data_1ECM # _model_server_result.job_id Swbk39vtUU8amuEEmChP5A _model_server_result.datetime_utc '2024-11-26 06:41:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ecm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1ECM # _exptl.entry_id 1ECM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.199 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ECM _cell.length_a 80.83 _cell.length_b 80.83 _cell.length_c 83.32 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ECM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_556 x-y,-y,-z+4/3 1 0 0 0 -1 0 0 0 -1 0 0 111.093333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 O6' _chem_comp.formula_weight 228.199 _chem_comp.id TSA _chem_comp.mon_nstd_flag . _chem_comp.name '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TSA sing 293 n n C1 C6 TSA sing 294 n n C1 C9 TSA sing 295 n n C1 C10 TSA sing 296 n n C2 C3 TSA doub 297 n n C2 H2 TSA sing 298 n n C3 C4 TSA sing 299 n n C3 H3 TSA sing 300 n n C4 O5 TSA sing 301 n n C4 C5 TSA sing 302 n n C4 H4 TSA sing 303 n n O5 HO5 TSA sing 304 n n C5 C6 TSA sing 305 n n C5 O7 TSA sing 306 n n C5 H5 TSA sing 307 n n C6 H61 TSA sing 308 n n C6 H62 TSA sing 309 n n O7 C8 TSA sing 310 n n C8 C9 TSA sing 311 n n C8 C11 TSA sing 312 n n C8 H8 TSA sing 313 n n C9 H91 TSA sing 314 n n C9 H92 TSA sing 315 n n C10 O1 TSA doub 316 n n C10 O2 TSA sing 317 n n O2 HO2 TSA sing 318 n n C11 O3 TSA doub 319 n n C11 O4 TSA sing 320 n n O4 HO4 TSA sing 321 n n # _atom_sites.entry_id 1ECM _atom_sites.fract_transf_matrix[1][1] 0.012372 _atom_sites.fract_transf_matrix[1][2] 0.007143 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TSA A 1 500 500 TSA TSA . D 2 TSA B 1 501 501 TSA TSA . E 3 HOH A 1 401 401 HOH HOH . E 3 HOH A 2 402 402 HOH HOH . E 3 HOH A 3 403 403 HOH HOH . E 3 HOH A 4 404 404 HOH HOH . E 3 HOH A 5 406 406 HOH HOH . E 3 HOH A 6 408 408 HOH HOH . E 3 HOH A 7 410 410 HOH HOH . E 3 HOH A 8 413 413 HOH HOH . E 3 HOH A 9 414 414 HOH HOH . E 3 HOH A 10 416 416 HOH HOH . E 3 HOH A 11 417 417 HOH HOH . E 3 HOH A 12 421 421 HOH HOH . E 3 HOH A 13 422 422 HOH HOH . E 3 HOH A 14 425 425 HOH HOH . E 3 HOH A 15 426 426 HOH HOH . E 3 HOH A 16 428 428 HOH HOH . E 3 HOH A 17 431 431 HOH HOH . E 3 HOH A 18 432 432 HOH HOH . E 3 HOH A 19 433 433 HOH HOH . E 3 HOH A 20 436 436 HOH HOH . E 3 HOH A 21 437 437 HOH HOH . E 3 HOH A 22 438 438 HOH HOH . E 3 HOH A 23 439 439 HOH HOH . E 3 HOH A 24 441 441 HOH HOH . E 3 HOH A 25 442 442 HOH HOH . E 3 HOH A 26 449 449 HOH HOH . E 3 HOH A 27 450 450 HOH HOH . E 3 HOH A 28 451 451 HOH HOH . E 3 HOH A 29 453 453 HOH HOH . E 3 HOH A 30 457 457 HOH HOH . E 3 HOH A 31 458 458 HOH HOH . E 3 HOH A 32 459 459 HOH HOH . E 3 HOH A 33 460 460 HOH HOH . E 3 HOH A 34 461 461 HOH HOH . E 3 HOH A 35 463 463 HOH HOH . E 3 HOH A 36 465 465 HOH HOH . E 3 HOH A 37 466 466 HOH HOH . E 3 HOH A 38 467 467 HOH HOH . E 3 HOH A 39 468 468 HOH HOH . E 3 HOH A 40 471 471 HOH HOH . E 3 HOH A 41 472 472 HOH HOH . E 3 HOH A 42 473 473 HOH HOH . F 3 HOH B 1 405 405 HOH HOH . F 3 HOH B 2 409 409 HOH HOH . F 3 HOH B 3 411 411 HOH HOH . F 3 HOH B 4 412 412 HOH HOH . F 3 HOH B 5 415 415 HOH HOH . F 3 HOH B 6 418 418 HOH HOH . F 3 HOH B 7 419 419 HOH HOH . F 3 HOH B 8 420 420 HOH HOH . F 3 HOH B 9 423 423 HOH HOH . F 3 HOH B 10 424 424 HOH HOH . F 3 HOH B 11 427 427 HOH HOH . F 3 HOH B 12 429 429 HOH HOH . F 3 HOH B 13 430 430 HOH HOH . F 3 HOH B 14 434 434 HOH HOH . F 3 HOH B 15 435 435 HOH HOH . F 3 HOH B 16 443 443 HOH HOH . F 3 HOH B 17 444 444 HOH HOH . F 3 HOH B 18 445 445 HOH HOH . F 3 HOH B 19 446 446 HOH HOH . F 3 HOH B 20 447 447 HOH HOH . F 3 HOH B 21 448 448 HOH HOH . F 3 HOH B 22 452 452 HOH HOH . F 3 HOH B 23 454 454 HOH HOH . F 3 HOH B 24 455 455 HOH HOH . F 3 HOH B 25 456 456 HOH HOH . F 3 HOH B 26 462 462 HOH HOH . F 3 HOH B 27 464 464 HOH HOH . F 3 HOH B 28 469 469 HOH HOH . F 3 HOH B 29 470 470 HOH HOH . F 3 HOH B 30 474 474 HOH HOH . F 3 HOH B 31 475 475 HOH HOH . F 3 HOH B 32 476 476 HOH HOH . F 3 HOH B 33 477 477 HOH HOH . F 3 HOH B 34 478 478 HOH HOH . F 3 HOH B 35 479 479 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TSA . . . D 2 27.499 17.712 49.922 1 27.89 ? C1 TSA 501 B 1 HETATM 2 C C2 TSA . . . D 2 27.291 18.473 51.273 1 30.44 ? C2 TSA 501 B 1 HETATM 3 C C3 TSA . . . D 2 26.516 18.006 52.302 1 28.2 ? C3 TSA 501 B 1 HETATM 4 C C4 TSA . . . D 2 25.668 16.741 52.215 1 26.1 ? C4 TSA 501 B 1 HETATM 5 O O5 TSA . . . D 2 24.332 17.134 52.236 1 28.11 ? O5 TSA 501 B 1 HETATM 6 C C5 TSA . . . D 2 25.887 16 50.885 1 28.08 ? C5 TSA 501 B 1 HETATM 7 C C6 TSA . . . D 2 26.161 16.967 49.675 1 26.07 ? C6 TSA 501 B 1 HETATM 8 O O7 TSA . . . D 2 26.983 15.121 50.989 1 29 ? O7 TSA 501 B 1 HETATM 9 C C8 TSA . . . D 2 28.366 15.517 50.926 1 28.01 ? C8 TSA 501 B 1 HETATM 10 C C9 TSA . . . D 2 28.645 16.655 49.896 1 26.77 ? C9 TSA 501 B 1 HETATM 11 C C10 TSA . . . D 2 27.907 18.692 48.796 1 27.53 ? C10 TSA 501 B 1 HETATM 12 O O1 TSA . . . D 2 27.378 18.557 47.682 1 26.24 ? O1 TSA 501 B 1 HETATM 13 O O2 TSA . . . D 2 28.806 19.528 49.004 1 28.36 ? O2 TSA 501 B 1 HETATM 14 C C11 TSA . . . D 2 28.945 15.838 52.336 1 28.38 ? C11 TSA 501 B 1 HETATM 15 O O3 TSA . . . D 2 29.998 16.499 52.405 1 31.21 ? O3 TSA 501 B 1 HETATM 16 O O4 TSA . . . D 2 28.322 15.475 53.352 1 28.82 ? O4 TSA 501 B 1 HETATM 17 H H2 TSA . . . D 2 27.828 19.408 51.363 1 15 ? H2 TSA 501 B 1 HETATM 18 H H3 TSA . . . D 2 26.552 18.48 53.266 1 15 ? H3 TSA 501 B 1 HETATM 19 H H4 TSA . . . D 2 25.844 16.082 53.07 1 15 ? H4 TSA 501 B 1 HETATM 20 H HO5 TSA . . . D 2 24.346 18.081 52.426 1 15 ? HO5 TSA 501 B 1 HETATM 21 H H5 TSA . . . D 2 25.017 15.38 50.687 1 15 ? H5 TSA 501 B 1 HETATM 22 H H61 TSA . . . D 2 26.137 16.463 48.738 1 15 ? H61 TSA 501 B 1 HETATM 23 H H62 TSA . . . D 2 25.359 17.693 49.556 1 15 ? H62 TSA 501 B 1 HETATM 24 H H8 TSA . . . D 2 28.925 14.639 50.639 1 15 ? H8 TSA 501 B 1 HETATM 25 H H91 TSA . . . D 2 29.596 17.13 50.09 1 15 ? H91 TSA 501 B 1 HETATM 26 H H92 TSA . . . D 2 28.806 16.261 48.894 1 15 ? H92 TSA 501 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #