data_1EBT # _model_server_result.job_id pkvPoYgPFWAR4pkNsTQmgA _model_server_result.datetime_utc '2024-11-18 12:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ebt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":145}' # _entry.id 1EBT # _exptl.entry_id 1EBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.93 _cell.angle_gamma 90 _cell.entry_id 1EBT _cell.length_a 50.67 _cell.length_b 38.76 _cell.length_c 42.53 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 96 A HIS 96 1_555 C FE HEM . A HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 C FE HEM . A HEM 144 1_555 B C CYN . A CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 C FE HEM . A HEM 144 1_555 B N CYN . A CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1EBT _atom_sites.fract_transf_matrix[1][1] 0.019736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYN A 1 145 145 CYN CYN . C 3 HEM A 1 144 144 HEM HEM . D 4 HOH A 1 502 502 HOH HOH . D 4 HOH A 2 503 503 HOH HOH . D 4 HOH A 3 504 504 HOH HOH . D 4 HOH A 4 505 505 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 510 510 HOH HOH . D 4 HOH A 9 511 511 HOH HOH . D 4 HOH A 10 512 512 HOH HOH . D 4 HOH A 11 514 514 HOH HOH . D 4 HOH A 12 515 515 HOH HOH . D 4 HOH A 13 516 516 HOH HOH . D 4 HOH A 14 517 517 HOH HOH . D 4 HOH A 15 518 518 HOH HOH . D 4 HOH A 16 519 519 HOH HOH . D 4 HOH A 17 520 520 HOH HOH . D 4 HOH A 18 521 521 HOH HOH . D 4 HOH A 19 522 522 HOH HOH . D 4 HOH A 20 523 523 HOH HOH . D 4 HOH A 21 524 524 HOH HOH . D 4 HOH A 22 525 525 HOH HOH . D 4 HOH A 23 526 526 HOH HOH . D 4 HOH A 24 529 529 HOH HOH . D 4 HOH A 25 530 530 HOH HOH . D 4 HOH A 26 533 533 HOH HOH . D 4 HOH A 27 534 534 HOH HOH . D 4 HOH A 28 535 535 HOH HOH . D 4 HOH A 29 537 537 HOH HOH . D 4 HOH A 30 538 538 HOH HOH . D 4 HOH A 31 540 540 HOH HOH . D 4 HOH A 32 544 544 HOH HOH . D 4 HOH A 33 545 545 HOH HOH . D 4 HOH A 34 547 547 HOH HOH . D 4 HOH A 35 548 548 HOH HOH . D 4 HOH A 36 549 549 HOH HOH . D 4 HOH A 37 550 550 HOH HOH . D 4 HOH A 38 553 553 HOH HOH . D 4 HOH A 39 554 554 HOH HOH . D 4 HOH A 40 556 556 HOH HOH . D 4 HOH A 41 563 563 HOH HOH . D 4 HOH A 42 564 564 HOH HOH . D 4 HOH A 43 565 565 HOH HOH . D 4 HOH A 44 566 566 HOH HOH . D 4 HOH A 45 567 567 HOH HOH . D 4 HOH A 46 568 568 HOH HOH . D 4 HOH A 47 569 569 HOH HOH . D 4 HOH A 48 570 570 HOH HOH . D 4 HOH A 49 572 572 HOH HOH . D 4 HOH A 50 573 573 HOH HOH . D 4 HOH A 51 575 575 HOH HOH . D 4 HOH A 52 579 579 HOH HOH . D 4 HOH A 53 586 586 HOH HOH . D 4 HOH A 54 588 588 HOH HOH . D 4 HOH A 55 589 589 HOH HOH . D 4 HOH A 56 594 594 HOH HOH . D 4 HOH A 57 595 595 HOH HOH . D 4 HOH A 58 597 597 HOH HOH . D 4 HOH A 59 598 598 HOH HOH . D 4 HOH A 60 600 600 HOH HOH . D 4 HOH A 61 605 605 HOH HOH . D 4 HOH A 62 606 606 HOH HOH . D 4 HOH A 63 607 607 HOH HOH . D 4 HOH A 64 609 609 HOH HOH . D 4 HOH A 65 616 616 HOH HOH . D 4 HOH A 66 617 617 HOH HOH . D 4 HOH A 67 618 618 HOH HOH . D 4 HOH A 68 619 619 HOH HOH . D 4 HOH A 69 623 623 HOH HOH . D 4 HOH A 70 633 633 HOH HOH . D 4 HOH A 71 639 639 HOH HOH . D 4 HOH A 72 640 640 HOH HOH . D 4 HOH A 73 644 644 HOH HOH . D 4 HOH A 74 646 646 HOH HOH . D 4 HOH A 75 647 647 HOH HOH . D 4 HOH A 76 648 648 HOH HOH . D 4 HOH A 77 649 649 HOH HOH . D 4 HOH A 78 652 652 HOH HOH . D 4 HOH A 79 653 653 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . B 2 7.038 -5.435 17.6 1 25.1 ? C CYN 145 A 1 HETATM 2 N N CYN . . . B 2 5.827 -5.346 17.465 1 38.91 ? N CYN 145 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 2 #