data_1EBC # _model_server_result.job_id X9q2GbVDWN8xwDOMsHqZeg _model_server_result.datetime_utc '2024-11-29 08:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ebc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 1EBC # _exptl.entry_id 1EBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.63 _cell.angle_gamma 90 _cell.entry_id 1EBC _cell.length_a 64.87 _cell.length_b 31 _cell.length_c 35.29 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 D FE HEM . A HEM 154 1_555 B C CYN . A CYN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 D FE HEM . A HEM 154 1_555 B N CYN . A CYN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 1EBC _atom_sites.fract_transf_matrix[1][1] 0.015415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYN A 1 155 155 CYN CYN . C 3 SO4 A 1 160 160 SO4 SO4 . D 4 HEM A 1 154 154 HEM HEM . E 5 HOH A 1 502 502 HOH HOH . E 5 HOH A 2 503 503 HOH HOH . E 5 HOH A 3 504 504 HOH HOH . E 5 HOH A 4 505 505 HOH HOH . E 5 HOH A 5 506 506 HOH HOH . E 5 HOH A 6 507 507 HOH HOH . E 5 HOH A 7 508 508 HOH HOH . E 5 HOH A 8 509 509 HOH HOH . E 5 HOH A 9 511 511 HOH HOH . E 5 HOH A 10 512 512 HOH HOH . E 5 HOH A 11 513 513 HOH HOH . E 5 HOH A 12 514 514 HOH HOH . E 5 HOH A 13 515 515 HOH HOH . E 5 HOH A 14 516 516 HOH HOH . E 5 HOH A 15 518 518 HOH HOH . E 5 HOH A 16 519 519 HOH HOH . E 5 HOH A 17 520 520 HOH HOH . E 5 HOH A 18 521 521 HOH HOH . E 5 HOH A 19 522 522 HOH HOH . E 5 HOH A 20 524 524 HOH HOH . E 5 HOH A 21 526 526 HOH HOH . E 5 HOH A 22 527 527 HOH HOH . E 5 HOH A 23 528 528 HOH HOH . E 5 HOH A 24 530 530 HOH HOH . E 5 HOH A 25 531 531 HOH HOH . E 5 HOH A 26 532 532 HOH HOH . E 5 HOH A 27 533 533 HOH HOH . E 5 HOH A 28 534 534 HOH HOH . E 5 HOH A 29 535 535 HOH HOH . E 5 HOH A 30 536 536 HOH HOH . E 5 HOH A 31 537 537 HOH HOH . E 5 HOH A 32 538 538 HOH HOH . E 5 HOH A 33 539 539 HOH HOH . E 5 HOH A 34 545 545 HOH HOH . E 5 HOH A 35 546 546 HOH HOH . E 5 HOH A 36 547 547 HOH HOH . E 5 HOH A 37 548 548 HOH HOH . E 5 HOH A 38 549 549 HOH HOH . E 5 HOH A 39 550 550 HOH HOH . E 5 HOH A 40 551 551 HOH HOH . E 5 HOH A 41 553 553 HOH HOH . E 5 HOH A 42 554 554 HOH HOH . E 5 HOH A 43 555 555 HOH HOH . E 5 HOH A 44 556 556 HOH HOH . E 5 HOH A 45 558 558 HOH HOH . E 5 HOH A 46 561 561 HOH HOH . E 5 HOH A 47 562 562 HOH HOH . E 5 HOH A 48 563 563 HOH HOH . E 5 HOH A 49 565 565 HOH HOH . E 5 HOH A 50 566 566 HOH HOH . E 5 HOH A 51 568 568 HOH HOH . E 5 HOH A 52 569 569 HOH HOH . E 5 HOH A 53 571 571 HOH HOH . E 5 HOH A 54 572 572 HOH HOH . E 5 HOH A 55 574 574 HOH HOH . E 5 HOH A 56 578 578 HOH HOH . E 5 HOH A 57 588 588 HOH HOH . E 5 HOH A 58 594 594 HOH HOH . E 5 HOH A 59 595 595 HOH HOH . E 5 HOH A 60 602 602 HOH HOH . E 5 HOH A 61 603 603 HOH HOH . E 5 HOH A 62 606 606 HOH HOH . E 5 HOH A 63 607 607 HOH HOH . E 5 HOH A 64 609 609 HOH HOH . E 5 HOH A 65 610 610 HOH HOH . E 5 HOH A 66 612 612 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 11.036 -10.057 12.832 1 34.01 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . D 4 11.471 -6.919 16.544 1 30.91 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . D 4 13.933 -3.788 13.791 1 45.8 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . D 4 13.642 -6.947 10.153 1 32.88 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . D 4 10.964 -9.397 14.053 1 39.12 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . D 4 10.335 -9.984 15.213 1 54.21 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . D 4 10.43 -9.142 16.24 1 45.35 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . D 4 11.119 -7.979 15.757 1 31.7 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . D 4 9.978 -9.299 17.723 1 36.71 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . D 4 9.7 -11.379 15.148 1 40.97 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . D 4 10.539 -12.404 15.89 1 49.3 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . D 4 11.97 -12.25 15.512 0 80 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . D 4 12.783 -11.481 16.088 1 56.41 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . D 4 12.163 -12.897 14.494 1 40.43 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . D 4 12.146 -5.799 16.127 1 39.92 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . D 4 12.37 -4.631 16.911 1 43.28 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . D 4 13.058 -3.76 16.157 1 41.43 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . D 4 13.275 -4.367 14.872 1 37.48 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . D 4 11.839 -4.522 18.347 1 47.11 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . D 4 13.547 -2.341 16.452 1 34.93 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . D 4 12.763 -1.492 17.118 1 41.05 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . D 4 13.986 -4.338 12.522 1 31.69 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . D 4 14.417 -3.648 11.329 1 39.45 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . D 4 14.332 -4.531 10.299 1 49.35 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . D 4 13.89 -5.79 10.858 1 38.24 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . D 4 14.864 -2.177 11.429 1 33.22 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . D 4 14.659 -4.387 8.795 1 33.49 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . D 4 14.859 -3.154 8.321 1 36.08 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . D 4 12.846 -8.022 10.511 1 39.46 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . D 4 12.505 -9.171 9.677 1 64.62 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . D 4 11.836 -10.029 10.427 1 41.99 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . D 4 11.703 -9.481 11.759 1 59.44 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . D 4 12.892 -9.36 8.199 1 39.15 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . D 4 11.061 -11.243 9.956 1 35.7 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . D 4 9.695 -10.747 9.434 1 33.43 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . D 4 8.875 -11.914 9.018 1 43.12 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . D 4 9.156 -12.555 7.976 1 47.28 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . D 4 8.04 -12.3 9.829 1 51.99 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . D 4 11.452 -8.149 14.425 1 35.45 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . D 4 12.652 -5.595 14.858 1 32.04 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . D 4 13.63 -5.633 12.192 1 33.31 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . D 4 12.432 -8.288 11.792 1 33.67 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . D 4 12.561 -6.958 13.343 1 36.75 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #