data_1ECB
#
_model_server_result.job_id            VHwS4m1eF0hcbqmyHbjSlA 
_model_server_result.datetime_utc      '2024-10-11 06:24:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ecb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":507}' 
#
_entry.id    1ECB 
#
_exptl.entry_id    1ECB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ECB 
_cell.length_a            95.8 
_cell.length_b            113.2 
_cell.length_c            199.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ECB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA tetrameric 4 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,D,K,L,M,N,O,P,S,T 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 
A,B,E,F,G,H,I,J,Q,R 4 1 
C,D,K,L,M,N,O,P,S,T 4 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 95.8 56.6 99.8 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 366 A ASP 366 1_555 E MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A OD1 ASP 367 A ASP 367 1_555 E MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc3 F O3' 5GP . A 5GP 505 1_555 E MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc4 F O2' 5GP . A 5GP 505 1_555 E MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc5 E MG MG . A MG 507 1_555 Q O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 E MG MG . A MG 507 1_555 Q O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc7 B OD1 ASP 366 B ASP 366 1_555 H MG MG . B MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc8 B OD1 ASP 367 B ASP 367 1_555 H MG MG . B MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc9 I O3' 5GP . B 5GP 505 1_555 H MG MG . B MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc10 I O2' 5GP . B 5GP 505 1_555 H MG MG . B MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc11 H MG MG . B MG 507 1_555 R O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc12 H MG MG . B MG 507 1_555 R O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc13 C OD1 ASP 366 C ASP 366 1_555 K MG MG . C MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc14 C OD2 ASP 367 C ASP 367 1_555 K MG MG . C MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc15 L O3' 5GP . C 5GP 505 1_555 K MG MG . C MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? 
metalc ? metalc16 L O2' 5GP . C 5GP 505 1_555 K MG MG . C MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc17 K MG MG . C MG 507 1_555 S O HOH . C HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc18 K MG MG . C MG 507 1_555 S O HOH . C HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc19 D OD1 ASP 366 D ASP 366 1_555 N MG MG . D MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc20 D OD2 ASP 367 D ASP 367 1_555 N MG MG . D MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc21 D OD1 ASP 367 D ASP 367 1_555 N MG MG . D MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc22 O O3' 5GP . D 5GP 505 1_555 N MG MG . D MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? 
metalc ? metalc23 O O2' 5GP . D 5GP 505 1_555 N MG MG . D MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc24 N MG MG . D MG 507 1_555 T O HOH . D HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc25 N MG MG . D MG 507 1_555 T O HOH . D HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1ECB 
_atom_sites.fract_transf_matrix[1][1]    0.010438 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008834 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00501 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 507 507 MG MG . 
F 3 5GP A 1 505 505 5GP 5GP . 
G 3 5GP A 1 506 506 5GP 5GP . 
H 2 MG B 1 507 507 MG MG . 
I 3 5GP B 1 505 505 5GP 5GP . 
J 3 5GP B 1 506 506 5GP 5GP . 
K 2 MG C 1 507 507 MG MG . 
L 3 5GP C 1 505 505 5GP 5GP . 
M 3 5GP C 1 506 506 5GP 5GP . 
N 2 MG D 1 507 507 MG MG . 
O 3 5GP D 1 505 505 5GP 5GP . 
P 3 5GP D 1 506 506 5GP 5GP . 
Q 4 HOH A 1 508 508 HOH HOH . 
Q 4 HOH A 2 509 509 HOH HOH . 
Q 4 HOH A 3 510 2 HOH HOH . 
Q 4 HOH A 4 511 22 HOH HOH . 
Q 4 HOH A 5 512 27 HOH HOH . 
Q 4 HOH A 6 513 28 HOH HOH . 
Q 4 HOH A 7 514 29 HOH HOH . 
R 4 HOH B 1 508 508 HOH HOH . 
R 4 HOH B 2 509 509 HOH HOH . 
R 4 HOH B 3 510 4 HOH HOH . 
R 4 HOH B 4 511 9 HOH HOH . 
R 4 HOH B 5 512 12 HOH HOH . 
R 4 HOH B 6 513 13 HOH HOH . 
R 4 HOH B 7 514 21 HOH HOH . 
R 4 HOH B 8 515 31 HOH HOH . 
S 4 HOH C 1 508 508 HOH HOH . 
S 4 HOH C 2 509 509 HOH HOH . 
S 4 HOH C 3 510 1 HOH HOH . 
S 4 HOH C 4 511 7 HOH HOH . 
S 4 HOH C 5 512 10 HOH HOH . 
S 4 HOH C 6 513 15 HOH HOH . 
S 4 HOH C 7 514 16 HOH HOH . 
S 4 HOH C 8 515 18 HOH HOH . 
S 4 HOH C 9 516 20 HOH HOH . 
S 4 HOH C 10 517 24 HOH HOH . 
S 4 HOH C 11 518 25 HOH HOH . 
S 4 HOH C 12 519 26 HOH HOH . 
S 4 HOH C 13 520 30 HOH HOH . 
T 4 HOH D 1 508 508 HOH HOH . 
T 4 HOH D 2 509 509 HOH HOH . 
T 4 HOH D 3 510 3 HOH HOH . 
T 4 HOH D 4 511 5 HOH HOH . 
T 4 HOH D 5 512 6 HOH HOH . 
T 4 HOH D 6 513 8 HOH HOH . 
T 4 HOH D 7 514 11 HOH HOH . 
T 4 HOH D 8 515 14 HOH HOH . 
T 4 HOH D 9 516 17 HOH HOH . 
T 4 HOH D 10 517 19 HOH HOH . 
T 4 HOH D 11 518 23 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               23.835 
_atom_site.Cartn_y               40.603 
_atom_site.Cartn_z               80.271 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        54.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           507 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#