data_1ECA # _model_server_result.job_id 5ZmnQASkIQ9zu-rkeb6TTA _model_server_result.datetime_utc '2024-12-21 15:53:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":137}' # _entry.id 1ECA # _exptl.entry_id 1ECA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ECA _cell.length_a 54.3 _cell.length_b 54.3 _cell.length_c 35.6 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ECA _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 B FE HEM . A HEM 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 B FE HEM . A HEM 137 1_555 C O HOH . A HOH 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1ECA _atom_sites.fract_transf_matrix[1][1] 0.01842 _atom_sites.fract_transf_matrix[1][2] 0.01063 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 137 1 HEM HEM . C 3 HOH A 1 138 1 HOH HEM . C 3 HOH A 2 139 2 HOH HOH . C 3 HOH A 3 140 3 HOH HOH . C 3 HOH A 4 141 4 HOH HOH . C 3 HOH A 5 142 5 HOH HOH . C 3 HOH A 6 143 6 HOH HOH . C 3 HOH A 7 144 7 HOH HOH . C 3 HOH A 8 145 8 HOH HOH . C 3 HOH A 9 146 9 HOH HOH . C 3 HOH A 10 147 10 HOH HOH . C 3 HOH A 11 148 11 HOH HOH . C 3 HOH A 12 149 12 HOH HOH . C 3 HOH A 13 150 13 HOH HOH . C 3 HOH A 14 151 14 HOH HOH . C 3 HOH A 15 152 15 HOH HOH . C 3 HOH A 16 153 16 HOH HOH . C 3 HOH A 17 154 17 HOH HOH . C 3 HOH A 18 155 18 HOH HOH . C 3 HOH A 19 156 19 HOH HOH . C 3 HOH A 20 157 20 HOH HOH . C 3 HOH A 21 158 21 HOH HOH . C 3 HOH A 22 159 22 HOH HOH . C 3 HOH A 23 160 23 HOH HOH . C 3 HOH A 24 161 24 HOH HOH . C 3 HOH A 25 162 25 HOH HOH . C 3 HOH A 26 163 26 HOH HOH . C 3 HOH A 27 164 27 HOH HOH . C 3 HOH A 28 165 28 HOH HOH . C 3 HOH A 29 166 29 HOH HOH . C 3 HOH A 30 167 30 HOH HOH . C 3 HOH A 31 168 31 HOH HOH . C 3 HOH A 32 169 32 HOH HOH . C 3 HOH A 33 170 33 HOH HOH . C 3 HOH A 34 171 34 HOH HOH . C 3 HOH A 35 172 35 HOH HOH . C 3 HOH A 36 173 36 HOH HOH . C 3 HOH A 37 174 37 HOH HOH . C 3 HOH A 38 175 38 HOH HOH . C 3 HOH A 39 176 39 HOH HOH . C 3 HOH A 40 177 40 HOH HOH . C 3 HOH A 41 178 41 HOH HOH . C 3 HOH A 42 179 42 HOH HOH . C 3 HOH A 43 180 43 HOH HOH . C 3 HOH A 44 181 44 HOH HOH . C 3 HOH A 45 182 45 HOH HOH . C 3 HOH A 46 183 46 HOH HOH . C 3 HOH A 47 184 47 HOH HOH . C 3 HOH A 48 185 48 HOH HOH . C 3 HOH A 49 186 49 HOH HOH . C 3 HOH A 50 187 50 HOH HOH . C 3 HOH A 51 188 51 HOH HOH . C 3 HOH A 52 189 52 HOH HOH . C 3 HOH A 53 190 53 HOH HOH . C 3 HOH A 54 191 54 HOH HOH . C 3 HOH A 55 192 55 HOH HOH . C 3 HOH A 56 193 56 HOH HOH . C 3 HOH A 57 194 57 HOH HOH . C 3 HOH A 58 195 58 HOH HOH . C 3 HOH A 59 196 59 HOH HOH . C 3 HOH A 60 197 60 HOH HOH . C 3 HOH A 61 198 61 HOH HOH . C 3 HOH A 62 199 62 HOH HOH . C 3 HOH A 63 200 63 HOH HOH . C 3 HOH A 64 201 64 HOH HOH . C 3 HOH A 65 202 65 HOH HOH . C 3 HOH A 66 203 66 HOH HOH . C 3 HOH A 67 204 67 HOH HOH . C 3 HOH A 68 205 68 HOH HOH . C 3 HOH A 69 206 69 HOH HOH . C 3 HOH A 70 207 70 HOH HOH . C 3 HOH A 71 208 71 HOH HOH . C 3 HOH A 72 209 72 HOH HOH . C 3 HOH A 73 210 73 HOH HOH . C 3 HOH A 74 211 74 HOH HOH . C 3 HOH A 75 212 75 HOH HOH . C 3 HOH A 76 213 76 HOH HOH . C 3 HOH A 77 214 77 HOH HOH . C 3 HOH A 78 215 78 HOH HOH . C 3 HOH A 79 216 79 HOH HOH . C 3 HOH A 80 217 80 HOH HOH . C 3 HOH A 81 218 81 HOH HOH . C 3 HOH A 82 219 82 HOH HOH . C 3 HOH A 83 220 83 HOH HOH . C 3 HOH A 84 221 84 HOH HOH . C 3 HOH A 85 222 85 HOH HOH . C 3 HOH A 86 223 86 HOH HOH . C 3 HOH A 87 224 87 HOH HOH . C 3 HOH A 88 225 88 HOH HOH . C 3 HOH A 89 226 89 HOH HOH . C 3 HOH A 90 227 90 HOH HOH . C 3 HOH A 91 228 91 HOH HOH . C 3 HOH A 92 229 92 HOH HOH . C 3 HOH A 93 230 93 HOH HOH . C 3 HOH A 94 231 94 HOH HOH . C 3 HOH A 95 232 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 12.362 15.289 26.348 1 11.39 ? CHA HEM 137 A 1 HETATM 2 C CHB HEM . . . B 2 11.169 19.963 25.919 1 6.65 ? CHB HEM 137 A 1 HETATM 3 C CHC HEM . . . B 2 6.58 18.702 25.103 1 13.38 ? CHC HEM 137 A 1 HETATM 4 C CHD HEM . . . B 2 7.712 14.07 25.911 1 9.43 ? CHD HEM 137 A 1 HETATM 5 C C1A HEM . . . B 2 12.455 16.67 26.212 1 10.38 ? C1A HEM 137 A 1 HETATM 6 C C2A HEM . . . B 2 13.655 17.454 26.461 1 18.85 ? C2A HEM 137 A 1 HETATM 7 C C3A HEM . . . B 2 13.319 18.744 26.37 1 13.26 ? C3A HEM 137 A 1 HETATM 8 C C4A HEM . . . B 2 11.9 18.805 26.061 1 10.92 ? C4A HEM 137 A 1 HETATM 9 C CMA HEM . . . B 2 14.26 19.918 26.558 1 14.34 ? CMA HEM 137 A 1 HETATM 10 C CAA HEM . . . B 2 15.039 16.922 26.769 1 11.02 ? CAA HEM 137 A 1 HETATM 11 C CBA HEM . . . B 2 15.639 16.418 25.495 1 16.87 ? CBA HEM 137 A 1 HETATM 12 C CGA HEM . . . B 2 17.033 15.875 25.807 1 29.05 ? CGA HEM 137 A 1 HETATM 13 O O1A HEM . . . B 2 17.503 15.019 25.159 1 40.81 ? O1A HEM 137 A 1 HETATM 14 O O2A HEM . . . B 2 17.673 16.331 26.738 1 23.56 ? O2A HEM 137 A 1 HETATM 15 C C1B HEM . . . B 2 9.82 20.027 25.651 1 13.78 ? C1B HEM 137 A 1 HETATM 16 C C2B HEM . . . B 2 9.066 21.251 25.427 1 8.81 ? C2B HEM 137 A 1 HETATM 17 C C3B HEM . . . B 2 7.798 20.903 25.201 1 9.54 ? C3B HEM 137 A 1 HETATM 18 C C4B HEM . . . B 2 7.723 19.451 25.278 1 8.83 ? C4B HEM 137 A 1 HETATM 19 C CMB HEM . . . B 2 9.602 22.67 25.443 1 13.55 ? CMB HEM 137 A 1 HETATM 20 C CAB HEM . . . B 2 6.658 21.862 24.919 1 10.41 ? CAB HEM 137 A 1 HETATM 21 C CBB HEM . . . B 2 5.735 21.557 24.011 1 16.19 ? CBB HEM 137 A 1 HETATM 22 C C1C HEM . . . B 2 6.483 17.337 25.274 1 11.44 ? C1C HEM 137 A 1 HETATM 23 C C2C HEM . . . B 2 5.255 16.562 25.175 1 11.11 ? C2C HEM 137 A 1 HETATM 24 C C3C HEM . . . B 2 5.568 15.282 25.398 1 12.13 ? C3C HEM 137 A 1 HETATM 25 C C4C HEM . . . B 2 7 15.22 25.643 1 13.06 ? C4C HEM 137 A 1 HETATM 26 C CMC HEM . . . B 2 3.869 17.092 24.875 1 10.33 ? CMC HEM 137 A 1 HETATM 27 C CAC HEM . . . B 2 4.595 14.121 25.393 1 11.85 ? CAC HEM 137 A 1 HETATM 28 C CBC HEM . . . B 2 4.716 13.142 24.497 0 0 ? CBC HEM 137 A 1 HETATM 29 C C1D HEM . . . B 2 9.073 13.996 26.09 1 10.81 ? C1D HEM 137 A 1 HETATM 30 C C2D HEM . . . B 2 9.819 12.776 26.356 1 13.7 ? C2D HEM 137 A 1 HETATM 31 C C3D HEM . . . B 2 11.104 13.113 26.477 1 16.08 ? C3D HEM 137 A 1 HETATM 32 C C4D HEM . . . B 2 11.199 14.554 26.29 1 9.89 ? C4D HEM 137 A 1 HETATM 33 C CMD HEM . . . B 2 9.259 11.372 26.477 1 10.34 ? CMD HEM 137 A 1 HETATM 34 C CAD HEM . . . B 2 12.243 12.154 26.759 1 10.86 ? CAD HEM 137 A 1 HETATM 35 C CBD HEM . . . B 2 12.315 11.959 28.234 1 11 ? CBD HEM 137 A 1 HETATM 36 C CGD HEM . . . B 2 12.739 13.284 28.865 1 18.73 ? CGD HEM 137 A 1 HETATM 37 O O1D HEM . . . B 2 13.863 13.624 28.847 1 14.51 ? O1D HEM 137 A 1 HETATM 38 O O2D HEM . . . B 2 11.909 14.003 29.396 1 12.81 ? O2D HEM 137 A 1 HETATM 39 N NA HEM . . . B 2 11.392 17.52 25.969 1 12.45 ? NA HEM 137 A 1 HETATM 40 N NB HEM . . . B 2 8.975 18.936 25.554 1 11.27 ? NB HEM 137 A 1 HETATM 41 N NC HEM . . . B 2 7.539 16.492 25.562 1 11.49 ? NC HEM 137 A 1 HETATM 42 N ND HEM . . . B 2 9.941 15.073 26.054 1 9.66 ? ND HEM 137 A 1 HETATM 43 FE FE HEM . . . B 2 9.389 17.037 25.925 1 9.63 ? FE HEM 137 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #