data_1EB7 # _model_server_result.job_id aFtr6IibJAGupB9-x-T6NQ _model_server_result.datetime_utc '2024-11-23 16:17:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 1EB7 # _exptl.entry_id 1EB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1EB7 _cell.length_a 113.9 _cell.length_b 113.9 _cell.length_c 72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 51 A CYS 51 1_555 B CAB HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale2 A SG CYS 54 A CYS 54 1_555 B CAC HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc1 A NE2 HIS 55 A HIS 55 1_555 B FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc2 A NE2 HIS 71 A HIS 71 1_555 B FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? covale ? covale3 A SG CYS 197 A CYS 197 1_555 C CBB HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale4 A SG CYS 197 A CYS 197 1_555 C CAB HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale5 A SG CYS 200 A CYS 200 1_555 C CAC HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc3 A NE2 HIS 201 A HIS 201 1_555 C FE HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc4 C FE HEC . A HEC 402 1_555 A SD MET 275 A MET 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 D CA CA . A CA 403 1_555 E O HOH . A HOH 2048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 D CA CA . A CA 403 1_555 E O HOH . A HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc7 D CA CA . A CA 403 1_555 E O HOH . A HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc8 D CA CA . A CA 403 1_555 E O HOH . A HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc9 D CA CA . A CA 403 1_555 A O PRO 258 A PRO 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc10 D CA CA . A CA 403 1_555 A O THR 256 A THR 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc11 D CA CA . A CA 403 1_555 A OD1 ASN 79 A ASN 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1EB7 _atom_sites.fract_transf_matrix[1][1] 0.00878 _atom_sites.fract_transf_matrix[1][2] 0.005069 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 401 401 HEC HEC . C 2 HEC A 1 402 402 HEC HEC . D 3 CA A 1 403 403 CA CA . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . E 4 HOH A 69 2069 2069 HOH HOH . E 4 HOH A 70 2070 2070 HOH HOH . E 4 HOH A 71 2071 2071 HOH HOH . E 4 HOH A 72 2072 2072 HOH HOH . E 4 HOH A 73 2073 2073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 51.015 40.757 54.159 1 41.46 ? FE HEC 402 A 1 HETATM 2 C CHA HEC . . . C 2 48.382 40.927 52.143 1 39.8 ? CHA HEC 402 A 1 HETATM 3 C CHB HEC . . . C 2 49.903 43.374 55.908 1 41.35 ? CHB HEC 402 A 1 HETATM 4 C CHC HEC . . . C 2 53.377 40.155 56.453 1 42.02 ? CHC HEC 402 A 1 HETATM 5 C CHD HEC . . . C 2 52.337 38.276 52.248 1 42.87 ? CHD HEC 402 A 1 HETATM 6 N NA HEC . . . C 2 49.462 41.901 54.105 1 41.09 ? NA HEC 402 A 1 HETATM 7 C C1A HEC . . . C 2 48.421 41.842 53.196 1 39.65 ? C1A HEC 402 A 1 HETATM 8 C C2A HEC . . . C 2 47.416 42.901 53.443 1 39.6 ? C2A HEC 402 A 1 HETATM 9 C C3A HEC . . . C 2 47.884 43.595 54.509 1 36.71 ? C3A HEC 402 A 1 HETATM 10 C C4A HEC . . . C 2 49.145 42.967 54.887 1 38.42 ? C4A HEC 402 A 1 HETATM 11 C CMA HEC . . . C 2 47.238 44.81 55.114 1 29.69 ? CMA HEC 402 A 1 HETATM 12 C CAA HEC . . . C 2 46.143 43.178 52.608 1 36.65 ? CAA HEC 402 A 1 HETATM 13 C CBA HEC . . . C 2 46.41 44.299 51.598 1 37.85 ? CBA HEC 402 A 1 HETATM 14 C CGA HEC . . . C 2 45.304 44.437 50.544 1 37.06 ? CGA HEC 402 A 1 HETATM 15 O O1A HEC . . . C 2 45.345 45.409 49.746 1 37.27 ? O1A HEC 402 A 1 HETATM 16 O O2A HEC . . . C 2 44.397 43.574 50.488 1 38.27 ? O2A HEC 402 A 1 HETATM 17 N NB HEC . . . C 2 51.468 41.539 55.81 1 43.14 ? NB HEC 402 A 1 HETATM 18 C C1B HEC . . . C 2 50.95 42.658 56.393 1 43.07 ? C1B HEC 402 A 1 HETATM 19 C C2B HEC . . . C 2 51.599 42.956 57.651 1 42.15 ? C2B HEC 402 A 1 HETATM 20 C C3B HEC . . . C 2 52.578 41.995 57.865 1 43.46 ? C3B HEC 402 A 1 HETATM 21 C C4B HEC . . . C 2 52.47 41.145 56.686 1 43.62 ? C4B HEC 402 A 1 HETATM 22 C CMB HEC . . . C 2 51.209 44.165 58.46 1 37.83 ? CMB HEC 402 A 1 HETATM 23 C CAB HEC . . . C 2 53.545 41.701 59.026 1 43.46 ? CAB HEC 402 A 1 HETATM 24 C CBB HEC . . . C 2 53.114 42.11 60.425 1 36.57 ? CBB HEC 402 A 1 HETATM 25 N NC HEC . . . C 2 52.522 39.514 54.305 1 44.36 ? NC HEC 402 A 1 HETATM 26 C C1C HEC . . . C 2 53.429 39.399 55.33 1 42.29 ? C1C HEC 402 A 1 HETATM 27 C C2C HEC . . . C 2 54.528 38.476 55.027 1 42.28 ? C2C HEC 402 A 1 HETATM 28 C C3C HEC . . . C 2 54.243 37.984 53.794 1 42.55 ? C3C HEC 402 A 1 HETATM 29 C C4C HEC . . . C 2 53.004 38.622 53.38 1 42.78 ? C4C HEC 402 A 1 HETATM 30 C CMC HEC . . . C 2 55.817 38.284 55.826 1 38.43 ? CMC HEC 402 A 1 HETATM 31 C CAC HEC . . . C 2 55.06 37.073 52.923 1 41.04 ? CAC HEC 402 A 1 HETATM 32 C CBC HEC . . . C 2 54.894 35.615 53.206 1 37.35 ? CBC HEC 402 A 1 HETATM 33 N ND HEC . . . C 2 50.492 39.783 52.591 1 39.38 ? ND HEC 402 A 1 HETATM 34 C C1D HEC . . . C 2 51.105 38.728 51.955 1 41.93 ? C1D HEC 402 A 1 HETATM 35 C C2D HEC . . . C 2 50.257 38.088 50.969 1 36.39 ? C2D HEC 402 A 1 HETATM 36 C C3D HEC . . . C 2 49.131 38.774 50.955 1 38.69 ? C3D HEC 402 A 1 HETATM 37 C C4D HEC . . . C 2 49.314 39.904 51.903 1 39.63 ? C4D HEC 402 A 1 HETATM 38 C CMD HEC . . . C 2 50.515 36.832 50.167 1 35.05 ? CMD HEC 402 A 1 HETATM 39 C CAD HEC . . . C 2 47.853 38.387 50.205 1 38.03 ? CAD HEC 402 A 1 HETATM 40 C CBD HEC . . . C 2 47.036 37.263 50.771 1 35.09 ? CBD HEC 402 A 1 HETATM 41 C CGD HEC . . . C 2 45.687 37.127 50.111 1 34.59 ? CGD HEC 402 A 1 HETATM 42 O O1D HEC . . . C 2 45.266 38.033 49.358 1 38.76 ? O1D HEC 402 A 1 HETATM 43 O O2D HEC . . . C 2 45.013 36.107 50.353 1 34.97 ? O2D HEC 402 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #