data_1EBT
#
_model_server_result.job_id            ZyzujNVqeFoipVdCFVRT2A 
_model_server_result.datetime_utc      '2024-11-18 11:53:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ebt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":144}' 
#
_entry.id    1EBT 
#
_exptl.entry_id    1EBT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.93 
_cell.angle_gamma         90 
_cell.entry_id            1EBT 
_cell.length_a            50.67 
_cell.length_b            38.76 
_cell.length_c            42.53 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EBT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 96 A HIS 96 1_555 C FE HEM . A HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc2 C FE HEM . A HEM 144 1_555 B C CYN . A CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc3 C FE HEM . A HEM 144 1_555 B N CYN . A CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 130 n n 
CHA C4D HEM doub 131 n n 
CHA HHA HEM sing 132 n n 
CHB C4A HEM sing 133 n n 
CHB C1B HEM doub 134 n n 
CHB HHB HEM sing 135 n n 
CHC C4B HEM sing 136 n n 
CHC C1C HEM doub 137 n n 
CHC HHC HEM sing 138 n n 
CHD C4C HEM doub 139 n n 
CHD C1D HEM sing 140 n n 
CHD HHD HEM sing 141 n n 
C1A C2A HEM doub 142 n y 
C1A NA HEM sing 143 n y 
C2A C3A HEM sing 144 n y 
C2A CAA HEM sing 145 n n 
C3A C4A HEM doub 146 n y 
C3A CMA HEM sing 147 n n 
C4A NA HEM sing 148 n y 
CMA HMA HEM sing 149 n n 
CMA HMAA HEM sing 150 n n 
CMA HMAB HEM sing 151 n n 
CAA CBA HEM sing 152 n n 
CAA HAA HEM sing 153 n n 
CAA HAAA HEM sing 154 n n 
CBA CGA HEM sing 155 n n 
CBA HBA HEM sing 156 n n 
CBA HBAA HEM sing 157 n n 
CGA O1A HEM doub 158 n n 
CGA O2A HEM sing 159 n n 
C1B C2B HEM sing 160 n n 
C1B NB HEM sing 161 n n 
C2B C3B HEM doub 162 n n 
C2B CMB HEM sing 163 n n 
C3B C4B HEM sing 164 n n 
C3B CAB HEM sing 165 n n 
C4B NB HEM doub 166 n n 
CMB HMB HEM sing 167 n n 
CMB HMBA HEM sing 168 n n 
CMB HMBB HEM sing 169 n n 
CAB CBB HEM doub 170 n n 
CAB HAB HEM sing 171 n n 
CBB HBB HEM sing 172 n n 
CBB HBBA HEM sing 173 n n 
C1C C2C HEM sing 174 n y 
C1C NC HEM sing 175 n y 
C2C C3C HEM doub 176 n y 
C2C CMC HEM sing 177 n n 
C3C C4C HEM sing 178 n y 
C3C CAC HEM sing 179 n n 
C4C NC HEM sing 180 n y 
CMC HMC HEM sing 181 n n 
CMC HMCA HEM sing 182 n n 
CMC HMCB HEM sing 183 n n 
CAC CBC HEM doub 184 n n 
CAC HAC HEM sing 185 n n 
CBC HBC HEM sing 186 n n 
CBC HBCA HEM sing 187 n n 
C1D C2D HEM sing 188 n n 
C1D ND HEM doub 189 n n 
C2D C3D HEM doub 190 n n 
C2D CMD HEM sing 191 n n 
C3D C4D HEM sing 192 n n 
C3D CAD HEM sing 193 n n 
C4D ND HEM sing 194 n n 
CMD HMD HEM sing 195 n n 
CMD HMDA HEM sing 196 n n 
CMD HMDB HEM sing 197 n n 
CAD CBD HEM sing 198 n n 
CAD HAD HEM sing 199 n n 
CAD HADA HEM sing 200 n n 
CBD CGD HEM sing 201 n n 
CBD HBD HEM sing 202 n n 
CBD HBDA HEM sing 203 n n 
CGD O1D HEM doub 204 n n 
CGD O2D HEM sing 205 n n 
O2A H2A HEM sing 206 n n 
O2D H2D HEM sing 207 n n 
FE NA HEM sing 208 n n 
FE NB HEM sing 209 n n 
FE NC HEM sing 210 n n 
FE ND HEM sing 211 n n 
#
_atom_sites.entry_id                     1EBT 
_atom_sites.fract_transf_matrix[1][1]    0.019736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0258 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024578 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CYN A 1 145 145 CYN CYN . 
C 3 HEM A 1 144 144 HEM HEM . 
D 4 HOH A 1 502 502 HOH HOH . 
D 4 HOH A 2 503 503 HOH HOH . 
D 4 HOH A 3 504 504 HOH HOH . 
D 4 HOH A 4 505 505 HOH HOH . 
D 4 HOH A 5 506 506 HOH HOH . 
D 4 HOH A 6 507 507 HOH HOH . 
D 4 HOH A 7 508 508 HOH HOH . 
D 4 HOH A 8 510 510 HOH HOH . 
D 4 HOH A 9 511 511 HOH HOH . 
D 4 HOH A 10 512 512 HOH HOH . 
D 4 HOH A 11 514 514 HOH HOH . 
D 4 HOH A 12 515 515 HOH HOH . 
D 4 HOH A 13 516 516 HOH HOH . 
D 4 HOH A 14 517 517 HOH HOH . 
D 4 HOH A 15 518 518 HOH HOH . 
D 4 HOH A 16 519 519 HOH HOH . 
D 4 HOH A 17 520 520 HOH HOH . 
D 4 HOH A 18 521 521 HOH HOH . 
D 4 HOH A 19 522 522 HOH HOH . 
D 4 HOH A 20 523 523 HOH HOH . 
D 4 HOH A 21 524 524 HOH HOH . 
D 4 HOH A 22 525 525 HOH HOH . 
D 4 HOH A 23 526 526 HOH HOH . 
D 4 HOH A 24 529 529 HOH HOH . 
D 4 HOH A 25 530 530 HOH HOH . 
D 4 HOH A 26 533 533 HOH HOH . 
D 4 HOH A 27 534 534 HOH HOH . 
D 4 HOH A 28 535 535 HOH HOH . 
D 4 HOH A 29 537 537 HOH HOH . 
D 4 HOH A 30 538 538 HOH HOH . 
D 4 HOH A 31 540 540 HOH HOH . 
D 4 HOH A 32 544 544 HOH HOH . 
D 4 HOH A 33 545 545 HOH HOH . 
D 4 HOH A 34 547 547 HOH HOH . 
D 4 HOH A 35 548 548 HOH HOH . 
D 4 HOH A 36 549 549 HOH HOH . 
D 4 HOH A 37 550 550 HOH HOH . 
D 4 HOH A 38 553 553 HOH HOH . 
D 4 HOH A 39 554 554 HOH HOH . 
D 4 HOH A 40 556 556 HOH HOH . 
D 4 HOH A 41 563 563 HOH HOH . 
D 4 HOH A 42 564 564 HOH HOH . 
D 4 HOH A 43 565 565 HOH HOH . 
D 4 HOH A 44 566 566 HOH HOH . 
D 4 HOH A 45 567 567 HOH HOH . 
D 4 HOH A 46 568 568 HOH HOH . 
D 4 HOH A 47 569 569 HOH HOH . 
D 4 HOH A 48 570 570 HOH HOH . 
D 4 HOH A 49 572 572 HOH HOH . 
D 4 HOH A 50 573 573 HOH HOH . 
D 4 HOH A 51 575 575 HOH HOH . 
D 4 HOH A 52 579 579 HOH HOH . 
D 4 HOH A 53 586 586 HOH HOH . 
D 4 HOH A 54 588 588 HOH HOH . 
D 4 HOH A 55 589 589 HOH HOH . 
D 4 HOH A 56 594 594 HOH HOH . 
D 4 HOH A 57 595 595 HOH HOH . 
D 4 HOH A 58 597 597 HOH HOH . 
D 4 HOH A 59 598 598 HOH HOH . 
D 4 HOH A 60 600 600 HOH HOH . 
D 4 HOH A 61 605 605 HOH HOH . 
D 4 HOH A 62 606 606 HOH HOH . 
D 4 HOH A 63 607 607 HOH HOH . 
D 4 HOH A 64 609 609 HOH HOH . 
D 4 HOH A 65 616 616 HOH HOH . 
D 4 HOH A 66 617 617 HOH HOH . 
D 4 HOH A 67 618 618 HOH HOH . 
D 4 HOH A 68 619 619 HOH HOH . 
D 4 HOH A 69 623 623 HOH HOH . 
D 4 HOH A 70 633 633 HOH HOH . 
D 4 HOH A 71 639 639 HOH HOH . 
D 4 HOH A 72 640 640 HOH HOH . 
D 4 HOH A 73 644 644 HOH HOH . 
D 4 HOH A 74 646 646 HOH HOH . 
D 4 HOH A 75 647 647 HOH HOH . 
D 4 HOH A 76 648 648 HOH HOH . 
D 4 HOH A 77 649 649 HOH HOH . 
D 4 HOH A 78 652 652 HOH HOH . 
D 4 HOH A 79 653 653 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 5.087 -6.882 21.247 1 24.45 ? CHA HEM 144 A 1 
HETATM 2 C CHB HEM . . . C 3 3.495 -3.215 18.551 1 24.41 ? CHB HEM 144 A 1 
HETATM 3 C CHC HEM . . . C 3 7.885 -1.384 18.55 1 21.66 ? CHC HEM 144 A 1 
HETATM 4 C CHD HEM . . . C 3 9.645 -5.4 20.575 1 28.6 ? CHD HEM 144 A 1 
HETATM 5 C C1A HEM . . . C 3 4.279 -5.937 20.639 1 30.85 ? C1A HEM 144 A 1 
HETATM 6 C C2A HEM . . . C 3 2.856 -6.027 20.59 1 31.11 ? C2A HEM 144 A 1 
HETATM 7 C C3A HEM . . . C 3 2.405 -5.036 19.853 1 32.99 ? C3A HEM 144 A 1 
HETATM 8 C C4A HEM . . . C 3 3.53 -4.277 19.405 1 24.34 ? C4A HEM 144 A 1 
HETATM 9 C CMA HEM . . . C 3 0.941 -4.723 19.504 1 23.71 ? CMA HEM 144 A 1 
HETATM 10 C CAA HEM . . . C 3 2.003 -7.105 21.275 1 23.85 ? CAA HEM 144 A 1 
HETATM 11 C CBA HEM . . . C 3 1.47 -6.63 22.625 1 23.71 ? CBA HEM 144 A 1 
HETATM 12 C CGA HEM . . . C 3 2.535 -6.653 23.695 1 38.6 ? CGA HEM 144 A 1 
HETATM 13 O O1A HEM . . . C 3 3 -7.754 24.06 1 44.84 ? O1A HEM 144 A 1 
HETATM 14 O O2A HEM . . . C 3 3.059 -5.574 24 1 37.85 ? O2A HEM 144 A 1 
HETATM 15 C C1B HEM . . . C 3 4.586 -2.457 18.263 1 20.27 ? C1B HEM 144 A 1 
HETATM 16 C C2B HEM . . . C 3 4.5 -1.26 17.461 1 23.04 ? C2B HEM 144 A 1 
HETATM 17 C C3B HEM . . . C 3 5.699 -0.694 17.465 1 29.88 ? C3B HEM 144 A 1 
HETATM 18 C C4B HEM . . . C 3 6.561 -1.558 18.255 1 22.85 ? C4B HEM 144 A 1 
HETATM 19 C CMB HEM . . . C 3 3.168 -0.88 16.78 1 24.77 ? CMB HEM 144 A 1 
HETATM 20 C CAB HEM . . . C 3 6.147 0.596 16.734 1 25 ? CAB HEM 144 A 1 
HETATM 21 C CBB HEM . . . C 3 7.119 1.295 17.289 1 46.72 ? CBB HEM 144 A 1 
HETATM 22 C C1C HEM . . . C 3 8.729 -2.357 19.078 1 25.6 ? C1C HEM 144 A 1 
HETATM 23 C C2C HEM . . . C 3 10.155 -2.268 19.102 1 30.48 ? C2C HEM 144 A 1 
HETATM 24 C C3C HEM . . . C 3 10.629 -3.378 19.64 1 29.51 ? C3C HEM 144 A 1 
HETATM 25 C C4C HEM . . . C 3 9.526 -4.171 19.994 1 28.88 ? C4C HEM 144 A 1 
HETATM 26 C CMC HEM . . . C 3 10.982 -1.087 18.545 1 29.97 ? CMC HEM 144 A 1 
HETATM 27 C CAC HEM . . . C 3 12.104 -3.791 19.933 1 24.58 ? CAC HEM 144 A 1 
HETATM 28 C CBC HEM . . . C 3 13.046 -2.893 20.27 1 27.83 ? CBC HEM 144 A 1 
HETATM 29 C C1D HEM . . . C 3 8.562 -6.156 20.932 1 21.04 ? C1D HEM 144 A 1 
HETATM 30 C C2D HEM . . . C 3 8.613 -7.48 21.577 1 27.16 ? C2D HEM 144 A 1 
HETATM 31 C C3D HEM . . . C 3 7.358 -7.884 21.793 1 24.56 ? C3D HEM 144 A 1 
HETATM 32 C C4D HEM . . . C 3 6.468 -6.873 21.222 1 22.78 ? C4D HEM 144 A 1 
HETATM 33 C CMD HEM . . . C 3 9.954 -8.134 21.969 1 29.72 ? CMD HEM 144 A 1 
HETATM 34 C CAD HEM . . . C 3 6.878 -9.196 22.42 1 25.41 ? CAD HEM 144 A 1 
HETATM 35 C CBD HEM . . . C 3 7.048 -10.402 21.453 1 32.27 ? CBD HEM 144 A 1 
HETATM 36 C CGD HEM . . . C 3 6.745 -11.767 22.033 1 41.74 ? CGD HEM 144 A 1 
HETATM 37 O O1D HEM . . . C 3 5.536 -12.093 22.055 1 39.28 ? O1D HEM 144 A 1 
HETATM 38 O O2D HEM . . . C 3 7.71 -12.433 22.512 1 49.01 ? O2D HEM 144 A 1 
HETATM 39 N NA HEM . . . C 3 4.693 -4.819 19.875 1 23.05 ? NA HEM 144 A 1 
HETATM 40 N NB HEM . . . C 3 5.827 -2.58 18.775 1 31.14 ? NB HEM 144 A 1 
HETATM 41 N NC HEM . . . C 3 8.332 -3.571 19.657 1 20.72 ? NC HEM 144 A 1 
HETATM 42 N ND HEM . . . C 3 7.277 -5.814 20.743 1 23.19 ? ND HEM 144 A 1 
HETATM 43 FE FE HEM . . . C 3 6.526 -4.236 19.781 1 28.56 ? FE HEM 144 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#