data_1EC5 # _model_server_result.job_id KzXYREhpzVyVS0MZtBnHYw _model_server_result.datetime_utc '2025-04-13 10:23:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ec5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":50}' # _entry.id 1EC5 # _exptl.entry_id 1EC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EC5 _cell.length_a 36.07 _cell.length_b 89.16 _cell.length_c 79.89 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1,2 B,C,E,F,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 39.945 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ASP 2 A ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C GLY 49 A GLY 48 1_555 A N NH2 50 A NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ACE 1 B ACE 0 1_555 B N ASP 2 B ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale4 B C GLY 49 B GLY 48 1_555 B N NH2 50 B NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 C C ACE 1 C ACE 0 1_555 C N ASP 2 C ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 C C GLY 49 C GLY 48 1_555 C N NH2 50 C NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OE1 GLU 11 A GLU 10 1_555 D ZN ZN . A ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc2 A OE2 GLU 11 A GLU 10 1_555 D ZN ZN . A ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc3 A OE1 GLU 37 A GLU 36 1_555 D ZN ZN . A ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 A OE2 GLU 37 A GLU 36 3_555 D ZN ZN . A ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 A ND1 HIS 40 A HIS 39 1_555 D ZN ZN . A ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc6 B OE1 GLU 11 B GLU 10 1_555 E ZN ZN . B ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc7 B OE2 GLU 11 B GLU 10 1_555 E ZN ZN . B ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc8 B OE1 GLU 37 B GLU 36 1_555 E ZN ZN . B ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc9 B OE2 GLU 37 B GLU 36 1_555 F ZN ZN . C ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 B ND1 HIS 40 B HIS 39 1_555 E ZN ZN . B ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc11 E ZN ZN . B ZN 50 1_555 C OE2 GLU 37 C GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc12 C OE1 GLU 11 C GLU 10 1_555 F ZN ZN . C ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc13 C OE2 GLU 11 C GLU 10 1_555 F ZN ZN . C ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc14 C OE1 GLU 37 C GLU 36 1_555 F ZN ZN . C ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc15 C ND1 HIS 40 C HIS 39 1_555 F ZN ZN . C ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1EC5 _atom_sites.fract_transf_matrix[1][1] 0.02772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 50 50 ZN ZN . E 2 ZN B 1 50 50 ZN ZN . F 2 ZN C 1 50 50 ZN ZN . G 3 HOH A 1 51 1 HOH HOH . G 3 HOH A 2 52 2 HOH HOH . G 3 HOH A 3 53 3 HOH HOH . G 3 HOH A 4 54 21 HOH HOH . G 3 HOH A 5 55 22 HOH HOH . G 3 HOH A 6 56 24 HOH HOH . G 3 HOH A 7 57 25 HOH HOH . G 3 HOH A 8 58 26 HOH HOH . G 3 HOH A 9 59 32 HOH HOH . H 3 HOH B 1 51 5 HOH HOH . H 3 HOH B 2 52 6 HOH HOH . H 3 HOH B 3 53 7 HOH HOH . H 3 HOH B 4 54 8 HOH HOH . H 3 HOH B 5 55 9 HOH HOH . H 3 HOH B 6 56 10 HOH HOH . H 3 HOH B 7 57 11 HOH HOH . H 3 HOH B 8 58 13 HOH HOH . H 3 HOH B 9 59 17 HOH HOH . H 3 HOH B 10 60 19 HOH HOH . H 3 HOH B 11 61 23 HOH HOH . H 3 HOH B 12 62 28 HOH HOH . H 3 HOH B 13 63 29 HOH HOH . H 3 HOH B 14 64 31 HOH HOH . I 3 HOH C 1 51 4 HOH HOH . I 3 HOH C 2 52 12 HOH HOH . I 3 HOH C 3 53 14 HOH HOH . I 3 HOH C 4 54 15 HOH HOH . I 3 HOH C 5 55 16 HOH HOH . I 3 HOH C 6 56 18 HOH HOH . I 3 HOH C 7 57 20 HOH HOH . I 3 HOH C 8 58 27 HOH HOH . I 3 HOH C 9 59 30 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.461 _atom_site.Cartn_y 18.02 _atom_site.Cartn_z 21.89 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 50 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #