data_1ECX # _model_server_result.job_id Uanose7eKaf4QTjhCkeCdA _model_server_result.datetime_utc '2024-11-22 21:35:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ecx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 1ECX # _exptl.entry_id 1ECX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ECX _cell.length_a 115.41 _cell.length_b 115.41 _cell.length_c 156.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ECX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,C,D,G 2 1 B,E,F,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_655 -x+1,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 115.41 0 52.316667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 1ECX _atom_sites.fract_transf_matrix[1][1] 0.008665 _atom_sites.fract_transf_matrix[1][2] 0.005003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 500 500 PLP PLP . D 3 CYS A 1 502 501 CYS CYS . E 2 PLP B 1 501 500 PLP PLP . F 3 CYS B 1 503 501 CYS CYS . G 4 HOH A 1 503 1 HOH H2O . G 4 HOH A 2 504 13 HOH H2O . G 4 HOH A 3 505 14 HOH H2O . G 4 HOH A 4 506 23 HOH H2O . G 4 HOH A 5 507 26 HOH H2O . G 4 HOH A 6 508 27 HOH H2O . G 4 HOH A 7 509 30 HOH H2O . G 4 HOH A 8 510 31 HOH H2O . G 4 HOH A 9 511 32 HOH H2O . G 4 HOH A 10 512 35 HOH H2O . G 4 HOH A 11 513 36 HOH H2O . G 4 HOH A 12 514 37 HOH H2O . G 4 HOH A 13 515 40 HOH H2O . G 4 HOH A 14 516 42 HOH H2O . G 4 HOH A 15 517 43 HOH H2O . G 4 HOH A 16 518 44 HOH H2O . G 4 HOH A 17 519 45 HOH H2O . G 4 HOH A 18 520 51 HOH H2O . G 4 HOH A 19 521 52 HOH H2O . G 4 HOH A 20 522 54 HOH H2O . G 4 HOH A 21 523 55 HOH H2O . G 4 HOH A 22 524 56 HOH H2O . G 4 HOH A 23 525 58 HOH H2O . G 4 HOH A 24 526 60 HOH H2O . G 4 HOH A 25 527 61 HOH H2O . G 4 HOH A 26 528 62 HOH H2O . G 4 HOH A 27 529 65 HOH H2O . G 4 HOH A 28 530 67 HOH H2O . G 4 HOH A 29 531 70 HOH H2O . G 4 HOH A 30 532 76 HOH H2O . G 4 HOH A 31 533 77 HOH H2O . G 4 HOH A 32 534 78 HOH H2O . G 4 HOH A 33 535 79 HOH H2O . G 4 HOH A 34 536 82 HOH H2O . G 4 HOH A 35 537 83 HOH H2O . G 4 HOH A 36 538 85 HOH H2O . G 4 HOH A 37 539 86 HOH H2O . G 4 HOH A 38 540 89 HOH H2O . G 4 HOH A 39 541 96 HOH H2O . G 4 HOH A 40 542 98 HOH H2O . G 4 HOH A 41 543 100 HOH H2O . G 4 HOH A 42 544 102 HOH H2O . G 4 HOH A 43 545 104 HOH H2O . G 4 HOH A 44 546 110 HOH H2O . G 4 HOH A 45 547 113 HOH H2O . G 4 HOH A 46 548 115 HOH H2O . G 4 HOH A 47 549 117 HOH H2O . G 4 HOH A 48 550 118 HOH H2O . G 4 HOH A 49 551 120 HOH H2O . G 4 HOH A 50 552 124 HOH H2O . G 4 HOH A 51 553 129 HOH H2O . G 4 HOH A 52 554 133 HOH H2O . G 4 HOH A 53 555 134 HOH H2O . G 4 HOH A 54 556 137 HOH H2O . G 4 HOH A 55 557 138 HOH H2O . G 4 HOH A 56 558 139 HOH H2O . G 4 HOH A 57 559 142 HOH H2O . G 4 HOH A 58 560 145 HOH H2O . G 4 HOH A 59 561 146 HOH H2O . G 4 HOH A 60 562 147 HOH H2O . G 4 HOH A 61 563 148 HOH H2O . G 4 HOH A 62 564 149 HOH H2O . G 4 HOH A 63 565 150 HOH H2O . G 4 HOH A 64 566 153 HOH H2O . G 4 HOH A 65 567 154 HOH H2O . G 4 HOH A 66 568 155 HOH H2O . G 4 HOH A 67 569 157 HOH H2O . G 4 HOH A 68 570 162 HOH H2O . G 4 HOH A 69 571 168 HOH H2O . G 4 HOH A 70 572 169 HOH H2O . G 4 HOH A 71 573 170 HOH H2O . G 4 HOH A 72 574 171 HOH H2O . G 4 HOH A 73 575 172 HOH H2O . G 4 HOH A 74 576 174 HOH H2O . G 4 HOH A 75 577 178 HOH H2O . H 4 HOH B 1 504 2 HOH H2O . H 4 HOH B 2 505 3 HOH H2O . H 4 HOH B 3 506 4 HOH H2O . H 4 HOH B 4 507 5 HOH H2O . H 4 HOH B 5 508 6 HOH H2O . H 4 HOH B 6 509 7 HOH H2O . H 4 HOH B 7 510 8 HOH H2O . H 4 HOH B 8 511 9 HOH H2O . H 4 HOH B 9 512 10 HOH H2O . H 4 HOH B 10 513 11 HOH H2O . H 4 HOH B 11 514 12 HOH H2O . H 4 HOH B 12 515 15 HOH H2O . H 4 HOH B 13 516 16 HOH H2O . H 4 HOH B 14 517 17 HOH H2O . H 4 HOH B 15 518 18 HOH H2O . H 4 HOH B 16 519 19 HOH H2O . H 4 HOH B 17 520 20 HOH H2O . H 4 HOH B 18 521 21 HOH H2O . H 4 HOH B 19 522 22 HOH H2O . H 4 HOH B 20 523 24 HOH H2O . H 4 HOH B 21 524 25 HOH H2O . H 4 HOH B 22 525 28 HOH H2O . H 4 HOH B 23 526 29 HOH H2O . H 4 HOH B 24 527 33 HOH H2O . H 4 HOH B 25 528 34 HOH H2O . H 4 HOH B 26 529 38 HOH H2O . H 4 HOH B 27 530 39 HOH H2O . H 4 HOH B 28 531 41 HOH H2O . H 4 HOH B 29 532 46 HOH H2O . H 4 HOH B 30 533 47 HOH H2O . H 4 HOH B 31 534 48 HOH H2O . H 4 HOH B 32 535 49 HOH H2O . H 4 HOH B 33 536 50 HOH H2O . H 4 HOH B 34 537 53 HOH H2O . H 4 HOH B 35 538 57 HOH H2O . H 4 HOH B 36 539 59 HOH H2O . H 4 HOH B 37 540 63 HOH H2O . H 4 HOH B 38 541 64 HOH H2O . H 4 HOH B 39 542 66 HOH H2O . H 4 HOH B 40 543 68 HOH H2O . H 4 HOH B 41 544 69 HOH H2O . H 4 HOH B 42 545 71 HOH H2O . H 4 HOH B 43 546 72 HOH H2O . H 4 HOH B 44 547 73 HOH H2O . H 4 HOH B 45 548 74 HOH H2O . H 4 HOH B 46 549 75 HOH H2O . H 4 HOH B 47 550 80 HOH H2O . H 4 HOH B 48 551 81 HOH H2O . H 4 HOH B 49 552 84 HOH H2O . H 4 HOH B 50 553 87 HOH H2O . H 4 HOH B 51 554 88 HOH H2O . H 4 HOH B 52 555 90 HOH H2O . H 4 HOH B 53 556 91 HOH H2O . H 4 HOH B 54 557 92 HOH H2O . H 4 HOH B 55 558 93 HOH H2O . H 4 HOH B 56 559 94 HOH H2O . H 4 HOH B 57 560 95 HOH H2O . H 4 HOH B 58 561 97 HOH H2O . H 4 HOH B 59 562 99 HOH H2O . H 4 HOH B 60 563 101 HOH H2O . H 4 HOH B 61 564 103 HOH H2O . H 4 HOH B 62 565 105 HOH H2O . H 4 HOH B 63 566 106 HOH H2O . H 4 HOH B 64 567 107 HOH H2O . H 4 HOH B 65 568 108 HOH H2O . H 4 HOH B 66 569 109 HOH H2O . H 4 HOH B 67 570 111 HOH H2O . H 4 HOH B 68 571 112 HOH H2O . H 4 HOH B 69 572 114 HOH H2O . H 4 HOH B 70 573 116 HOH H2O . H 4 HOH B 71 574 119 HOH H2O . H 4 HOH B 72 575 121 HOH H2O . H 4 HOH B 73 576 122 HOH H2O . H 4 HOH B 74 577 123 HOH H2O . H 4 HOH B 75 578 125 HOH H2O . H 4 HOH B 76 579 126 HOH H2O . H 4 HOH B 77 580 127 HOH H2O . H 4 HOH B 78 581 128 HOH H2O . H 4 HOH B 79 582 130 HOH H2O . H 4 HOH B 80 583 131 HOH H2O . H 4 HOH B 81 584 132 HOH H2O . H 4 HOH B 82 585 135 HOH H2O . H 4 HOH B 83 586 136 HOH H2O . H 4 HOH B 84 587 140 HOH H2O . H 4 HOH B 85 588 141 HOH H2O . H 4 HOH B 86 589 143 HOH H2O . H 4 HOH B 87 590 144 HOH H2O . H 4 HOH B 88 591 151 HOH H2O . H 4 HOH B 89 592 152 HOH H2O . H 4 HOH B 90 593 156 HOH H2O . H 4 HOH B 91 594 158 HOH H2O . H 4 HOH B 92 595 159 HOH H2O . H 4 HOH B 93 596 160 HOH H2O . H 4 HOH B 94 597 161 HOH H2O . H 4 HOH B 95 598 163 HOH H2O . H 4 HOH B 96 599 164 HOH H2O . H 4 HOH B 97 600 165 HOH H2O . H 4 HOH B 98 601 166 HOH H2O . H 4 HOH B 99 602 167 HOH H2O . H 4 HOH B 100 603 173 HOH H2O . H 4 HOH B 101 604 175 HOH H2O . H 4 HOH B 102 605 176 HOH H2O . H 4 HOH B 103 606 177 HOH H2O . H 4 HOH B 104 607 179 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . E 2 13.25 90.517 23.828 1 27.56 ? N1 PLP 501 B 1 HETATM 2 C C2 PLP . . . E 2 12.484 89.464 24.285 1 27.42 ? C2 PLP 501 B 1 HETATM 3 C C2A PLP . . . E 2 12.742 88.912 25.694 1 26.43 ? C2A PLP 501 B 1 HETATM 4 C C3 PLP . . . E 2 11.505 88.941 23.474 1 28.37 ? C3 PLP 501 B 1 HETATM 5 O O3 PLP . . . E 2 10.716 87.902 23.909 1 29.95 ? O3 PLP 501 B 1 HETATM 6 C C4 PLP . . . E 2 11.31 89.497 22.186 1 27.69 ? C4 PLP 501 B 1 HETATM 7 C C4A PLP . . . E 2 10.205 88.894 21.302 1 24.72 ? C4A PLP 501 B 1 HETATM 8 C C5 PLP . . . E 2 12.124 90.593 21.751 1 28.8 ? C5 PLP 501 B 1 HETATM 9 C C6 PLP . . . E 2 13.08 91.079 22.589 1 29.77 ? C6 PLP 501 B 1 HETATM 10 C C5A PLP . . . E 2 11.973 91.277 20.397 1 30.49 ? C5A PLP 501 B 1 HETATM 11 O O4P PLP . . . E 2 10.767 91.948 20.074 1 30.77 ? O4P PLP 501 B 1 HETATM 12 P P PLP . . . E 2 10.525 92.648 18.681 1 30.68 ? P PLP 501 B 1 HETATM 13 O O1P PLP . . . E 2 11.412 93.818 18.58 1 30.1 ? O1P PLP 501 B 1 HETATM 14 O O2P PLP . . . E 2 9.051 93.174 19.028 1 29.23 ? O2P PLP 501 B 1 HETATM 15 O O3P PLP . . . E 2 10.455 91.65 17.603 1 31.41 ? O3P PLP 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #