data_1EAU # _model_server_result.job_id XLKjbQRK7J4YpdxXwTVejg _model_server_result.datetime_utc '2024-11-22 13:03:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1EAU # _exptl.entry_id 1EAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.583 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[5-AMINO-6-OXO-2-(2-THIENYL)-1,6-DIHYDROPYRIMIDIN-1-YL)-N-[3,3-DIFLUORO -1-ISOPROPYL-2-OXO-3-(N-(2-MORPHOLINO ETHYL)CARBAMOYL]PROPYL]ACETAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EAU _cell.length_a 50.85 _cell.length_b 58.31 _cell.length_c 75.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 174 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 214 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 D C2 BDK . A BDK 1 1_555 A OG SER 188 A SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 B NA NA . A NA 3 1_555 A OE1 GLU 59 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 B NA NA . A NA 3 1_555 A O ASN 61 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 B NA NA . A NA 3 1_555 A O GLN 64 A GLN 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 B NA NA . A NA 3 1_555 A OD1 ASN 66 A ASN 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc5 B NA NA . A NA 3 1_555 A OE2 GLU 69 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc6 B NA NA . A NA 3 1_555 E O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'C23 H30 F2 N6 O5 S' _chem_comp.formula_weight 540.583 _chem_comp.id BDK _chem_comp.mon_nstd_flag . _chem_comp.name '2-[5-AMINO-6-OXO-2-(2-THIENYL)-1,6-DIHYDROPYRIMIDIN-1-YL)-N-[3,3-DIFLUORO -1-ISOPROPYL-2-OXO-3-(N-(2-MORPHOLINO ETHYL)CARBAMOYL]PROPYL]ACETAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BDK sing 70 n n C1 C17 BDK sing 71 n n C1 F1 BDK sing 72 n n C1 F2 BDK sing 73 n n C2 C3 BDK sing 74 n n C2 O1 BDK doub 75 n n C3 C4 BDK sing 76 n n C3 N1 BDK sing 77 n n C3 H3 BDK sing 78 n n C4 C5 BDK sing 79 n n C4 C6 BDK sing 80 n n C4 H4 BDK sing 81 n n C5 H51 BDK sing 82 n n C5 H52 BDK sing 83 n n C5 H53 BDK sing 84 n n C6 H61 BDK sing 85 n n C6 H62 BDK sing 86 n n C6 H63 BDK sing 87 n n C7 C8 BDK sing 88 n n C7 N1 BDK sing 89 n n C7 O2 BDK doub 90 n n C8 N2 BDK sing 91 n n C8 H81 BDK sing 92 n n C8 H82 BDK sing 93 n n C9 C10 BDK sing 94 n y C9 N2 BDK sing 95 n y C9 O3 BDK doub 96 n n C10 C11 BDK doub 97 n y C10 N4 BDK sing 98 n n C11 N3 BDK sing 99 n y C11 H11 BDK sing 100 n n C12 C13 BDK sing 101 n y C12 N2 BDK sing 102 n y C12 N3 BDK doub 103 n y C13 C14 BDK doub 104 n y C13 S1 BDK sing 105 n y C14 C15 BDK sing 106 n y C14 H14 BDK sing 107 n n C15 C16 BDK doub 108 n y C15 H15 BDK sing 109 n n C16 S1 BDK sing 110 n y C16 H16 BDK sing 111 n n C17 N5 BDK sing 112 n n C17 O4 BDK doub 113 n n C18 C19 BDK sing 114 n n C18 N5 BDK sing 115 n n C18 H181 BDK sing 116 n n C18 H182 BDK sing 117 n n C19 N6 BDK sing 118 n n C19 H191 BDK sing 119 n n C19 H192 BDK sing 120 n n C20 C21 BDK sing 121 n n C20 N6 BDK sing 122 n n C20 H201 BDK sing 123 n n C20 H202 BDK sing 124 n n C21 O5 BDK sing 125 n n C21 H211 BDK sing 126 n n C21 H212 BDK sing 127 n n C22 C23 BDK sing 128 n n C22 O5 BDK sing 129 n n C22 H221 BDK sing 130 n n C22 H222 BDK sing 131 n n C23 N6 BDK sing 132 n n C23 H231 BDK sing 133 n n C23 H232 BDK sing 134 n n N1 HN1 BDK sing 135 n n N4 HN41 BDK sing 136 n n N4 HN42 BDK sing 137 n n N5 HN5 BDK sing 138 n n # _atom_sites.entry_id 1EAU _atom_sites.fract_transf_matrix[1][1] 0.019666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 3 3 NA NA . C 3 SO4 A 1 2 2 SO4 SO4 . D 4 BDK A 1 1 1 BDK BDK . E 5 HOH A 1 246 5 HOH HOH . E 5 HOH A 2 247 6 HOH HOH . E 5 HOH A 3 248 7 HOH HOH . E 5 HOH A 4 249 8 HOH HOH . E 5 HOH A 5 250 9 HOH HOH . E 5 HOH A 6 251 10 HOH HOH . E 5 HOH A 7 252 11 HOH HOH . E 5 HOH A 8 253 12 HOH HOH . E 5 HOH A 9 254 13 HOH HOH . E 5 HOH A 10 255 14 HOH HOH . E 5 HOH A 11 256 15 HOH HOH . E 5 HOH A 12 257 16 HOH HOH . E 5 HOH A 13 258 17 HOH HOH . E 5 HOH A 14 259 18 HOH HOH . E 5 HOH A 15 260 19 HOH HOH . E 5 HOH A 16 261 20 HOH HOH . E 5 HOH A 17 262 21 HOH HOH . E 5 HOH A 18 263 22 HOH HOH . E 5 HOH A 19 264 23 HOH HOH . E 5 HOH A 20 265 24 HOH HOH . E 5 HOH A 21 266 25 HOH HOH . E 5 HOH A 22 267 26 HOH HOH . E 5 HOH A 23 268 27 HOH HOH . E 5 HOH A 24 269 28 HOH HOH . E 5 HOH A 25 270 29 HOH HOH . E 5 HOH A 26 271 31 HOH HOH . E 5 HOH A 27 272 32 HOH HOH . E 5 HOH A 28 273 33 HOH HOH . E 5 HOH A 29 274 34 HOH HOH . E 5 HOH A 30 275 35 HOH HOH . E 5 HOH A 31 276 37 HOH HOH . E 5 HOH A 32 277 38 HOH HOH . E 5 HOH A 33 278 39 HOH HOH . E 5 HOH A 34 279 40 HOH HOH . E 5 HOH A 35 280 41 HOH HOH . E 5 HOH A 36 281 42 HOH HOH . E 5 HOH A 37 282 43 HOH HOH . E 5 HOH A 38 283 44 HOH HOH . E 5 HOH A 39 284 45 HOH HOH . E 5 HOH A 40 285 46 HOH HOH . E 5 HOH A 41 286 47 HOH HOH . E 5 HOH A 42 287 48 HOH HOH . E 5 HOH A 43 288 49 HOH HOH . E 5 HOH A 44 289 51 HOH HOH . E 5 HOH A 45 290 52 HOH HOH . E 5 HOH A 46 291 54 HOH HOH . E 5 HOH A 47 292 58 HOH HOH . E 5 HOH A 48 293 60 HOH HOH . E 5 HOH A 49 294 61 HOH HOH . E 5 HOH A 50 295 64 HOH HOH . E 5 HOH A 51 296 66 HOH HOH . E 5 HOH A 52 297 67 HOH HOH . E 5 HOH A 53 298 70 HOH HOH . E 5 HOH A 54 299 73 HOH HOH . E 5 HOH A 55 300 74 HOH HOH . E 5 HOH A 56 301 78 HOH HOH . E 5 HOH A 57 302 80 HOH HOH . E 5 HOH A 58 303 83 HOH HOH . E 5 HOH A 59 304 84 HOH HOH . E 5 HOH A 60 305 86 HOH HOH . E 5 HOH A 61 306 87 HOH HOH . E 5 HOH A 62 307 88 HOH HOH . E 5 HOH A 63 308 90 HOH HOH . E 5 HOH A 64 309 93 HOH HOH . E 5 HOH A 65 310 97 HOH HOH . E 5 HOH A 66 311 101 HOH HOH . E 5 HOH A 67 312 103 HOH HOH . E 5 HOH A 68 313 107 HOH HOH . E 5 HOH A 69 314 113 HOH HOH . E 5 HOH A 70 315 114 HOH HOH . E 5 HOH A 71 316 115 HOH HOH . E 5 HOH A 72 317 117 HOH HOH . E 5 HOH A 73 318 118 HOH HOH . E 5 HOH A 74 319 120 HOH HOH . E 5 HOH A 75 320 125 HOH HOH . E 5 HOH A 76 321 127 HOH HOH . E 5 HOH A 77 322 131 HOH HOH . E 5 HOH A 78 323 132 HOH HOH . E 5 HOH A 79 324 133 HOH HOH . E 5 HOH A 80 325 134 HOH HOH . E 5 HOH A 81 326 135 HOH HOH . E 5 HOH A 82 327 136 HOH HOH . E 5 HOH A 83 328 137 HOH HOH . E 5 HOH A 84 329 138 HOH HOH . E 5 HOH A 85 330 139 HOH HOH . E 5 HOH A 86 331 143 HOH HOH . E 5 HOH A 87 332 144 HOH HOH . E 5 HOH A 88 333 147 HOH HOH . E 5 HOH A 89 334 148 HOH HOH . E 5 HOH A 90 335 149 HOH HOH . E 5 HOH A 91 336 152 HOH HOH . E 5 HOH A 92 337 153 HOH HOH . E 5 HOH A 93 338 155 HOH HOH . E 5 HOH A 94 339 156 HOH HOH . E 5 HOH A 95 340 157 HOH HOH . E 5 HOH A 96 341 158 HOH HOH . E 5 HOH A 97 342 161 HOH HOH . E 5 HOH A 98 343 162 HOH HOH . E 5 HOH A 99 344 163 HOH HOH . E 5 HOH A 100 345 164 HOH HOH . E 5 HOH A 101 346 165 HOH HOH . E 5 HOH A 102 347 166 HOH HOH . E 5 HOH A 103 348 168 HOH HOH . E 5 HOH A 104 349 170 HOH HOH . E 5 HOH A 105 350 171 HOH HOH . E 5 HOH A 106 351 173 HOH HOH . E 5 HOH A 107 352 174 HOH HOH . E 5 HOH A 108 353 175 HOH HOH . E 5 HOH A 109 354 176 HOH HOH . E 5 HOH A 110 355 177 HOH HOH . E 5 HOH A 111 356 178 HOH HOH . E 5 HOH A 112 357 179 HOH HOH . E 5 HOH A 113 358 180 HOH HOH . E 5 HOH A 114 359 181 HOH HOH . E 5 HOH A 115 360 182 HOH HOH . E 5 HOH A 116 361 183 HOH HOH . E 5 HOH A 117 362 184 HOH HOH . E 5 HOH A 118 363 185 HOH HOH . E 5 HOH A 119 364 186 HOH HOH . E 5 HOH A 120 365 187 HOH HOH . E 5 HOH A 121 366 188 HOH HOH . E 5 HOH A 122 367 189 HOH HOH . E 5 HOH A 123 368 190 HOH HOH . E 5 HOH A 124 369 191 HOH HOH . E 5 HOH A 125 370 192 HOH HOH . E 5 HOH A 126 371 193 HOH HOH . E 5 HOH A 127 372 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BDK . . . D 4 -7.383 22.549 36.519 1 16.56 ? C1 BDK 1 A 1 HETATM 2 C C2 BDK . . . D 4 -8.052 23.72 37.326 1 13.51 ? C2 BDK 1 A 1 HETATM 3 C C3 BDK . . . D 4 -9.568 23.609 37.433 1 13.21 ? C3 BDK 1 A 1 HETATM 4 C C4 BDK . . . D 4 -10.385 24.85 37.806 1 10.86 ? C4 BDK 1 A 1 HETATM 5 C C5 BDK . . . D 4 -11.84 24.728 37.441 1 5.89 ? C5 BDK 1 A 1 HETATM 6 C C6 BDK . . . D 4 -10.211 25.288 39.247 1 9.06 ? C6 BDK 1 A 1 HETATM 7 C C7 BDK . . . D 4 -10.545 21.374 37.871 1 17.33 ? C7 BDK 1 A 1 HETATM 8 C C8 BDK . . . D 4 -10.764 20.285 38.934 1 20.05 ? C8 BDK 1 A 1 HETATM 9 C C9 BDK . . . D 4 -13.228 20.193 38.65 1 19.48 ? C9 BDK 1 A 1 HETATM 10 C C10 BDK . . . D 4 -14.412 19.382 38.375 1 21.74 ? C10 BDK 1 A 1 HETATM 11 C C11 BDK . . . D 4 -14.266 18.052 38.299 1 20.84 ? C11 BDK 1 A 1 HETATM 12 C C12 BDK . . . D 4 -11.944 18.133 38.461 1 22.92 ? C12 BDK 1 A 1 HETATM 13 C C13 BDK . . . D 4 -10.662 17.376 38.328 1 22.69 ? C13 BDK 1 A 1 HETATM 14 C C14 BDK . . . D 4 -10.303 16.148 38.864 1 16.97 ? C14 BDK 1 A 1 HETATM 15 C C15 BDK . . . D 4 -9.009 15.749 38.48 1 17.05 ? C15 BDK 1 A 1 HETATM 16 C C16 BDK . . . D 4 -8.388 16.651 37.582 1 18.35 ? C16 BDK 1 A 1 HETATM 17 C C17 BDK . . . D 4 -7.421 22.861 34.999 1 16.81 ? C17 BDK 1 A 1 HETATM 18 C C18 BDK . . . D 4 -6.063 23.019 32.977 1 22.79 ? C18 BDK 1 A 1 HETATM 19 C C19 BDK . . . D 4 -6.22 24.369 32.314 1 28.27 ? C19 BDK 1 A 1 HETATM 20 C C20 BDK . . . D 4 -5.072 25.02 30.335 1 32.35 ? C20 BDK 1 A 1 HETATM 21 C C21 BDK . . . D 4 -5.088 25.005 28.818 1 32.28 ? C21 BDK 1 A 1 HETATM 22 C C22 BDK . . . D 4 -7.4 24.94 28.827 1 31.17 ? C22 BDK 1 A 1 HETATM 23 C C23 BDK . . . D 4 -7.421 24.944 30.343 1 30.28 ? C23 BDK 1 A 1 HETATM 24 N N1 BDK . . . D 4 -9.911 22.461 38.317 1 14.91 ? N1 BDK 1 A 1 HETATM 25 N N2 BDK . . . D 4 -12.013 19.517 38.684 1 21.71 ? N2 BDK 1 A 1 HETATM 26 N N3 BDK . . . D 4 -13.045 17.431 38.334 1 24.64 ? N3 BDK 1 A 1 HETATM 27 N N4 BDK . . . D 4 -15.634 20.055 38.211 1 21.98 ? N4 BDK 1 A 1 HETATM 28 N N5 BDK . . . D 4 -6.252 23.177 34.438 1 19.6 ? N5 BDK 1 A 1 HETATM 29 N N6 BDK . . . D 4 -6.224 24.295 30.863 1 29.82 ? N6 BDK 1 A 1 HETATM 30 O O1 BDK . . . D 4 -7.723 24.89 36.667 1 14.1 ? O1 BDK 1 A 1 HETATM 31 O O2 BDK . . . D 4 -10.968 21.253 36.731 1 19.06 ? O2 BDK 1 A 1 HETATM 32 O O3 BDK . . . D 4 -13.31 21.4 38.828 1 24.61 ? O3 BDK 1 A 1 HETATM 33 O O4 BDK . . . D 4 -8.473 22.917 34.408 1 17.64 ? O4 BDK 1 A 1 HETATM 34 O O5 BDK . . . D 4 -6.267 25.613 28.308 1 28.83 ? O5 BDK 1 A 1 HETATM 35 F F1 BDK . . . D 4 -6.13 22.361 36.9 1 15.75 ? F1 BDK 1 A 1 HETATM 36 F F2 BDK . . . D 4 -7.948 21.362 36.793 1 15.83 ? F2 BDK 1 A 1 HETATM 37 S S1 BDK . . . D 4 -9.397 18.017 37.335 1 29.22 ? S1 BDK 1 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #