data_1EAB # _model_server_result.job_id oPhOdU5yUgdOgSi_rSUl3A _model_server_result.datetime_utc '2024-12-16 21:46:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":639}' # _entry.id 1EAB # _exptl.entry_id 1EAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.357 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6,8-DIMERCAPTO-OCTANOIC ACID AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EAB _cell.length_a 225.54 _cell.length_b 225.54 _cell.length_c 225.54 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H17 N O S2' _chem_comp.formula_weight 207.357 _chem_comp.id LPM _chem_comp.mon_nstd_flag . _chem_comp.name '6,8-DIMERCAPTO-OCTANOIC ACID AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O LPM doub 280 n n C1 N LPM sing 281 n n C1 C2 LPM sing 282 n n N HN1 LPM sing 283 n n N HN2 LPM sing 284 n n C2 C3 LPM sing 285 n n C2 H21 LPM sing 286 n n C2 H22 LPM sing 287 n n C3 C4 LPM sing 288 n n C3 H31 LPM sing 289 n n C3 H32 LPM sing 290 n n C4 C5 LPM sing 291 n n C4 H41 LPM sing 292 n n C4 H42 LPM sing 293 n n C5 C6 LPM sing 294 n n C5 H51 LPM sing 295 n n C5 H52 LPM sing 296 n n C6 S6 LPM sing 297 n n C6 C7 LPM sing 298 n n C6 H6 LPM sing 299 n n S6 HS6 LPM sing 300 n n C7 C8 LPM sing 301 n n C7 H71 LPM sing 302 n n C7 H72 LPM sing 303 n n C8 S8 LPM sing 304 n n C8 H81 LPM sing 305 n n C8 H82 LPM sing 306 n n S8 HS8 LPM sing 307 n n # _atom_sites.entry_id 1EAB _atom_sites.fract_transf_matrix[1][1] 0.004434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 638 638 COA COA . C 3 LPM A 1 639 639 LPM LPM . D 4 HOH A 1 640 640 HOH HOH . D 4 HOH A 2 641 641 HOH HOH . D 4 HOH A 3 642 642 HOH HOH . D 4 HOH A 4 643 643 HOH HOH . D 4 HOH A 5 644 644 HOH HOH . D 4 HOH A 6 645 645 HOH HOH . D 4 HOH A 7 646 646 HOH HOH . D 4 HOH A 8 647 647 HOH HOH . D 4 HOH A 9 648 648 HOH HOH . D 4 HOH A 10 649 649 HOH HOH . D 4 HOH A 11 650 650 HOH HOH . D 4 HOH A 12 651 651 HOH HOH . D 4 HOH A 13 652 652 HOH HOH . D 4 HOH A 14 653 653 HOH HOH . D 4 HOH A 15 654 654 HOH HOH . D 4 HOH A 16 655 655 HOH HOH . D 4 HOH A 17 656 656 HOH HOH . D 4 HOH A 18 657 657 HOH HOH . D 4 HOH A 19 658 658 HOH HOH . D 4 HOH A 20 659 659 HOH HOH . D 4 HOH A 21 660 660 HOH HOH . D 4 HOH A 22 661 661 HOH HOH . D 4 HOH A 23 662 662 HOH HOH . D 4 HOH A 24 663 663 HOH HOH . D 4 HOH A 25 664 664 HOH HOH . D 4 HOH A 26 665 665 HOH HOH . D 4 HOH A 27 666 666 HOH HOH . D 4 HOH A 28 667 667 HOH HOH . D 4 HOH A 29 668 668 HOH HOH . D 4 HOH A 30 669 669 HOH HOH . D 4 HOH A 31 670 670 HOH HOH . D 4 HOH A 32 671 671 HOH HOH . D 4 HOH A 33 672 672 HOH HOH . D 4 HOH A 34 673 673 HOH HOH . D 4 HOH A 35 674 674 HOH HOH . D 4 HOH A 36 675 675 HOH HOH . D 4 HOH A 37 676 676 HOH HOH . D 4 HOH A 38 677 677 HOH HOH . D 4 HOH A 39 678 678 HOH HOH . D 4 HOH A 40 679 679 HOH HOH . D 4 HOH A 41 680 680 HOH HOH . D 4 HOH A 42 681 681 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPM . . . C 3 52.955 37.318 28.703 0 62.51 ? C1 LPM 639 A 1 HETATM 2 O O LPM . . . C 3 54.117 37.311 29.108 0 62.4 ? O LPM 639 A 1 HETATM 3 N N LPM . . . C 3 52.715 37.443 27.409 0 62.41 ? N LPM 639 A 1 HETATM 4 C C2 LPM . . . C 3 51.809 37.238 29.698 1 62.43 ? C2 LPM 639 A 1 HETATM 5 C C3 LPM . . . C 3 50.785 36.139 29.489 1 63.14 ? C3 LPM 639 A 1 HETATM 6 C C4 LPM . . . C 3 49.76 36.325 28.331 1 63.71 ? C4 LPM 639 A 1 HETATM 7 C C5 LPM . . . C 3 48.353 36.959 28.543 1 63.74 ? C5 LPM 639 A 1 HETATM 8 C C6 LPM . . . C 3 47.202 36.135 27.989 1 63.75 ? C6 LPM 639 A 1 HETATM 9 S S6 LPM . . . C 3 47.677 35.259 26.481 1 64.96 ? S6 LPM 639 A 1 HETATM 10 C C7 LPM . . . C 3 46.63 35.151 28.966 1 64.14 ? C7 LPM 639 A 1 HETATM 11 C C8 LPM . . . C 3 45.616 34.264 28.274 1 65.02 ? C8 LPM 639 A 1 HETATM 12 S S8 LPM . . . C 3 44.504 33.397 29.42 1 65.36 ? S8 LPM 639 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 12 #