HOH . 
G 4 HOH A 14 2014 2014 HOH HOH . 
G 4 HOH A 15 2015 2015 HOH HOH . 
G 4 HOH A 16 2016 2016 HOH HOH . 
G 4 HOH A 17 2017 2017 HOH HOH . 
G 4 HOH A 18 2018 2018 HOH HOH . 
G 4 HOH A 19 2019 2019 HOH HOH . 
G 4 HOH A 20 2020 2020 HOH HOH . 
G 4 HOH A 21 2021 2021 HOH HOH . 
G 4 HOH A 22 2022 2022 HOH HOH . 
G 4 HOH A 23 2023 2023 HOH HOH . 
G 4 HOH A 24 2024 2024 HOH HOH . 
G 4 HOH A 25 2025 2025 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
H 4 HOH B 6 2006 2006 HOH HOH . 
H 4 HOH B 7 2007 2007 HOH HOH . 
H 4 HOH B 8 2008 2008 HOH HOH . 
H 4 HOH B 9 2009 2009 HOH HOH . 
H 4 HOH B 10 2010 2010 HOH HOH . 
H 4 HOH B 11 2011 2011 HOH HOH . 
H 4 HOH B 12 2012 2012 HOH HOH . 
H 4 HOH B 13 2013 2013 HOH HOH . 
H 4 HOH B 14 2014 2014 HOH HOH . 
H 4 HOH B 15 2015 2015 HOH HOH . 
H 4 HOH B 16 2016 2016 HOH HOH . 
H 4 HOH B 17 2017 2017 HOH HOH . 
H 4 HOH B 18 2018 2018 HOH HOH . 
H 4 HOH B 19 2019 2019 HOH HOH . 
H 4 HOH B 20 2020 2020 HOH HOH . 
H 4 HOH B 21 2021 2021 HOH HOH . 
H 4 HOH B 22 2022 2022 HOH HOH . 
H 4 HOH B 23 2023 2023 HOH HOH . 
H 4 HOH B 24 2024 2024 HOH HOH . 
H 4 HOH B 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . F 3 40.847 47.49 -3.607 1 94.37 ? PB ADP 1366 B 1 
HETATM 2 O O1B ADP . . . F 3 39.857 47.656 -2.446 1 93.92 ? O1B ADP 1366 B 1 
HETATM 3 O O2B ADP . . . F 3 40.347 46.674 -4.747 1 93.59 ? O2B ADP 1366 B 1 
HETATM 4 O O3B ADP . . . F 3 41.393 48.878 -4.082 1 93.47 ? O3B ADP 1366 B 1 
HETATM 5 P PA ADP . . . F 3 43.268 46.912 -1.918 1 93.62 ? PA ADP 1366 B 1 
HETATM 6 O O1A ADP . . . F 3 43.804 48.314 -1.876 1 93.66 ? O1A ADP 1366 B 1 
HETATM 7 O O2A ADP . . . F 3 44.262 45.834 -2.089 1 93.35 ? O2A ADP 1366 B 1 
HETATM 8 O O3A ADP . . . F 3 42.162 46.762 -3.129 1 94.15 ? O3A ADP 1366 B 1 
HETATM 9 O O5' ADP . . . F 3 42.339 46.6 -0.645 1 91.94 ? O5' ADP 1366 B 1 
HETATM 10 C C5' ADP . . . F 3 41.832 45.247 -0.731 1 88.25 ? C5' ADP 1366 B 1 
HETATM 11 C C4' ADP . . . F 3 40.983 44.673 0.347 1 85.95 ? C4' ADP 1366 B 1 
HETATM 12 O O4' ADP . . . F 3 41.572 44.851 1.684 1 84.01 ? O4' ADP 1366 B 1 
HETATM 13 C C3' ADP . . . F 3 39.55 45.163 0.424 1 85.57 ? C3' ADP 1366 B 1 
HETATM 14 O O3' ADP . . . F 3 38.72 44.165 -0.221 1 85.65 ? O3' ADP 1366 B 1 
HETATM 15 C C2' ADP . . . F 3 39.203 45.272 1.973 1 85.74 ? C2' ADP 1366 B 1 
HETATM 16 O O2' ADP . . . F 3 38.261 44.242 2.425 1 87.7 ? O2' ADP 1366 B 1 
HETATM 17 C C1' ADP . . . F 3 40.59 45.131 2.684 1 83.31 ? C1' ADP 1366 B 1 
HETATM 18 N N9 ADP . . . F 3 41.013 46.38 3.462 1 80.27 ? N9 ADP 1366 B 1 
HETATM 19 C C8 ADP . . . F 3 42.049 47.171 3.204 1 78.94 ? C8 ADP 1366 B 1 
HETATM 20 N N7 ADP . . . F 3 42.147 48.147 4.026 1 78 ? N7 ADP 1366 B 1 
HETATM 21 C C5 ADP . . . F 3 41.078 47.983 4.91 1 77.66 ? C5 ADP 1366 B 1 
HETATM 22 C C6 ADP . . . F 3 40.592 48.713 6.069 1 76.16 ? C6 ADP 1366 B 1 
HETATM 23 N N6 ADP . . . F 3 41.21 49.844 6.546 1 73.33 ? N6 ADP 1366 B 1 
HETATM 24 N N1 ADP . . . F 3 39.478 48.234 6.705 1 77.19 ? N1 ADP 1366 B 1 
HETATM 25 C C2 ADP . . . F 3 38.865 47.132 6.249 1 77.84 ? C2 ADP 1366 B 1 
HETATM 26 N N3 ADP . . . F 3 39.239 46.395 5.182 1 78.05 ? N3 ADP 1366 B 1 
HETATM 27 C C4 ADP . . . F 3 40.356 46.879 4.553 1 79.17 ? C4 ADP 1366 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#