data_1EBY
#
_model_server_result.job_id            8PM6_XNYHATmLevR-VojVQ 
_model_server_result.datetime_utc      '2025-01-02 18:53:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1eby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    1EBY 
#
_exptl.entry_id    1EBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              652.733 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N,N-[2,5-O-DIBENZYL-GLUCARYL]-DI-[1-AMINO-INDAN-2-OL] 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EBY 
_cell.length_a            59.15 
_cell.length_b            86.98 
_cell.length_c            47.16 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C38 H40 N2 O8' 
_chem_comp.formula_weight    652.733 
_chem_comp.id                BEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N,N-[2,5-O-DIBENZYL-GLUCARYL]-DI-[1-AMINO-INDAN-2-OL] 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'INHIBITOR BEA369' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C24 BEB doub 70 n y 
C23 C28 BEB sing 71 n y 
C23 C22 BEB sing 72 n n 
C24 C25 BEB sing 73 n y 
C24 H24 BEB sing 74 n n 
C25 C26 BEB doub 75 n y 
C25 H25 BEB sing 76 n n 
C26 C27 BEB sing 77 n y 
C26 H26 BEB sing 78 n n 
C27 C28 BEB doub 79 n y 
C27 H27 BEB sing 80 n n 
C28 H28 BEB sing 81 n n 
C33 C34 BEB doub 82 n y 
C33 C38 BEB sing 83 n y 
C33 C32 BEB sing 84 n n 
C34 C35 BEB sing 85 n y 
C34 H34 BEB sing 86 n n 
C35 C36 BEB doub 87 n y 
C35 H35 BEB sing 88 n n 
C36 C37 BEB sing 89 n y 
C36 H36 BEB sing 90 n n 
C37 C38 BEB doub 91 n y 
C37 H37 BEB sing 92 n n 
C38 H38 BEB sing 93 n n 
C32 O31 BEB sing 94 n n 
C32 H321 BEB sing 95 n n 
C32 H322 BEB sing 96 n n 
O31 C9 BEB sing 97 n n 
C9 C7 BEB sing 98 n n 
C9 C10 BEB sing 99 n n 
C9 H9 BEB sing 100 n n 
C7 C5 BEB sing 101 n n 
C7 O8 BEB sing 102 n n 
C7 H7 BEB sing 103 n n 
C5 C4 BEB sing 104 n n 
C5 O6 BEB sing 105 n n 
C5 H5 BEB sing 106 n n 
C4 C2 BEB sing 107 n n 
C4 O21 BEB sing 108 n n 
C4 H4 BEB sing 109 n n 
C2 O3 BEB doub 110 n n 
C2 N1 BEB sing 111 n n 
N1 C41 BEB sing 112 n n 
N1 HN1 BEB sing 113 n n 
O21 C22 BEB sing 114 n n 
C22 H221 BEB sing 115 n n 
C22 H222 BEB sing 116 n n 
O6 HO6 BEB sing 117 n n 
O8 HO8 BEB sing 118 n n 
C10 O11 BEB doub 119 n n 
C10 N12 BEB sing 120 n n 
N12 C51 BEB sing 121 n n 
N12 H12 BEB sing 122 n n 
C51 C52 BEB sing 123 n n 
C51 C59 BEB sing 124 n n 
C51 H51 BEB sing 125 n n 
C52 C57 BEB doub 126 n y 
C52 C53 BEB sing 127 n y 
C57 C56 BEB sing 128 n y 
C57 C58 BEB sing 129 n n 
C53 C54 BEB doub 130 n y 
C53 H53 BEB sing 131 n n 
C54 C55 BEB sing 132 n y 
C54 H54 BEB sing 133 n n 
C55 C56 BEB doub 134 n y 
C55 H55 BEB sing 135 n n 
C59 O60 BEB sing 136 n n 
C59 C58 BEB sing 137 n n 
C59 H59 BEB sing 138 n n 
O60 H60 BEB sing 139 n n 
C56 H56 BEB sing 140 n n 
C58 H581 BEB sing 141 n n 
C58 H582 BEB sing 142 n n 
C41 C42 BEB sing 143 n n 
C41 C49 BEB sing 144 n n 
C41 H41 BEB sing 145 n n 
C42 C47 BEB doub 146 n y 
C42 C43 BEB sing 147 n y 
C47 C46 BEB sing 148 n y 
C47 C48 BEB sing 149 n n 
C43 C44 BEB doub 150 n y 
C43 H43 BEB sing 151 n n 
C44 C45 BEB sing 152 n y 
C44 H44 BEB sing 153 n n 
C45 C46 BEB doub 154 n y 
C45 H45 BEB sing 155 n n 
C49 O50 BEB sing 156 n n 
C49 C48 BEB sing 157 n n 
C49 H49 BEB sing 158 n n 
O50 H50 BEB sing 159 n n 
C46 H46 BEB sing 160 n n 
C48 H481 BEB sing 161 n n 
C48 H482 BEB sing 162 n n 
#
_atom_sites.entry_id                     1EBY 
_atom_sites.fract_transf_matrix[1][1]    0.016906 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021204 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BEB B 1 501 501 BEB BEB . 
D 3 HOH A 1 301 301 HOH HOH . 
D 3 HOH A 2 302 302 HOH HOH . 
D 3 HOH A 3 305 305 HOH HOH . 
D 3 HOH A 4 308 308 HOH HOH . 
D 3 HOH A 5 310 310 HOH HOH . 
D 3 HOH A 6 311 311 HOH HOH . 
D 3 HOH A 7 312 312 HOH HOH . 
D 3 HOH A 8 313 313 HOH HOH . 
D 3 HOH A 9 314 314 HOH HOH . 
D 3 HOH A 10 315 315 HOH HOH . 
D 3 HOH A 11 317 317 HOH HOH . 
D 3 HOH A 12 320 320 HOH HOH . 
D 3 HOH A 13 321 321 HOH HOH . 
D 3 HOH A 14 323 323 HOH HOH . 
D 3 HOH A 15 325 325 HOH HOH . 
D 3 HOH A 16 326 326 HOH HOH . 
D 3 HOH A 17 332 332 HOH HOH . 
D 3 HOH A 18 335 335 HOH HOH . 
D 3 HOH A 19 344 344 HOH HOH . 
D 3 HOH A 20 345 345 HOH HOH . 
D 3 HOH A 21 346 346 HOH HOH . 
D 3 HOH A 22 348 348 HOH HOH . 
D 3 HOH A 23 351 351 HOH HOH . 
D 3 HOH A 24 356 356 HOH HOH . 
D 3 HOH A 25 359 359 HOH HOH . 
D 3 HOH A 26 362 362 HOH HOH . 
D 3 HOH A 27 366 366 HOH HOH . 
D 3 HOH A 28 368 368 HOH HOH . 
D 3 HOH A 29 369 369 HOH HOH . 
D 3 HOH A 30 370 370 HOH HOH . 
D 3 HOH A 31 371 371 HOH HOH . 
D 3 HOH A 32 372 372 HOH HOH . 
D 3 HOH A 33 378 378 HOH HOH . 
D 3 HOH A 34 382 382 HOH HOH . 
D 3 HOH A 35 383 383 HOH HOH . 
D 3 HOH A 36 385 385 HOH HOH . 
D 3 HOH A 37 386 386 HOH HOH . 
D 3 HOH A 38 387 387 HOH HOH . 
D 3 HOH A 39 394 394 HOH HOH . 
D 3 HOH A 40 395 395 HOH HOH . 
E 3 HOH B 1 303 303 HOH HOH . 
E 3 HOH B 2 304 304 HOH HOH . 
E 3 HOH B 3 306 306 HOH HOH . 
E 3 HOH B 4 307 307 HOH HOH . 
E 3 HOH B 5 309 309 HOH HOH . 
E 3 HOH B 6 316 316 HOH HOH . 
E 3 HOH B 7 318 318 HOH HOH . 
E 3 HOH B 8 319 319 HOH HOH . 
E 3 HOH B 9 322 322 HOH HOH . 
E 3 HOH B 10 324 324 HOH HOH . 
E 3 HOH B 11 327 327 HOH HOH . 
E 3 HOH B 12 328 328 HOH HOH . 
E 3 HOH B 13 329 329 HOH HOH . 
E 3 HOH B 14 330 330 HOH HOH . 
E 3 HOH B 15 331 331 HOH HOH . 
E 3 HOH B 16 333 333 HOH HOH . 
E 3 HOH B 17 334 334 HOH HOH . 
E 3 HOH B 18 336 336 HOH HOH . 
E 3 HOH B 19 337 337 HOH HOH . 
E 3 HOH B 20 338 338 HOH HOH . 
E 3 HOH B 21 339 339 HOH HOH . 
E 3 HOH B 22 340 340 HOH HOH . 
E 3 HOH B 23 341 341 HOH HOH . 
E 3 HOH B 24 342 342 HOH HOH . 
E 3 HOH B 25 343 343 HOH HOH . 
E 3 HOH B 26 347 347 HOH HOH . 
E 3 HOH B 27 349 349 HOH HOH . 
E 3 HOH B 28 350 350 HOH HOH . 
E 3 HOH B 29 352 352 HOH HOH . 
E 3 HOH B 30 353 353 HOH HOH . 
E 3 HOH B 31 354 354 HOH HOH . 
E 3 HOH B 32 355 355 HOH HOH . 
E 3 HOH B 33 357 357 HOH HOH . 
E 3 HOH B 34 358 358 HOH HOH . 
E 3 HOH B 35 360 360 HOH HOH . 
E 3 HOH B 36 361 361 HOH HOH . 
E 3 HOH B 37 363 363 HOH HOH . 
E 3 HOH B 38 364 364 HOH HOH . 
E 3 HOH B 39 365 365 HOH HOH . 
E 3 HOH B 40 367 367 HOH HOH . 
E 3 HOH B 41 373 373 HOH HOH . 
E 3 HOH B 42 374 374 HOH HOH . 
E 3 HOH B 43 375 375 HOH HOH . 
E 3 HOH B 44 376 376 HOH HOH . 
E 3 HOH B 45 377 377 HOH HOH . 
E 3 HOH B 46 379 379 HOH HOH . 
E 3 HOH B 47 380 380 HOH HOH . 
E 3 HOH B 48 381 381 HOH HOH . 
E 3 HOH B 49 384 384 HOH HOH . 
E 3 HOH B 50 388 388 HOH HOH . 
E 3 HOH B 51 389 389 HOH HOH . 
E 3 HOH B 52 390 390 HOH HOH . 
E 3 HOH B 53 391 391 HOH HOH . 
E 3 HOH B 54 392 392 HOH HOH . 
E 3 HOH B 55 393 393 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 BEB . . . C 2 9.844 24.207 2.241 1 18.07 ? C23 BEB 501 B 1 
HETATM 2 C C24 BEB . . . C 2 9.231 25.405 1.795 1 18.21 ? C24 BEB 501 B 1 
HETATM 3 C C25 BEB . . . C 2 7.825 25.575 1.912 1 17.85 ? C25 BEB 501 B 1 
HETATM 4 C C26 BEB . . . C 2 7.026 24.542 2.48 1 17.68 ? C26 BEB 501 B 1 
HETATM 5 C C27 BEB . . . C 2 7.638 23.339 2.929 1 18.38 ? C27 BEB 501 B 1 
HETATM 6 C C28 BEB . . . C 2 9.043 23.172 2.81 1 18.79 ? C28 BEB 501 B 1 
HETATM 7 C C33 BEB . . . C 2 16.617 22.167 8.846 1 16.14 ? C33 BEB 501 B 1 
HETATM 8 C C34 BEB . . . C 2 15.897 21.182 9.59 1 18.4 ? C34 BEB 501 B 1 
HETATM 9 C C35 BEB . . . C 2 16.568 20.03 10.094 1 19.23 ? C35 BEB 501 B 1 
HETATM 10 C C36 BEB . . . C 2 17.96 19.859 9.854 1 17.2 ? C36 BEB 501 B 1 
HETATM 11 C C37 BEB . . . C 2 18.681 20.839 9.114 1 17.6 ? C37 BEB 501 B 1 
HETATM 12 C C38 BEB . . . C 2 18.01 21.99 8.61 1 16.16 ? C38 BEB 501 B 1 
HETATM 13 C C32 BEB . . . C 2 15.89 23.402 8.288 1 16.29 ? C32 BEB 501 B 1 
HETATM 14 O O31 BEB . . . C 2 14.796 23.116 7.367 1 18.98 ? O31 BEB 501 B 1 
HETATM 15 C C9 BEB . . . C 2 15.18 22.685 6.028 1 15.88 ? C9 BEB 501 B 1 
HETATM 16 C C7 BEB . . . C 2 14.063 23.059 5.031 1 17.71 ? C7 BEB 501 B 1 
HETATM 17 C C5 BEB . . . C 2 13.594 24.513 5.108 1 16.58 ? C5 BEB 501 B 1 
HETATM 18 C C4 BEB . . . C 2 12.221 24.732 4.356 1 14.28 ? C4 BEB 501 B 1 
HETATM 19 C C2 BEB . . . C 2 11.034 24.726 5.312 1 14.6 ? C2 BEB 501 B 1 
HETATM 20 O O3 BEB . . . C 2 10.818 23.713 5.961 1 17.2 ? O3 BEB 501 B 1 
HETATM 21 N N1 BEB . . . C 2 10.261 25.803 5.36 1 11.11 ? N1 BEB 501 B 1 
HETATM 22 O O21 BEB . . . C 2 12.038 23.665 3.357 1 16.92 ? O21 BEB 501 B 1 
HETATM 23 C C22 BEB . . . C 2 11.362 24.033 2.126 1 16.63 ? C22 BEB 501 B 1 
HETATM 24 O O6 BEB . . . C 2 14.64 25.294 4.491 1 8.85 ? O6 BEB 501 B 1 
HETATM 25 O O8 BEB . . . C 2 14.58 22.836 3.691 1 23.11 ? O8 BEB 501 B 1 
HETATM 26 C C10 BEB . . . C 2 15.341 21.199 5.962 1 11.68 ? C10 BEB 501 B 1 
HETATM 27 O O11 BEB . . . C 2 14.354 20.516 6.211 1 13.94 ? O11 BEB 501 B 1 
HETATM 28 N N12 BEB . . . C 2 16.505 20.701 5.579 1 8.15 ? N12 BEB 501 B 1 
HETATM 29 C C51 BEB . . . C 2 16.87 19.3 5.359 1 8.36 ? C51 BEB 501 B 1 
HETATM 30 C C52 BEB . . . C 2 16.755 18.92 3.883 1 7.57 ? C52 BEB 501 B 1 
HETATM 31 C C57 BEB . . . C 2 17.677 17.91 3.529 1 8.94 ? C57 BEB 501 B 1 
HETATM 32 C C53 BEB . . . C 2 15.875 19.446 2.893 1 7.38 ? C53 BEB 501 B 1 
HETATM 33 C C54 BEB . . . C 2 15.938 18.945 1.561 1 6.52 ? C54 BEB 501 B 1 
HETATM 34 C C55 BEB . . . C 2 16.875 17.924 1.227 1 9.33 ? C55 BEB 501 B 1 
HETATM 35 C C59 BEB . . . C 2 18.283 18.748 5.673 1 7.49 ? C59 BEB 501 B 1 
HETATM 36 O O60 BEB . . . C 2 19.229 19.799 5.376 1 8.5 ? O60 BEB 501 B 1 
HETATM 37 C C56 BEB . . . C 2 17.758 17.395 2.212 1 11.87 ? C56 BEB 501 B 1 
HETATM 38 C C58 BEB . . . C 2 18.498 17.518 4.745 1 6.65 ? C58 BEB 501 B 1 
HETATM 39 C C41 BEB . . . C 2 9.029 26.067 6.135 1 11.32 ? C41 BEB 501 B 1 
HETATM 40 C C42 BEB . . . C 2 9.299 26.762 7.477 1 10.14 ? C42 BEB 501 B 1 
HETATM 41 C C47 BEB . . . C 2 8.196 27.563 7.878 1 10.3 ? C47 BEB 501 B 1 
HETATM 42 C C43 BEB . . . C 2 10.456 26.702 8.306 1 10.99 ? C43 BEB 501 B 1 
HETATM 43 C C44 BEB . . . C 2 10.493 27.446 9.526 1 11.21 ? C44 BEB 501 B 1 
HETATM 44 C C45 BEB . . . C 2 9.379 28.245 9.918 1 8.69 ? C45 BEB 501 B 1 
HETATM 45 C C49 BEB . . . C 2 7.905 26.992 5.596 1 9.44 ? C49 BEB 501 B 1 
HETATM 46 O O50 BEB . . . C 2 8.542 28.11 4.926 1 12.16 ? O50 BEB 501 B 1 
HETATM 47 C C46 BEB . . . C 2 8.207 28.313 9.09 1 8.29 ? C46 BEB 501 B 1 
HETATM 48 C C48 BEB . . . C 2 7.094 27.469 6.839 1 10.02 ? C48 BEB 501 B 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#