data_1EDM
#
_model_server_result.job_id            2btW5AWd_JW9aoc2KIZcmw 
_model_server_result.datetime_utc      '2024-12-26 12:04:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1edm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    1EDM 
#
_exptl.entry_id    1EDM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EDM 
_cell.length_a            40.3 
_cell.length_b            40.3 
_cell.length_c            98.3 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EDM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 B CYS 51 1_555 A SG CYS 17 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 11 B CYS 56 1_555 A SG CYS 26 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf3 A SG CYS 28 B CYS 73 1_555 A SG CYS 37 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 6 C CYS 51 1_555 B SG CYS 17 C CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf5 B SG CYS 11 C CYS 56 1_555 B SG CYS 26 C CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 B SG CYS 28 C CYS 73 1_555 B SG CYS 37 C CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc1 D CA CA . B CA 2 1_555 A OD2 ASP 2 B ASP 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc2 D CA CA . B CA 2 1_555 A O GLY 3 B GLY 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc3 D CA CA . B CA 2 1_555 A OE1 GLN 5 B GLN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc4 D CA CA . B CA 2 1_555 A OD2 ASP 19 B ASP 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc5 D CA CA . B CA 2 1_555 A OD1 ASP 19 B ASP 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc6 D CA CA . B CA 2 1_555 A O ASP 20 B ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc7 D CA CA . B CA 2 1_555 B OD1 ASN 13 C ASN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc8 C CA CA . B CA 3 1_555 A O SER 8 B SER 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc9 C CA CA . B CA 3 1_555 A OG SER 8 B SER 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc10 C CA CA . B CA 3 1_555 F O HOH . B HOH 204 6_446 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc11 C CA CA . B CA 3 1_555 F O HOH . B HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc12 C CA CA . B CA 3 1_555 F O HOH . B HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc13 C CA CA . B CA 3 1_555 F O HOH . B HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc14 C CA CA . B CA 3 1_555 F O HOH . B HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc15 C CA CA . B CA 3 1_555 F O HOH . B HOH 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc16 A OD1 ASN 13 B ASN 58 3_544 E CA CA . C CA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc17 E CA CA . C CA 1 1_555 B OD2 ASP 2 C ASP 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc18 E CA CA . C CA 1 1_555 B O GLY 3 C GLY 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc19 E CA CA . C CA 1 1_555 B OE1 GLN 5 C GLN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc20 E CA CA . C CA 1 1_555 B OD1 ASP 19 C ASP 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc21 E CA CA . C CA 1 1_555 B OD2 ASP 19 C ASP 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc22 E CA CA . C CA 1 1_555 B O ASP 20 C ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1EDM 
_atom_sites.fract_transf_matrix[1][1]    0.024814 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024814 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010173 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA B 1 3 3 CA CA . 
D 2 CA B 1 2 2 CA CA . 
E 2 CA C 1 1 1 CA CA . 
F 3 HOH B 1 201 201 HOH HOH . 
F 3 HOH B 2 202 202 HOH HOH . 
F 3 HOH B 3 203 203 HOH HOH . 
F 3 HOH B 4 204 204 HOH HOH . 
F 3 HOH B 5 206 206 HOH HOH . 
F 3 HOH B 6 208 208 HOH HOH . 
F 3 HOH B 7 209 209 HOH HOH . 
F 3 HOH B 8 210 210 HOH HOH . 
F 3 HOH B 9 211 211 HOH HOH . 
F 3 HOH B 10 212 212 HOH HOH . 
F 3 HOH B 11 214 214 HOH HOH . 
F 3 HOH B 12 216 216 HOH HOH . 
F 3 HOH B 13 217 217 HOH HOH . 
F 3 HOH B 14 218 218 HOH HOH . 
F 3 HOH B 15 219 219 HOH HOH . 
F 3 HOH B 16 224 224 HOH HOH . 
F 3 HOH B 17 225 225 HOH HOH . 
F 3 HOH B 18 226 226 HOH HOH . 
F 3 HOH B 19 228 228 HOH HOH . 
F 3 HOH B 20 229 229 HOH HOH . 
F 3 HOH B 21 230 230 HOH HOH . 
F 3 HOH B 22 231 231 HOH HOH . 
F 3 HOH B 23 234 234 HOH HOH . 
F 3 HOH B 24 235 235 HOH HOH . 
F 3 HOH B 25 236 236 HOH HOH . 
F 3 HOH B 26 237 237 HOH HOH . 
F 3 HOH B 27 240 240 HOH HOH . 
F 3 HOH B 28 241 241 HOH HOH . 
F 3 HOH B 29 243 243 HOH HOH . 
F 3 HOH B 30 247 247 HOH HOH . 
F 3 HOH B 31 248 248 HOH HOH . 
F 3 HOH B 32 250 250 HOH HOH . 
F 3 HOH B 33 251 251 HOH HOH . 
F 3 HOH B 34 254 254 HOH HOH . 
F 3 HOH B 35 255 255 HOH HOH . 
F 3 HOH B 36 258 258 HOH HOH . 
F 3 HOH B 37 259 259 HOH HOH . 
F 3 HOH B 38 261 261 HOH HOH . 
F 3 HOH B 39 263 263 HOH HOH . 
F 3 HOH B 40 264 264 HOH HOH . 
F 3 HOH B 41 265 265 HOH HOH . 
F 3 HOH B 42 266 266 HOH HOH . 
F 3 HOH B 43 272 272 HOH HOH . 
F 3 HOH B 44 276 276 HOH HOH . 
F 3 HOH B 45 279 279 HOH HOH . 
F 3 HOH B 46 280 280 HOH HOH . 
F 3 HOH B 47 281 281 HOH HOH . 
F 3 HOH B 48 400 400 HOH HOH . 
F 3 HOH B 49 402 402 HOH HOH . 
F 3 HOH B 50 403 403 HOH HOH . 
F 3 HOH B 51 404 404 HOH HOH . 
F 3 HOH B 52 406 406 HOH HOH . 
F 3 HOH B 53 408 408 HOH HOH . 
F 3 HOH B 54 410 410 HOH HOH . 
F 3 HOH B 55 411 411 HOH HOH . 
F 3 HOH B 56 412 412 HOH HOH . 
F 3 HOH B 57 414 414 HOH HOH . 
F 3 HOH B 58 415 415 HOH HOH . 
F 3 HOH B 59 417 417 HOH HOH . 
F 3 HOH B 60 420 420 HOH HOH . 
F 3 HOH B 61 421 421 HOH HOH . 
F 3 HOH B 62 424 424 HOH HOH . 
F 3 HOH B 63 425 425 HOH HOH . 
F 3 HOH B 64 428 428 HOH HOH . 
F 3 HOH B 65 429 429 HOH HOH . 
F 3 HOH B 66 435 435 HOH HOH . 
F 3 HOH B 67 438 438 HOH HOH . 
F 3 HOH B 68 439 439 HOH HOH . 
F 3 HOH B 69 442 442 HOH HOH . 
F 3 HOH B 70 444 444 HOH HOH . 
F 3 HOH B 71 445 445 HOH HOH . 
F 3 HOH B 72 446 446 HOH HOH . 
G 3 HOH C 1 200 200 HOH HOH . 
G 3 HOH C 2 205 205 HOH HOH . 
G 3 HOH C 3 207 207 HOH HOH . 
G 3 HOH C 4 213 213 HOH HOH . 
G 3 HOH C 5 215 215 HOH HOH . 
G 3 HOH C 6 220 220 HOH HOH . 
G 3 HOH C 7 221 221 HOH HOH . 
G 3 HOH C 8 222 222 HOH HOH . 
G 3 HOH C 9 223 223 HOH HOH . 
G 3 HOH C 10 227 227 HOH HOH . 
G 3 HOH C 11 232 232 HOH HOH . 
G 3 HOH C 12 233 233 HOH HOH . 
G 3 HOH C 13 238 238 HOH HOH . 
G 3 HOH C 14 239 239 HOH HOH . 
G 3 HOH C 15 242 242 HOH HOH . 
G 3 HOH C 16 244 244 HOH HOH . 
G 3 HOH C 17 245 245 HOH HOH . 
G 3 HOH C 18 246 246 HOH HOH . 
G 3 HOH C 19 249 249 HOH HOH . 
G 3 HOH C 20 252 252 HOH HOH . 
G 3 HOH C 21 253 253 HOH HOH . 
G 3 HOH C 22 256 256 HOH HOH . 
G 3 HOH C 23 257 257 HOH HOH . 
G 3 HOH C 24 260 260 HOH HOH . 
G 3 HOH C 25 262 262 HOH HOH . 
G 3 HOH C 26 267 267 HOH HOH . 
G 3 HOH C 27 268 268 HOH HOH . 
G 3 HOH C 28 269 269 HOH HOH . 
G 3 HOH C 29 270 270 HOH HOH . 
G 3 HOH C 30 271 271 HOH HOH . 
G 3 HOH C 31 273 273 HOH HOH . 
G 3 HOH C 32 274 274 HOH HOH . 
G 3 HOH C 33 275 275 HOH HOH . 
G 3 HOH C 34 277 277 HOH HOH . 
G 3 HOH C 35 278 278 HOH HOH . 
G 3 HOH C 36 282 282 HOH HOH . 
G 3 HOH C 37 401 401 HOH HOH . 
G 3 HOH C 38 405 405 HOH HOH . 
G 3 HOH C 39 407 407 HOH HOH . 
G 3 HOH C 40 409 409 HOH HOH . 
G 3 HOH C 41 413 413 HOH HOH . 
G 3 HOH C 42 416 416 HOH HOH . 
G 3 HOH C 43 418 418 HOH HOH . 
G 3 HOH C 44 419 419 HOH HOH . 
G 3 HOH C 45 422 422 HOH HOH . 
G 3 HOH C 46 423 423 HOH HOH . 
G 3 HOH C 47 426 426 HOH HOH . 
G 3 HOH C 48 427 427 HOH HOH . 
G 3 HOH C 49 430 430 HOH HOH . 
G 3 HOH C 50 431 431 HOH HOH . 
G 3 HOH C 51 432 432 HOH HOH . 
G 3 HOH C 52 433 433 HOH HOH . 
G 3 HOH C 53 434 434 HOH HOH . 
G 3 HOH C 54 436 436 HOH HOH . 
G 3 HOH C 55 437 437 HOH HOH . 
G 3 HOH C 56 440 440 HOH HOH . 
G 3 HOH C 57 441 441 HOH HOH . 
G 3 HOH C 58 443 443 HOH HOH . 
G 3 HOH C 59 447 447 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               25.481 
_atom_site.Cartn_y               9.763 
_atom_site.Cartn_z               39.635 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        11.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#