data_1ECJ # _model_server_result.job_id 4ohQnjNikaQnDA_bZsvKbQ _model_server_result.datetime_utc '2024-11-29 13:00:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ecj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":505}' # _entry.id 1ECJ # _exptl.entry_id 1ECJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ECJ _cell.length_a 116.8 _cell.length_b 156 _cell.length_c 106.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ECJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1ECJ _atom_sites.fract_transf_matrix[1][1] 0.008562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 505 505 AMP AMP . F 2 AMP C 1 505 505 AMP AMP . G 3 HOH A 1 506 5 HOH HOH . G 3 HOH A 2 507 9 HOH HOH . G 3 HOH A 3 508 11 HOH HOH . G 3 HOH A 4 509 12 HOH HOH . G 3 HOH A 5 510 13 HOH HOH . G 3 HOH A 6 511 16 HOH HOH . G 3 HOH A 7 512 17 HOH HOH . G 3 HOH A 8 513 23 HOH HOH . G 3 HOH A 9 514 24 HOH HOH . G 3 HOH A 10 515 26 HOH HOH . G 3 HOH A 11 516 27 HOH HOH . G 3 HOH A 12 517 29 HOH HOH . G 3 HOH A 13 518 30 HOH HOH . G 3 HOH A 14 519 31 HOH HOH . G 3 HOH A 15 520 32 HOH HOH . G 3 HOH A 16 521 33 HOH HOH . G 3 HOH A 17 522 38 HOH HOH . G 3 HOH A 18 523 39 HOH HOH . G 3 HOH A 19 524 40 HOH HOH . G 3 HOH A 20 525 41 HOH HOH . G 3 HOH A 21 526 43 HOH HOH . G 3 HOH A 22 527 44 HOH HOH . G 3 HOH A 23 528 45 HOH HOH . G 3 HOH A 24 529 46 HOH HOH . G 3 HOH A 25 530 49 HOH HOH . G 3 HOH A 26 531 52 HOH HOH . G 3 HOH A 27 532 54 HOH HOH . G 3 HOH A 28 533 57 HOH HOH . G 3 HOH A 29 534 60 HOH HOH . G 3 HOH A 30 535 67 HOH HOH . G 3 HOH A 31 536 68 HOH HOH . G 3 HOH A 32 537 71 HOH HOH . G 3 HOH A 33 538 80 HOH HOH . G 3 HOH A 34 539 82 HOH HOH . G 3 HOH A 35 540 86 HOH HOH . G 3 HOH A 36 541 90 HOH HOH . G 3 HOH A 37 542 92 HOH HOH . G 3 HOH A 38 543 95 HOH HOH . G 3 HOH A 39 544 103 HOH HOH . G 3 HOH A 40 545 104 HOH HOH . G 3 HOH A 41 546 110 HOH HOH . G 3 HOH A 42 547 114 HOH HOH . G 3 HOH A 43 548 119 HOH HOH . G 3 HOH A 44 549 123 HOH HOH . G 3 HOH A 45 550 130 HOH HOH . G 3 HOH A 46 551 131 HOH HOH . G 3 HOH A 47 552 132 HOH HOH . G 3 HOH A 48 553 135 HOH HOH . G 3 HOH A 49 554 142 HOH HOH . G 3 HOH A 50 555 145 HOH HOH . G 3 HOH A 51 556 148 HOH HOH . G 3 HOH A 52 557 154 HOH HOH . G 3 HOH A 53 558 156 HOH HOH . G 3 HOH A 54 559 166 HOH HOH . G 3 HOH A 55 560 168 HOH HOH . G 3 HOH A 56 561 175 HOH HOH . H 3 HOH B 1 505 18 HOH HOH . H 3 HOH B 2 506 35 HOH HOH . H 3 HOH B 3 507 37 HOH HOH . H 3 HOH B 4 508 48 HOH HOH . H 3 HOH B 5 509 51 HOH HOH . H 3 HOH B 6 510 56 HOH HOH . H 3 HOH B 7 511 61 HOH HOH . H 3 HOH B 8 512 64 HOH HOH . H 3 HOH B 9 513 73 HOH HOH . H 3 HOH B 10 514 83 HOH HOH . H 3 HOH B 11 515 87 HOH HOH . H 3 HOH B 12 516 91 HOH HOH . H 3 HOH B 13 517 96 HOH HOH . H 3 HOH B 14 518 97 HOH HOH . H 3 HOH B 15 519 98 HOH HOH . H 3 HOH B 16 520 105 HOH HOH . H 3 HOH B 17 521 107 HOH HOH . H 3 HOH B 18 522 109 HOH HOH . H 3 HOH B 19 523 112 HOH HOH . H 3 HOH B 20 524 124 HOH HOH . H 3 HOH B 21 525 129 HOH HOH . H 3 HOH B 22 526 138 HOH HOH . H 3 HOH B 23 527 140 HOH HOH . H 3 HOH B 24 528 143 HOH HOH . H 3 HOH B 25 529 144 HOH HOH . H 3 HOH B 26 530 152 HOH HOH . H 3 HOH B 27 531 157 HOH HOH . H 3 HOH B 28 532 158 HOH HOH . H 3 HOH B 29 533 159 HOH HOH . H 3 HOH B 30 534 173 HOH HOH . H 3 HOH B 31 535 174 HOH HOH . H 3 HOH B 32 536 177 HOH HOH . I 3 HOH C 1 506 2 HOH HOH . I 3 HOH C 2 507 3 HOH HOH . I 3 HOH C 3 508 4 HOH HOH . I 3 HOH C 4 509 7 HOH HOH . I 3 HOH C 5 510 8 HOH HOH . I 3 HOH C 6 511 10 HOH HOH . I 3 HOH C 7 512 15 HOH HOH . I 3 HOH C 8 513 19 HOH HOH . I 3 HOH C 9 514 20 HOH HOH . I 3 HOH C 10 515 21 HOH HOH . I 3 HOH C 11 516 28 HOH HOH . I 3 HOH C 12 517 36 HOH HOH . I 3 HOH C 13 518 42 HOH HOH . I 3 HOH C 14 519 50 HOH HOH . I 3 HOH C 15 520 53 HOH HOH . I 3 HOH C 16 521 58 HOH HOH . I 3 HOH C 17 522 59 HOH HOH . I 3 HOH C 18 523 72 HOH HOH . I 3 HOH C 19 524 75 HOH HOH . I 3 HOH C 20 525 76 HOH HOH . I 3 HOH C 21 526 77 HOH HOH . I 3 HOH C 22 527 79 HOH HOH . I 3 HOH C 23 528 81 HOH HOH . I 3 HOH C 24 529 84 HOH HOH . I 3 HOH C 25 530 85 HOH HOH . I 3 HOH C 26 531 88 HOH HOH . I 3 HOH C 27 532 89 HOH HOH . I 3 HOH C 28 533 94 HOH HOH . I 3 HOH C 29 534 100 HOH HOH . I 3 HOH C 30 535 115 HOH HOH . I 3 HOH C 31 536 116 HOH HOH . I 3 HOH C 32 537 117 HOH HOH . I 3 HOH C 33 538 120 HOH HOH . I 3 HOH C 34 539 126 HOH HOH . I 3 HOH C 35 540 128 HOH HOH . I 3 HOH C 36 541 134 HOH HOH . I 3 HOH C 37 542 139 HOH HOH . I 3 HOH C 38 543 146 HOH HOH . I 3 HOH C 39 544 149 HOH HOH . I 3 HOH C 40 545 150 HOH HOH . I 3 HOH C 41 546 151 HOH HOH . I 3 HOH C 42 547 162 HOH HOH . I 3 HOH C 43 548 163 HOH HOH . I 3 HOH C 44 549 165 HOH HOH . I 3 HOH C 45 550 167 HOH HOH . I 3 HOH C 46 551 171 HOH HOH . I 3 HOH C 47 552 172 HOH HOH . I 3 HOH C 48 553 178 HOH HOH . I 3 HOH C 49 554 180 HOH HOH . J 3 HOH D 1 505 1 HOH HOH . J 3 HOH D 2 506 6 HOH HOH . J 3 HOH D 3 507 14 HOH HOH . J 3 HOH D 4 508 22 HOH HOH . J 3 HOH D 5 509 25 HOH HOH . J 3 HOH D 6 510 34 HOH HOH . J 3 HOH D 7 511 47 HOH HOH . J 3 HOH D 8 512 55 HOH HOH . J 3 HOH D 9 513 62 HOH HOH . J 3 HOH D 10 514 63 HOH HOH . J 3 HOH D 11 515 65 HOH HOH . J 3 HOH D 12 516 69 HOH HOH . J 3 HOH D 13 517 70 HOH HOH . J 3 HOH D 14 518 74 HOH HOH . J 3 HOH D 15 519 78 HOH HOH . J 3 HOH D 16 520 93 HOH HOH . J 3 HOH D 17 521 99 HOH HOH . J 3 HOH D 18 522 101 HOH HOH . J 3 HOH D 19 523 102 HOH HOH . J 3 HOH D 20 524 106 HOH HOH . J 3 HOH D 21 525 108 HOH HOH . J 3 HOH D 22 526 111 HOH HOH . J 3 HOH D 23 527 113 HOH HOH . J 3 HOH D 24 528 118 HOH HOH . J 3 HOH D 25 529 121 HOH HOH . J 3 HOH D 26 530 122 HOH HOH . J 3 HOH D 27 531 125 HOH HOH . J 3 HOH D 28 532 127 HOH HOH . J 3 HOH D 29 533 133 HOH HOH . J 3 HOH D 30 534 136 HOH HOH . J 3 HOH D 31 535 137 HOH HOH . J 3 HOH D 32 536 147 HOH HOH . J 3 HOH D 33 537 153 HOH HOH . J 3 HOH D 34 538 155 HOH HOH . J 3 HOH D 35 539 160 HOH HOH . J 3 HOH D 36 540 161 HOH HOH . J 3 HOH D 37 541 164 HOH HOH . J 3 HOH D 38 542 169 HOH HOH . J 3 HOH D 39 543 170 HOH HOH . J 3 HOH D 40 544 176 HOH HOH . J 3 HOH D 41 545 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 2 38.975 46.871 59.062 0.35 32.25 ? P AMP 505 A 1 HETATM 2 O O1P AMP . . . E 2 39.103 45.637 59.761 0.35 36.57 ? O1P AMP 505 A 1 HETATM 3 O O2P AMP . . . E 2 39.136 47.935 60.002 0.35 36.45 ? O2P AMP 505 A 1 HETATM 4 O O3P AMP . . . E 2 37.779 47.007 58.308 0.35 26.25 ? O3P AMP 505 A 1 HETATM 5 O O5' AMP . . . E 2 40.163 47.001 58.106 0.35 30.43 ? O5' AMP 505 A 1 HETATM 6 C C5' AMP . . . E 2 41.549 47.167 58.353 0.35 39.73 ? C5' AMP 505 A 1 HETATM 7 C C4' AMP . . . E 2 42.431 46.334 57.35 0.35 45.54 ? C4' AMP 505 A 1 HETATM 8 O O4' AMP . . . E 2 41.964 46.781 56.097 0.35 50.92 ? O4' AMP 505 A 1 HETATM 9 C C3' AMP . . . E 2 43.969 46.526 57.261 0.35 50.04 ? C3' AMP 505 A 1 HETATM 10 O O3' AMP . . . E 2 44.684 45.295 57.382 0.35 53.89 ? O3' AMP 505 A 1 HETATM 11 C C2' AMP . . . E 2 44.275 47.032 55.858 0.35 52.51 ? C2' AMP 505 A 1 HETATM 12 O O2' AMP . . . E 2 44.851 46.057 54.978 0.35 56.42 ? O2' AMP 505 A 1 HETATM 13 C C1' AMP . . . E 2 42.948 47.334 55.252 0.35 53.01 ? C1' AMP 505 A 1 HETATM 14 N N9 AMP . . . E 2 42.634 48.773 55.074 0.35 55.26 ? N9 AMP 505 A 1 HETATM 15 C C8 AMP . . . E 2 43.086 49.886 55.714 0.35 57.75 ? C8 AMP 505 A 1 HETATM 16 N N7 AMP . . . E 2 42.521 51.001 55.339 0.35 54.19 ? N7 AMP 505 A 1 HETATM 17 C C5 AMP . . . E 2 41.632 50.593 54.387 0.35 57.7 ? C5 AMP 505 A 1 HETATM 18 C C6 AMP . . . E 2 40.706 51.276 53.617 0.35 62.14 ? C6 AMP 505 A 1 HETATM 19 N N6 AMP . . . E 2 40.456 52.57 53.74 0.35 65.58 ? N6 AMP 505 A 1 HETATM 20 N N1 AMP . . . E 2 39.978 50.574 52.757 0.35 64.84 ? N1 AMP 505 A 1 HETATM 21 C C2 AMP . . . E 2 40.158 49.28 52.67 0.35 62.87 ? C2 AMP 505 A 1 HETATM 22 N N3 AMP . . . E 2 40.987 48.53 53.345 0.35 61.1 ? N3 AMP 505 A 1 HETATM 23 C C4 AMP . . . E 2 41.704 49.254 54.207 0.35 57.46 ? C4 AMP 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #