data_1EC1 # _model_server_result.job_id Yr8cjE32aQMfD3t-WSld_Q _model_server_result.datetime_utc '2025-02-27 02:46:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ec1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1EC1 # _exptl.entry_id 1EC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 778.977 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-[2,5-O-[DI-4-THIOPHEN-3-YL-BENZYL]-GLUCARYL]-DI-[VALYL-AMIDO-METHANE] _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EC1 _cell.length_a 58.12 _cell.length_b 86.11 _cell.length_c 46.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H50 N4 O8 S2' _chem_comp.formula_weight 778.977 _chem_comp.id BEE _chem_comp.mon_nstd_flag . _chem_comp.name N,N-[2,5-O-[DI-4-THIOPHEN-3-YL-BENZYL]-GLUCARYL]-DI-[VALYL-AMIDO-METHANE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INHIBITOR BEA409' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEE doub 70 n y C1 C6 BEE sing 71 n y C1 C31 BEE sing 72 n n C2 C3 BEE sing 73 n y C2 H2 BEE sing 74 n n C3 C4 BEE doub 75 n y C3 H3 BEE sing 76 n n C4 C5 BEE sing 77 n y C4 C48 BEE sing 78 n y C5 C6 BEE doub 79 n y C5 H5 BEE sing 80 n n C6 H6 BEE sing 81 n n C7 C8 BEE doub 82 n y C7 C12 BEE sing 83 n y C7 C13 BEE sing 84 n n C8 C9 BEE sing 85 n y C8 H8 BEE sing 86 n n C9 C10 BEE doub 87 n y C9 H9 BEE sing 88 n n C10 C11 BEE sing 89 n y C10 C52 BEE sing 90 n y C11 C12 BEE doub 91 n y C11 H11 BEE sing 92 n n C12 H12 BEE sing 93 n n C13 O14 BEE sing 94 n n C13 H131 BEE sing 95 n n C13 H132 BEE sing 96 n n O14 C15 BEE sing 97 n n C15 C16 BEE sing 98 n n C15 C34 BEE sing 99 n n C15 H15 BEE sing 100 n n C16 C17 BEE sing 101 n n C16 O33 BEE sing 102 n n C16 H16 BEE sing 103 n n C17 C18 BEE sing 104 n n C17 O32 BEE sing 105 n n C17 H17 BEE sing 106 n n C18 C19 BEE sing 107 n n C18 O30 BEE sing 108 n n C18 H18 BEE sing 109 n n C19 O20 BEE doub 110 n n C19 N21 BEE sing 111 n n N21 C22 BEE sing 112 n n N21 H21 BEE sing 113 n n C22 C23 BEE sing 114 n n C22 C26 BEE sing 115 n n C22 H22 BEE sing 116 n n C23 C24 BEE sing 117 n n C23 C25 BEE sing 118 n n C23 H23 BEE sing 119 n n C24 H241 BEE sing 120 n n C24 H242 BEE sing 121 n n C24 H243 BEE sing 122 n n C25 H251 BEE sing 123 n n C25 H252 BEE sing 124 n n C25 H253 BEE sing 125 n n C26 O27 BEE doub 126 n n C26 N28 BEE sing 127 n n N28 C29 BEE sing 128 n n N28 H28 BEE sing 129 n n C29 H291 BEE sing 130 n n C29 H292 BEE sing 131 n n C29 H293 BEE sing 132 n n O30 C31 BEE sing 133 n n C31 H311 BEE sing 134 n n C31 H312 BEE sing 135 n n O32 H32 BEE sing 136 n n O33 H33 BEE sing 137 n n C34 O35 BEE doub 138 n n C34 N36 BEE sing 139 n n N36 C37 BEE sing 140 n n N36 H36 BEE sing 141 n n C37 C38 BEE sing 142 n n C37 C41 BEE sing 143 n n C37 H37 BEE sing 144 n n C38 C39 BEE sing 145 n n C38 C40 BEE sing 146 n n C38 H38 BEE sing 147 n n C39 H391 BEE sing 148 n n C39 H392 BEE sing 149 n n C39 H393 BEE sing 150 n n C40 H401 BEE sing 151 n n C40 H402 BEE sing 152 n n C40 H403 BEE sing 153 n n C41 O42 BEE doub 154 n n C41 N43 BEE sing 155 n n N43 C44 BEE sing 156 n n N43 H43 BEE sing 157 n n C44 H441 BEE sing 158 n n C44 H442 BEE sing 159 n n C44 H443 BEE sing 160 n n S45 C46 BEE sing 161 n y S45 C49 BEE sing 162 n y C46 C47 BEE doub 163 n y C46 H46 BEE sing 164 n n C47 C48 BEE sing 165 n y C47 H47 BEE sing 166 n n C48 C49 BEE doub 167 n y C49 H49 BEE sing 168 n n S50 C51 BEE sing 169 n y S50 C54 BEE sing 170 n y C51 C52 BEE doub 171 n y C51 H51 BEE sing 172 n n C52 C53 BEE sing 173 n y C53 C54 BEE doub 174 n y C53 H53 BEE sing 175 n n C54 H54 BEE sing 176 n n # _atom_sites.entry_id 1EC1 _atom_sites.fract_transf_matrix[1][1] 0.017206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEE A 1 501 501 BEE BEE . D 3 HOH A 1 601 601 HOH HOH . D 3 HOH A 2 603 603 HOH HOH . D 3 HOH A 3 605 605 HOH HOH . D 3 HOH A 4 608 608 HOH HOH . D 3 HOH A 5 611 611 HOH HOH . D 3 HOH A 6 612 612 HOH HOH . D 3 HOH A 7 613 613 HOH HOH . D 3 HOH A 8 614 614 HOH HOH . D 3 HOH A 9 616 616 HOH HOH . D 3 HOH A 10 618 618 HOH HOH . D 3 HOH A 11 619 619 HOH HOH . D 3 HOH A 12 622 622 HOH HOH . D 3 HOH A 13 623 623 HOH HOH . D 3 HOH A 14 625 625 HOH HOH . D 3 HOH A 15 626 626 HOH HOH . D 3 HOH A 16 627 627 HOH HOH . D 3 HOH A 17 628 628 HOH HOH . D 3 HOH A 18 629 629 HOH HOH . D 3 HOH A 19 634 634 HOH HOH . D 3 HOH A 20 637 637 HOH HOH . D 3 HOH A 21 638 638 HOH HOH . D 3 HOH A 22 642 642 HOH HOH . D 3 HOH A 23 644 644 HOH HOH . D 3 HOH A 24 645 645 HOH HOH . D 3 HOH A 25 647 647 HOH HOH . D 3 HOH A 26 651 651 HOH HOH . D 3 HOH A 27 653 653 HOH HOH . D 3 HOH A 28 655 655 HOH HOH . D 3 HOH A 29 657 657 HOH HOH . D 3 HOH A 30 658 658 HOH HOH . D 3 HOH A 31 662 662 HOH HOH . D 3 HOH A 32 664 664 HOH HOH . D 3 HOH A 33 666 666 HOH HOH . D 3 HOH A 34 667 667 HOH HOH . D 3 HOH A 35 668 668 HOH HOH . D 3 HOH A 36 678 678 HOH HOH . D 3 HOH A 37 680 680 HOH HOH . D 3 HOH A 38 681 681 HOH HOH . D 3 HOH A 39 682 682 HOH HOH . D 3 HOH A 40 684 684 HOH HOH . D 3 HOH A 41 686 686 HOH HOH . D 3 HOH A 42 688 688 HOH HOH . D 3 HOH A 43 690 690 HOH HOH . D 3 HOH A 44 693 693 HOH HOH . D 3 HOH A 45 695 695 HOH HOH . D 3 HOH A 46 697 697 HOH HOH . D 3 HOH A 47 698 698 HOH HOH . D 3 HOH A 48 699 699 HOH HOH . D 3 HOH A 49 700 700 HOH HOH . D 3 HOH A 50 702 702 HOH HOH . D 3 HOH A 51 703 703 HOH HOH . D 3 HOH A 52 710 710 HOH HOH . D 3 HOH A 53 711 711 HOH HOH . D 3 HOH A 54 712 712 HOH HOH . E 3 HOH B 1 602 602 HOH HOH . E 3 HOH B 2 604 604 HOH HOH . E 3 HOH B 3 606 606 HOH HOH . E 3 HOH B 4 607 607 HOH HOH . E 3 HOH B 5 609 609 HOH HOH . E 3 HOH B 6 610 610 HOH HOH . E 3 HOH B 7 615 615 HOH HOH . E 3 HOH B 8 617 617 HOH HOH . E 3 HOH B 9 620 620 HOH HOH . E 3 HOH B 10 621 621 HOH HOH . E 3 HOH B 11 624 624 HOH HOH . E 3 HOH B 12 630 630 HOH HOH . E 3 HOH B 13 631 631 HOH HOH . E 3 HOH B 14 632 632 HOH HOH . E 3 HOH B 15 633 633 HOH HOH . E 3 HOH B 16 635 635 HOH HOH . E 3 HOH B 17 636 636 HOH HOH . E 3 HOH B 18 639 639 HOH HOH . E 3 HOH B 19 640 640 HOH HOH . E 3 HOH B 20 641 641 HOH HOH . E 3 HOH B 21 643 643 HOH HOH . E 3 HOH B 22 646 646 HOH HOH . E 3 HOH B 23 648 648 HOH HOH . E 3 HOH B 24 649 649 HOH HOH . E 3 HOH B 25 650 650 HOH HOH . E 3 HOH B 26 652 652 HOH HOH . E 3 HOH B 27 654 654 HOH HOH . E 3 HOH B 28 656 656 HOH HOH . E 3 HOH B 29 659 659 HOH HOH . E 3 HOH B 30 660 660 HOH HOH . E 3 HOH B 31 661 661 HOH HOH . E 3 HOH B 32 663 663 HOH HOH . E 3 HOH B 33 665 665 HOH HOH . E 3 HOH B 34 669 669 HOH HOH . E 3 HOH B 35 670 670 HOH HOH . E 3 HOH B 36 671 671 HOH HOH . E 3 HOH B 37 672 672 HOH HOH . E 3 HOH B 38 673 673 HOH HOH . E 3 HOH B 39 674 674 HOH HOH . E 3 HOH B 40 675 675 HOH HOH . E 3 HOH B 41 676 676 HOH HOH . E 3 HOH B 42 677 677 HOH HOH . E 3 HOH B 43 679 679 HOH HOH . E 3 HOH B 44 683 683 HOH HOH . E 3 HOH B 45 685 685 HOH HOH . E 3 HOH B 46 687 687 HOH HOH . E 3 HOH B 47 689 689 HOH HOH . E 3 HOH B 48 691 691 HOH HOH . E 3 HOH B 49 692 692 HOH HOH . E 3 HOH B 50 694 694 HOH HOH . E 3 HOH B 51 696 696 HOH HOH . E 3 HOH B 52 701 701 HOH HOH . E 3 HOH B 53 704 704 HOH HOH . E 3 HOH B 54 705 705 HOH HOH . E 3 HOH B 55 706 706 HOH HOH . E 3 HOH B 56 707 707 HOH HOH . E 3 HOH B 57 708 708 HOH HOH . E 3 HOH B 58 709 709 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEE . . . C 2 9.699 24.197 2.021 1 16.97 ? C1 BEE 501 A 1 HETATM 2 C C2 BEE . . . C 2 8.875 25.328 1.778 1 17.18 ? C2 BEE 501 A 1 HETATM 3 C C3 BEE . . . C 2 7.487 25.268 2.045 1 18.54 ? C3 BEE 501 A 1 HETATM 4 C C4 BEE . . . C 2 6.924 24.07 2.561 1 19.73 ? C4 BEE 501 A 1 HETATM 5 C C5 BEE . . . C 2 7.745 22.949 2.802 1 18.6 ? C5 BEE 501 A 1 HETATM 6 C C6 BEE . . . C 2 9.132 23.013 2.531 1 17.48 ? C6 BEE 501 A 1 HETATM 7 C C7 BEE . . . C 2 16.129 22.256 8.486 1 16.22 ? C7 BEE 501 A 1 HETATM 8 C C8 BEE . . . C 2 15.288 21.382 9.256 1 16.98 ? C8 BEE 501 A 1 HETATM 9 C C9 BEE . . . C 2 15.83 20.219 9.878 1 18.61 ? C9 BEE 501 A 1 HETATM 10 C C10 BEE . . . C 2 17.207 19.941 9.723 1 19.53 ? C10 BEE 501 A 1 HETATM 11 C C11 BEE . . . C 2 18.05 20.817 8.95 1 17.97 ? C11 BEE 501 A 1 HETATM 12 C C12 BEE . . . C 2 17.507 21.976 8.33 1 16.47 ? C12 BEE 501 A 1 HETATM 13 C C13 BEE . . . C 2 15.536 23.468 7.828 1 15.45 ? C13 BEE 501 A 1 HETATM 14 O O14 BEE . . . C 2 14.483 23.079 6.889 1 14.63 ? O14 BEE 501 A 1 HETATM 15 C C15 BEE . . . C 2 14.975 22.631 5.602 1 13.77 ? C15 BEE 501 A 1 HETATM 16 C C16 BEE . . . C 2 13.966 23.037 4.534 1 13.79 ? C16 BEE 501 A 1 HETATM 17 C C17 BEE . . . C 2 13.609 24.489 4.621 1 13.67 ? C17 BEE 501 A 1 HETATM 18 C C18 BEE . . . C 2 12.244 24.775 3.933 1 14.19 ? C18 BEE 501 A 1 HETATM 19 C C19 BEE . . . C 2 11.113 24.739 4.947 1 13.87 ? C19 BEE 501 A 1 HETATM 20 O O20 BEE . . . C 2 10.858 23.67 5.505 1 14.2 ? O20 BEE 501 A 1 HETATM 21 N N21 BEE . . . C 2 10.445 25.87 5.186 1 12.84 ? N21 BEE 501 A 1 HETATM 22 C C22 BEE . . . C 2 9.313 26.008 6.147 1 12.43 ? C22 BEE 501 A 1 HETATM 23 C C23 BEE . . . C 2 9.795 26.662 7.507 1 13.1 ? C23 BEE 501 A 1 HETATM 24 C C24 BEE . . . C 2 8.622 26.845 8.539 1 13.75 ? C24 BEE 501 A 1 HETATM 25 C C25 BEE . . . C 2 10.929 25.867 8.217 1 13.56 ? C25 BEE 501 A 1 HETATM 26 C C26 BEE . . . C 2 8.328 26.939 5.471 1 12.45 ? C26 BEE 501 A 1 HETATM 27 O O27 BEE . . . C 2 8.755 27.979 4.911 1 11.33 ? O27 BEE 501 A 1 HETATM 28 N N28 BEE . . . C 2 7.006 26.555 5.529 1 12.05 ? N28 BEE 501 A 1 HETATM 29 C C29 BEE . . . C 2 6.029 27.413 4.902 1 13.23 ? C29 BEE 501 A 1 HETATM 30 O O30 BEE . . . C 2 11.983 23.776 2.875 1 14.83 ? O30 BEE 501 A 1 HETATM 31 C C31 BEE . . . C 2 11.174 24.264 1.744 1 15.79 ? C31 BEE 501 A 1 HETATM 32 O O32 BEE . . . C 2 14.73 25.209 4.068 1 13.27 ? O32 BEE 501 A 1 HETATM 33 O O33 BEE . . . C 2 14.492 22.689 3.206 1 12.46 ? O33 BEE 501 A 1 HETATM 34 C C34 BEE . . . C 2 15.186 21.177 5.498 1 13.69 ? C34 BEE 501 A 1 HETATM 35 O O35 BEE . . . C 2 14.26 20.433 5.825 1 13.81 ? O35 BEE 501 A 1 HETATM 36 N N36 BEE . . . C 2 16.378 20.755 5.039 1 12.98 ? N36 BEE 501 A 1 HETATM 37 C C37 BEE . . . C 2 16.707 19.361 4.875 1 12.35 ? C37 BEE 501 A 1 HETATM 38 C C38 BEE . . . C 2 16.742 18.989 3.339 1 12.63 ? C38 BEE 501 A 1 HETATM 39 C C39 BEE . . . C 2 15.353 19.199 2.609 1 12.54 ? C39 BEE 501 A 1 HETATM 40 C C40 BEE . . . C 2 17.232 17.522 3.097 1 13.39 ? C40 BEE 501 A 1 HETATM 41 C C41 BEE . . . C 2 18.085 19.201 5.463 1 11.71 ? C41 BEE 501 A 1 HETATM 42 O O42 BEE . . . C 2 19.031 19.939 5.059 1 11.19 ? O42 BEE 501 A 1 HETATM 43 N N43 BEE . . . C 2 18.192 18.238 6.398 1 11.8 ? N43 BEE 501 A 1 HETATM 44 C C44 BEE . . . C 2 19.514 18.036 6.99 1 11.43 ? C44 BEE 501 A 1 HETATM 45 S S45 BEE . . . C 2 2.832 24.222 2.669 1 26.58 ? S45 BEE 501 A 1 HETATM 46 C C46 BEE . . . C 2 3.532 23.399 4.083 1 22.88 ? C46 BEE 501 A 1 HETATM 47 C C47 BEE . . . C 2 4.862 23.349 4.053 1 22.74 ? C47 BEE 501 A 1 HETATM 48 C C48 BEE . . . C 2 5.429 23.989 2.853 1 21.67 ? C48 BEE 501 A 1 HETATM 49 C C49 BEE . . . C 2 4.478 24.483 2.053 1 22.77 ? C49 BEE 501 A 1 HETATM 50 S S50 BEE . . . C 2 19.438 17.092 11.613 1 27.26 ? S50 BEE 501 A 1 HETATM 51 C C51 BEE . . . C 2 19.034 18.661 10.897 1 23.61 ? C51 BEE 501 A 1 HETATM 52 C C52 BEE . . . C 2 17.8 18.71 10.387 1 22.22 ? C52 BEE 501 A 1 HETATM 53 C C53 BEE . . . C 2 17.08 17.433 10.55 1 23.37 ? C53 BEE 501 A 1 HETATM 54 C C54 BEE . . . C 2 17.814 16.511 11.169 1 23.98 ? C54 BEE 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 424 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #