data_1EC2 # _model_server_result.job_id Zi6WTP2suwI0X7mwxzG-2A _model_server_result.datetime_utc '2024-12-26 18:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ec2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1EC2 # _exptl.entry_id 1EC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 768.898 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-[2,5-O-[DI-4-PYRIDIN-3-YL-BENZYL]-GLUCARYL]-DI-[VALYL-AMIDO-METHANE] _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EC2 _cell.length_a 58.48 _cell.length_b 86.67 _cell.length_c 46.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C42 H52 N6 O8' _chem_comp.formula_weight 768.898 _chem_comp.id BEJ _chem_comp.mon_nstd_flag . _chem_comp.name N,N-[2,5-O-[DI-4-PYRIDIN-3-YL-BENZYL]-GLUCARYL]-DI-[VALYL-AMIDO-METHANE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INHIBITOR BEA428' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 BEJ doub 70 n y C01 C06 BEJ sing 71 n y C01 C31 BEJ sing 72 n n C02 C03 BEJ sing 73 n y C02 H2 BEJ sing 74 n n C03 C04 BEJ doub 75 n y C03 H3 BEJ sing 76 n n C04 C05 BEJ sing 77 n y C04 C45 BEJ sing 78 n y C05 C06 BEJ doub 79 n y C05 H5 BEJ sing 80 n n C06 H6 BEJ sing 81 n n C07 C08 BEJ doub 82 n y C07 C12 BEJ sing 83 n y C07 C13 BEJ sing 84 n n C08 C09 BEJ sing 85 n y C08 H8 BEJ sing 86 n n C09 C10 BEJ doub 87 n y C09 H9 BEJ sing 88 n n C10 C11 BEJ sing 89 n y C10 C51 BEJ sing 90 n y C11 C12 BEJ doub 91 n y C11 H11 BEJ sing 92 n n C12 H12 BEJ sing 93 n n C13 O14 BEJ sing 94 n n C13 H131 BEJ sing 95 n n C13 H132 BEJ sing 96 n n O14 C15 BEJ sing 97 n n C15 C16 BEJ sing 98 n n C15 C34 BEJ sing 99 n n C15 H15 BEJ sing 100 n n C16 C17 BEJ sing 101 n n C16 O33 BEJ sing 102 n n C16 H16 BEJ sing 103 n n C17 C18 BEJ sing 104 n n C17 O32 BEJ sing 105 n n C17 H17 BEJ sing 106 n n C18 C19 BEJ sing 107 n n C18 O30 BEJ sing 108 n n C18 H18 BEJ sing 109 n n C19 O20 BEJ doub 110 n n C19 N21 BEJ sing 111 n n N21 C22 BEJ sing 112 n n N21 H21 BEJ sing 113 n n C22 C23 BEJ sing 114 n n C22 C26 BEJ sing 115 n n C22 H22 BEJ sing 116 n n C23 C24 BEJ sing 117 n n C23 C25 BEJ sing 118 n n C23 H23 BEJ sing 119 n n C24 H241 BEJ sing 120 n n C24 H242 BEJ sing 121 n n C24 H243 BEJ sing 122 n n C25 H251 BEJ sing 123 n n C25 H252 BEJ sing 124 n n C25 H253 BEJ sing 125 n n C26 O27 BEJ doub 126 n n C26 N28 BEJ sing 127 n n N28 C29 BEJ sing 128 n n N28 H28 BEJ sing 129 n n C29 H291 BEJ sing 130 n n C29 H292 BEJ sing 131 n n C29 H293 BEJ sing 132 n n O30 C31 BEJ sing 133 n n C31 H311 BEJ sing 134 n n C31 H312 BEJ sing 135 n n O32 H32 BEJ sing 136 n n O33 H33 BEJ sing 137 n n C34 O35 BEJ doub 138 n n C34 N36 BEJ sing 139 n n N36 C37 BEJ sing 140 n n N36 H36 BEJ sing 141 n n C37 C38 BEJ sing 142 n n C37 C41 BEJ sing 143 n n C37 H37 BEJ sing 144 n n C38 C39 BEJ sing 145 n n C38 C40 BEJ sing 146 n n C38 H38 BEJ sing 147 n n C39 H391 BEJ sing 148 n n C39 H392 BEJ sing 149 n n C39 H393 BEJ sing 150 n n C40 H401 BEJ sing 151 n n C40 H402 BEJ sing 152 n n C40 H403 BEJ sing 153 n n C41 O42 BEJ doub 154 n n C41 N43 BEJ sing 155 n n N43 C44 BEJ sing 156 n n N43 H43 BEJ sing 157 n n C44 H441 BEJ sing 158 n n C44 H442 BEJ sing 159 n n C44 H443 BEJ sing 160 n n C45 C46 BEJ doub 161 n y C45 C50 BEJ sing 162 n y C46 C47 BEJ sing 163 n y C46 H46 BEJ sing 164 n n C47 C48 BEJ doub 165 n y C47 H47 BEJ sing 166 n n C48 N49 BEJ sing 167 n y C48 H48 BEJ sing 168 n n N49 C50 BEJ doub 169 n y C50 H50 BEJ sing 170 n n C51 C52 BEJ doub 171 n y C51 C56 BEJ sing 172 n y C52 C53 BEJ sing 173 n y C52 H52 BEJ sing 174 n n C53 C54 BEJ doub 175 n y C53 H53 BEJ sing 176 n n C54 N55 BEJ sing 177 n y C54 H54 BEJ sing 178 n n N55 C56 BEJ doub 179 n y C56 H56 BEJ sing 180 n n # _atom_sites.entry_id 1EC2 _atom_sites.fract_transf_matrix[1][1] 0.0171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEJ B 1 501 501 BEJ BEF . D 3 HOH A 1 601 601 HOH HOH . D 3 HOH A 2 603 603 HOH HOH . D 3 HOH A 3 605 605 HOH HOH . D 3 HOH A 4 606 606 HOH HOH . D 3 HOH A 5 609 609 HOH HOH . D 3 HOH A 6 615 615 HOH HOH . D 3 HOH A 7 616 616 HOH HOH . D 3 HOH A 8 617 617 HOH HOH . D 3 HOH A 9 619 619 HOH HOH . D 3 HOH A 10 620 620 HOH HOH . D 3 HOH A 11 621 621 HOH HOH . D 3 HOH A 12 624 624 HOH HOH . D 3 HOH A 13 625 625 HOH HOH . D 3 HOH A 14 629 629 HOH HOH . D 3 HOH A 15 633 633 HOH HOH . D 3 HOH A 16 636 636 HOH HOH . D 3 HOH A 17 639 639 HOH HOH . D 3 HOH A 18 642 642 HOH HOH . D 3 HOH A 19 643 643 HOH HOH . D 3 HOH A 20 645 645 HOH HOH . D 3 HOH A 21 646 646 HOH HOH . D 3 HOH A 22 649 649 HOH HOH . D 3 HOH A 23 650 650 HOH HOH . D 3 HOH A 24 655 655 HOH HOH . D 3 HOH A 25 657 657 HOH HOH . D 3 HOH A 26 658 658 HOH HOH . D 3 HOH A 27 661 661 HOH HOH . D 3 HOH A 28 663 663 HOH HOH . D 3 HOH A 29 664 664 HOH HOH . D 3 HOH A 30 666 666 HOH HOH . D 3 HOH A 31 667 667 HOH HOH . D 3 HOH A 32 668 668 HOH HOH . D 3 HOH A 33 669 669 HOH HOH . D 3 HOH A 34 670 670 HOH HOH . D 3 HOH A 35 676 676 HOH HOH . D 3 HOH A 36 677 677 HOH HOH . D 3 HOH A 37 681 681 HOH HOH . D 3 HOH A 38 682 682 HOH HOH . D 3 HOH A 39 684 684 HOH HOH . D 3 HOH A 40 689 689 HOH HOH . D 3 HOH A 41 690 690 HOH HOH . D 3 HOH A 42 691 691 HOH HOH . D 3 HOH A 43 694 694 HOH HOH . D 3 HOH A 44 695 695 HOH HOH . E 3 HOH B 1 602 602 HOH HOH . E 3 HOH B 2 604 604 HOH HOH . E 3 HOH B 3 607 607 HOH HOH . E 3 HOH B 4 608 608 HOH HOH . E 3 HOH B 5 610 610 HOH HOH . E 3 HOH B 6 611 611 HOH HOH . E 3 HOH B 7 612 612 HOH HOH . E 3 HOH B 8 613 613 HOH HOH . E 3 HOH B 9 614 614 HOH HOH . E 3 HOH B 10 618 618 HOH HOH . E 3 HOH B 11 622 622 HOH HOH . E 3 HOH B 12 623 623 HOH HOH . E 3 HOH B 13 626 626 HOH HOH . E 3 HOH B 14 627 627 HOH HOH . E 3 HOH B 15 628 628 HOH HOH . E 3 HOH B 16 630 630 HOH HOH . E 3 HOH B 17 631 631 HOH HOH . E 3 HOH B 18 632 632 HOH HOH . E 3 HOH B 19 634 634 HOH HOH . E 3 HOH B 20 635 635 HOH HOH . E 3 HOH B 21 637 637 HOH HOH . E 3 HOH B 22 638 638 HOH HOH . E 3 HOH B 23 640 640 HOH HOH . E 3 HOH B 24 641 641 HOH HOH . E 3 HOH B 25 644 644 HOH HOH . E 3 HOH B 26 647 647 HOH HOH . E 3 HOH B 27 648 648 HOH HOH . E 3 HOH B 28 651 651 HOH HOH . E 3 HOH B 29 652 652 HOH HOH . E 3 HOH B 30 653 653 HOH HOH . E 3 HOH B 31 654 654 HOH HOH . E 3 HOH B 32 656 656 HOH HOH . E 3 HOH B 33 659 659 HOH HOH . E 3 HOH B 34 660 660 HOH HOH . E 3 HOH B 35 662 662 HOH HOH . E 3 HOH B 36 665 665 HOH HOH . E 3 HOH B 37 671 671 HOH HOH . E 3 HOH B 38 672 672 HOH HOH . E 3 HOH B 39 673 673 HOH HOH . E 3 HOH B 40 674 674 HOH HOH . E 3 HOH B 41 675 675 HOH HOH . E 3 HOH B 42 678 678 HOH HOH . E 3 HOH B 43 679 679 HOH HOH . E 3 HOH B 44 680 680 HOH HOH . E 3 HOH B 45 683 683 HOH HOH . E 3 HOH B 46 685 685 HOH HOH . E 3 HOH B 47 686 686 HOH HOH . E 3 HOH B 48 687 687 HOH HOH . E 3 HOH B 49 688 688 HOH HOH . E 3 HOH B 50 692 692 HOH HOH . E 3 HOH B 51 693 693 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BEJ . . . C 2 9.835 24.397 2.085 1 14.38 ? C01 BEJ 501 B 1 HETATM 2 C C02 BEJ . . . C 2 9.04 25.549 1.879 1 14.46 ? C02 BEJ 501 B 1 HETATM 3 C C03 BEJ . . . C 2 7.635 25.501 2.139 1 15.84 ? C03 BEJ 501 B 1 HETATM 4 C C04 BEJ . . . C 2 7.007 24.279 2.615 1 17.18 ? C04 BEJ 501 B 1 HETATM 5 C C05 BEJ . . . C 2 7.851 23.116 2.818 1 15.93 ? C05 BEJ 501 B 1 HETATM 6 C C06 BEJ . . . C 2 9.248 23.157 2.561 1 14.7 ? C06 BEJ 501 B 1 HETATM 7 C C07 BEJ . . . C 2 16.297 22.493 8.554 1 15.14 ? C07 BEJ 501 B 1 HETATM 8 C C08 BEJ . . . C 2 15.453 21.603 9.331 1 15.84 ? C08 BEJ 501 B 1 HETATM 9 C C09 BEJ . . . C 2 16.01 20.427 9.93 1 16.88 ? C09 BEJ 501 B 1 HETATM 10 C C10 BEJ . . . C 2 17.417 20.123 9.761 1 17.93 ? C10 BEJ 501 B 1 HETATM 11 C C11 BEJ . . . C 2 18.251 21.028 8.977 1 17.14 ? C11 BEJ 501 B 1 HETATM 12 C C12 BEJ . . . C 2 17.699 22.211 8.372 1 15.78 ? C12 BEJ 501 B 1 HETATM 13 C C13 BEJ . . . C 2 15.668 23.708 7.925 1 14.87 ? C13 BEJ 501 B 1 HETATM 14 O O14 BEJ . . . C 2 14.601 23.314 7.007 1 12.65 ? O14 BEJ 501 B 1 HETATM 15 C C15 BEJ . . . C 2 15.084 22.86 5.73 1 12.87 ? C15 BEJ 501 B 1 HETATM 16 C C16 BEJ . . . C 2 14.122 23.245 4.616 1 13.14 ? C16 BEJ 501 B 1 HETATM 17 C C17 BEJ . . . C 2 13.715 24.695 4.687 1 13.4 ? C17 BEJ 501 B 1 HETATM 18 C C18 BEJ . . . C 2 12.344 24.926 4.013 1 13.65 ? C18 BEJ 501 B 1 HETATM 19 C C19 BEJ . . . C 2 11.22 24.826 5.065 1 13.41 ? C19 BEJ 501 B 1 HETATM 20 O O20 BEJ . . . C 2 10.983 23.756 5.642 1 13.95 ? O20 BEJ 501 B 1 HETATM 21 N N21 BEJ . . . C 2 10.491 25.992 5.317 1 12.69 ? N21 BEJ 501 B 1 HETATM 22 C C22 BEJ . . . C 2 9.348 26.162 6.285 1 13.04 ? C22 BEJ 501 B 1 HETATM 23 C C23 BEJ . . . C 2 9.818 26.832 7.646 1 13.28 ? C23 BEJ 501 B 1 HETATM 24 C C24 BEJ . . . C 2 10.939 26.046 8.394 1 14.12 ? C24 BEJ 501 B 1 HETATM 25 C C25 BEJ . . . C 2 8.668 27.1 8.658 1 13.34 ? C25 BEJ 501 B 1 HETATM 26 C C26 BEJ . . . C 2 8.603 27.115 5.59 1 13.37 ? C26 BEJ 501 B 1 HETATM 27 O O27 BEJ . . . C 2 8.696 28.142 5.014 1 12.64 ? O27 BEJ 501 B 1 HETATM 28 N N28 BEJ . . . C 2 6.987 26.644 5.553 1 12.73 ? N28 BEJ 501 B 1 HETATM 29 C C29 BEJ . . . C 2 5.954 27.443 4.894 1 13.82 ? C29 BEJ 501 B 1 HETATM 30 O O30 BEJ . . . C 2 12.075 23.973 2.918 1 13.6 ? O30 BEJ 501 B 1 HETATM 31 C C31 BEJ . . . C 2 11.304 24.467 1.816 1 14.41 ? C31 BEJ 501 B 1 HETATM 32 O O32 BEJ . . . C 2 14.834 25.448 4.22 1 12.77 ? O32 BEJ 501 B 1 HETATM 33 O O33 BEJ . . . C 2 14.651 22.914 3.316 1 11.85 ? O33 BEJ 501 B 1 HETATM 34 C C34 BEJ . . . C 2 15.224 21.362 5.654 1 12.15 ? C34 BEJ 501 B 1 HETATM 35 O O35 BEJ . . . C 2 14.294 20.658 6.057 1 12.34 ? O35 BEJ 501 B 1 HETATM 36 N N36 BEJ . . . C 2 16.424 20.899 5.136 1 12.05 ? N36 BEJ 501 B 1 HETATM 37 C C37 BEJ . . . C 2 16.775 19.488 4.981 1 12.05 ? C37 BEJ 501 B 1 HETATM 38 C C38 BEJ . . . C 2 16.816 19.054 3.464 1 13.31 ? C38 BEJ 501 B 1 HETATM 39 C C39 BEJ . . . C 2 17.255 17.564 3.243 1 13.17 ? C39 BEJ 501 B 1 HETATM 40 C C40 BEJ . . . C 2 15.49 19.321 2.741 1 13.05 ? C40 BEJ 501 B 1 HETATM 41 C C41 BEJ . . . C 2 18.192 19.344 5.557 1 11.68 ? C41 BEJ 501 B 1 HETATM 42 O O42 BEJ . . . C 2 19.118 20.083 5.164 1 10.88 ? O42 BEJ 501 B 1 HETATM 43 N N43 BEJ . . . C 2 18.331 18.347 6.516 1 10.92 ? N43 BEJ 501 B 1 HETATM 44 C C44 BEJ . . . C 2 19.624 18.127 7.114 1 11.78 ? C44 BEJ 501 B 1 HETATM 45 C C45 BEJ . . . C 2 5.506 24.209 2.892 1 18.97 ? C45 BEJ 501 B 1 HETATM 46 C C46 BEJ . . . C 2 4.905 23.454 3.965 1 19.95 ? C46 BEJ 501 B 1 HETATM 47 C C47 BEJ . . . C 2 3.473 23.439 4.153 1 20.55 ? C47 BEJ 501 B 1 HETATM 48 C C48 BEJ . . . C 2 2.685 24.205 3.227 1 21.1 ? C48 BEJ 501 B 1 HETATM 49 N N49 BEJ . . . C 2 3.217 24.942 2.185 1 21.12 ? N49 BEJ 501 B 1 HETATM 50 C C50 BEJ . . . C 2 4.577 24.932 2.039 1 19.98 ? C50 BEJ 501 B 1 HETATM 51 C C51 BEJ . . . C 2 18.004 18.883 10.393 1 20.03 ? C51 BEJ 501 B 1 HETATM 52 C C52 BEJ . . . C 2 17.265 17.646 10.56 1 21.11 ? C52 BEJ 501 B 1 HETATM 53 C C53 BEJ . . . C 2 17.875 16.493 11.174 1 22.34 ? C53 BEJ 501 B 1 HETATM 54 C C54 BEJ . . . C 2 19.229 16.634 11.602 1 22.47 ? C54 BEJ 501 B 1 HETATM 55 N N55 BEJ . . . C 2 19.966 17.8 11.457 1 22.83 ? N55 BEJ 501 B 1 HETATM 56 C C56 BEJ . . . C 2 19.362 18.876 10.873 1 21.23 ? C56 BEJ 501 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 56 #