data_1EBD # _model_server_result.job_id sMIx_Ec4yU3Bo5axTZdTww _model_server_result.datetime_utc '2024-10-12 10:19:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ebd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":462}' # _entry.id 1EBD # _exptl.entry_id 1EBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1EBD _cell.length_a 106.6 _cell.length_b 106.6 _cell.length_c 204.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 41 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 47 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 46 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 52 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.049 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1EBD _atom_sites.fract_transf_matrix[1][1] 0.009381 _atom_sites.fract_transf_matrix[1][2] 0.005416 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FAD A 1 462 462 FAD FAD . E 3 FAD B 1 462 462 FAD FAD . F 4 HOH A 1 463 1 HOH HOH . F 4 HOH A 2 464 3 HOH HOH . F 4 HOH A 3 465 4 HOH HOH . F 4 HOH A 4 466 6 HOH HOH . F 4 HOH A 5 467 9 HOH HOH . F 4 HOH A 6 468 12 HOH HOH . F 4 HOH A 7 469 13 HOH HOH . F 4 HOH A 8 470 14 HOH HOH . F 4 HOH A 9 471 15 HOH HOH . F 4 HOH A 10 472 16 HOH HOH . F 4 HOH A 11 473 17 HOH HOH . F 4 HOH A 12 474 22 HOH HOH . F 4 HOH A 13 475 23 HOH HOH . F 4 HOH A 14 476 25 HOH HOH . F 4 HOH A 15 477 30 HOH HOH . F 4 HOH A 16 478 32 HOH HOH . F 4 HOH A 17 479 33 HOH HOH . F 4 HOH A 18 480 34 HOH HOH . F 4 HOH A 19 481 35 HOH HOH . F 4 HOH A 20 482 36 HOH HOH . F 4 HOH A 21 483 37 HOH HOH . G 4 HOH B 1 463 2 HOH HOH . G 4 HOH B 2 464 5 HOH HOH . G 4 HOH B 3 465 7 HOH HOH . G 4 HOH B 4 466 8 HOH HOH . G 4 HOH B 5 467 10 HOH HOH . G 4 HOH B 6 468 11 HOH HOH . G 4 HOH B 7 469 18 HOH HOH . G 4 HOH B 8 470 19 HOH HOH . G 4 HOH B 9 471 20 HOH HOH . G 4 HOH B 10 472 21 HOH HOH . G 4 HOH B 11 473 24 HOH HOH . G 4 HOH B 12 474 26 HOH HOH . G 4 HOH B 13 475 27 HOH HOH . G 4 HOH B 14 476 28 HOH HOH . G 4 HOH B 15 477 29 HOH HOH . G 4 HOH B 16 478 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 3 84.176 90.123 33.605 1 29.36 ? PA FAD 462 A 1 HETATM 2 O O1A FAD . . . D 3 85.501 89.995 32.961 1 29.21 ? O1A FAD 462 A 1 HETATM 3 O O2A FAD . . . D 3 84.104 90.11 35.086 1 41.24 ? O2A FAD 462 A 1 HETATM 4 O O5B FAD . . . D 3 83.639 91.528 33.103 1 24.55 ? O5B FAD 462 A 1 HETATM 5 C C5B FAD . . . D 3 82.667 92.168 33.926 1 31.06 ? C5B FAD 462 A 1 HETATM 6 C C4B FAD . . . D 3 82.685 93.665 33.754 1 28.55 ? C4B FAD 462 A 1 HETATM 7 O O4B FAD . . . D 3 81.406 94.116 34.208 1 22.48 ? O4B FAD 462 A 1 HETATM 8 C C3B FAD . . . D 3 83.771 94.285 34.636 1 31 ? C3B FAD 462 A 1 HETATM 9 O O3B FAD . . . D 3 84.735 95.131 33.976 1 28.98 ? O3B FAD 462 A 1 HETATM 10 C C2B FAD . . . D 3 82.941 95.109 35.591 1 29.11 ? C2B FAD 462 A 1 HETATM 11 O O2B FAD . . . D 3 83.671 96.265 36.013 1 35.16 ? O2B FAD 462 A 1 HETATM 12 C C1B FAD . . . D 3 81.729 95.386 34.734 1 24.76 ? C1B FAD 462 A 1 HETATM 13 N N9A FAD . . . D 3 80.576 95.77 35.521 1 23.4 ? N9A FAD 462 A 1 HETATM 14 C C8A FAD . . . D 3 80.052 95.087 36.544 1 24.06 ? C8A FAD 462 A 1 HETATM 15 N N7A FAD . . . D 3 78.964 95.716 36.996 1 24.87 ? N7A FAD 462 A 1 HETATM 16 C C5A FAD . . . D 3 78.844 96.785 36.234 1 20.66 ? C5A FAD 462 A 1 HETATM 17 C C6A FAD . . . D 3 77.98 97.809 36.232 1 22.99 ? C6A FAD 462 A 1 HETATM 18 N N6A FAD . . . D 3 76.992 97.817 37.129 1 22.2 ? N6A FAD 462 A 1 HETATM 19 N N1A FAD . . . D 3 78.12 98.823 35.36 1 23.25 ? N1A FAD 462 A 1 HETATM 20 C C2A FAD . . . D 3 79.113 98.851 34.47 1 24.14 ? C2A FAD 462 A 1 HETATM 21 N N3A FAD . . . D 3 79.999 97.873 34.428 1 25.53 ? N3A FAD 462 A 1 HETATM 22 C C4A FAD . . . D 3 79.861 96.856 35.29 1 23.24 ? C4A FAD 462 A 1 HETATM 23 N N1 FAD . . . D 3 89.004 82.232 33.093 1 34.19 ? N1 FAD 462 A 1 HETATM 24 C C2 FAD . . . D 3 89.519 81.509 32.095 1 30.21 ? C2 FAD 462 A 1 HETATM 25 O O2 FAD . . . D 3 88.811 81.196 31.148 1 25.35 ? O2 FAD 462 A 1 HETATM 26 N N3 FAD . . . D 3 90.887 81.217 32.095 1 33.22 ? N3 FAD 462 A 1 HETATM 27 C C4 FAD . . . D 3 91.701 81.672 33.145 1 35.64 ? C4 FAD 462 A 1 HETATM 28 O O4 FAD . . . D 3 92.921 81.678 33.002 1 41.1 ? O4 FAD 462 A 1 HETATM 29 C C4X FAD . . . D 3 91.113 82.374 34.194 1 30.06 ? C4X FAD 462 A 1 HETATM 30 N N5 FAD . . . D 3 91.829 82.729 35.277 1 28.02 ? N5 FAD 462 A 1 HETATM 31 C C5X FAD . . . D 3 91.324 83.496 36.268 1 29.43 ? C5X FAD 462 A 1 HETATM 32 C C6 FAD . . . D 3 92.166 83.931 37.299 1 28.54 ? C6 FAD 462 A 1 HETATM 33 C C7 FAD . . . D 3 91.683 84.826 38.256 1 30.07 ? C7 FAD 462 A 1 HETATM 34 C C7M FAD . . . D 3 92.697 85.626 39.092 1 24.39 ? C7M FAD 462 A 1 HETATM 35 C C8 FAD . . . D 3 90.334 85.204 38.228 1 23.4 ? C8 FAD 462 A 1 HETATM 36 C C8M FAD . . . D 3 89.867 86.328 39.147 1 22.78 ? C8M FAD 462 A 1 HETATM 37 C C9 FAD . . . D 3 89.483 84.731 37.229 1 20.93 ? C9 FAD 462 A 1 HETATM 38 C C9A FAD . . . D 3 89.984 83.904 36.23 1 27.26 ? C9A FAD 462 A 1 HETATM 39 N N10 FAD . . . D 3 89.192 83.452 35.154 1 28.01 ? N10 FAD 462 A 1 HETATM 40 C C10 FAD . . . D 3 89.755 82.679 34.114 1 29.4 ? C10 FAD 462 A 1 HETATM 41 C C1' FAD . . . D 3 87.763 83.74 35.068 1 26.8 ? C1' FAD 462 A 1 HETATM 42 C C2' FAD . . . D 3 87.532 84.656 33.879 1 22.29 ? C2' FAD 462 A 1 HETATM 43 O O2' FAD . . . D 3 88.306 85.836 34.028 1 33.32 ? O2' FAD 462 A 1 HETATM 44 C C3' FAD . . . D 3 86.07 85.009 33.753 1 15.02 ? C3' FAD 462 A 1 HETATM 45 O O3' FAD . . . D 3 85.436 83.777 33.43 1 24.46 ? O3' FAD 462 A 1 HETATM 46 C C4' FAD . . . D 3 85.803 85.993 32.622 1 12.76 ? C4' FAD 462 A 1 HETATM 47 O O4' FAD . . . D 3 86.489 87.212 32.882 1 15.83 ? O4' FAD 462 A 1 HETATM 48 C C5' FAD . . . D 3 84.325 86.341 32.615 1 22.08 ? C5' FAD 462 A 1 HETATM 49 O O5' FAD . . . D 3 84.039 87.31 31.621 1 26.92 ? O5' FAD 462 A 1 HETATM 50 P P FAD . . . D 3 82.729 88.192 31.826 1 27.99 ? P FAD 462 A 1 HETATM 51 O O1P FAD . . . D 3 82.646 89.143 30.695 1 34.41 ? O1P FAD 462 A 1 HETATM 52 O O2P FAD . . . D 3 81.563 87.346 32.169 1 31.26 ? O2P FAD 462 A 1 HETATM 53 O O3P FAD . . . D 3 83.134 89 33.14 1 31.34 ? O3P FAD 462 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #