data_1EDU
#
_model_server_result.job_id            yNXlB4CKvRdP1pY7Jw_ARQ 
_model_server_result.datetime_utc      '2024-11-13 15:17:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1edu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":789}' 
#
_entry.id    1EDU 
#
_exptl.entry_id    1EDU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1EDU 
_cell.length_a            49.807 
_cell.length_b            49.807 
_cell.length_c            99.967 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EDU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 28 A LEU 29 1_555 A N MSE 29 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 29 A MSE 30 1_555 A N SER 30 A SER 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C ILE 45 A ILE 46 1_555 A N MSE 46 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C MSE 46 A MSE 47 1_555 A N SER 47 A SER 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C SER 47 A SER 48 1_555 A N MSE 48 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MSE 48 A MSE 49 1_555 A N ILE 49 A ILE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C ALA 66 A ALA 67 1_555 A N MSE 67 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 A C MSE 67 A MSE 68 1_555 A N THR 68 A THR 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 A C LEU 69 A LEU 70 1_555 A N MSE 70 A MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 A C MSE 70 A MSE 71 1_555 A N GLU 71 A GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 A C ASN 88 A ASN 89 1_555 A N MSE 89 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 A C MSE 89 A MSE 90 1_555 A N TYR 90 A TYR 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     1EDU 
_atom_sites.fract_transf_matrix[1][1]    0.020077 
_atom_sites.fract_transf_matrix[1][2]    0.011592 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023183 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010003 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 788 788 EDO EGL . 
C 2 EDO A 1 789 789 EDO EGL . 
D 2 EDO A 1 793 793 EDO EGL . 
E 2 EDO A 1 794 794 EDO EGL . 
F 3 HOH A 1 795 1 HOH WAT . 
F 3 HOH A 2 796 2 HOH WAT . 
F 3 HOH A 3 797 3 HOH WAT . 
F 3 HOH A 4 798 4 HOH WAT . 
F 3 HOH A 5 799 5 HOH WAT . 
F 3 HOH A 6 800 6 HOH WAT . 
F 3 HOH A 7 801 7 HOH WAT . 
F 3 HOH A 8 802 8 HOH WAT . 
F 3 HOH A 9 803 9 HOH WAT . 
F 3 HOH A 10 804 10 HOH WAT . 
F 3 HOH A 11 805 11 HOH WAT . 
F 3 HOH A 12 806 12 HOH WAT . 
F 3 HOH A 13 807 13 HOH WAT . 
F 3 HOH A 14 808 14 HOH WAT . 
F 3 HOH A 15 809 15 HOH WAT . 
F 3 HOH A 16 810 16 HOH WAT . 
F 3 HOH A 17 811 17 HOH WAT . 
F 3 HOH A 18 812 18 HOH WAT . 
F 3 HOH A 19 813 19 HOH WAT . 
F 3 HOH A 20 814 20 HOH WAT . 
F 3 HOH A 21 815 21 HOH WAT . 
F 3 HOH A 22 816 22 HOH WAT . 
F 3 HOH A 23 817 23 HOH WAT . 
F 3 HOH A 24 818 25 HOH WAT . 
F 3 HOH A 25 819 26 HOH WAT . 
F 3 HOH A 26 820 27 HOH WAT . 
F 3 HOH A 27 821 28 HOH WAT . 
F 3 HOH A 28 822 29 HOH WAT . 
F 3 HOH A 29 823 30 HOH WAT . 
F 3 HOH A 30 824 31 HOH WAT . 
F 3 HOH A 31 825 32 HOH WAT . 
F 3 HOH A 32 826 33 HOH WAT . 
F 3 HOH A 33 827 34 HOH WAT . 
F 3 HOH A 34 828 35 HOH WAT . 
F 3 HOH A 35 829 36 HOH WAT . 
F 3 HOH A 36 830 37 HOH WAT . 
F 3 HOH A 37 831 38 HOH WAT . 
F 3 HOH A 38 832 39 HOH WAT . 
F 3 HOH A 39 833 40 HOH WAT . 
F 3 HOH A 40 834 41 HOH WAT . 
F 3 HOH A 41 835 42 HOH WAT . 
F 3 HOH A 42 836 43 HOH WAT . 
F 3 HOH A 43 837 44 HOH WAT . 
F 3 HOH A 44 838 46 HOH WAT . 
F 3 HOH A 45 839 47 HOH WAT . 
F 3 HOH A 46 840 48 HOH WAT . 
F 3 HOH A 47 841 49 HOH WAT . 
F 3 HOH A 48 842 50 HOH WAT . 
F 3 HOH A 49 843 51 HOH WAT . 
F 3 HOH A 50 844 52 HOH WAT . 
F 3 HOH A 51 845 53 HOH WAT . 
F 3 HOH A 52 846 54 HOH WAT . 
F 3 HOH A 53 847 55 HOH WAT . 
F 3 HOH A 54 848 56 HOH WAT . 
F 3 HOH A 55 849 57 HOH WAT . 
F 3 HOH A 56 850 58 HOH WAT . 
F 3 HOH A 57 851 59 HOH WAT . 
F 3 HOH A 58 852 60 HOH WAT . 
F 3 HOH A 59 853 61 HOH WAT . 
F 3 HOH A 60 854 62 HOH WAT . 
F 3 HOH A 61 855 63 HOH WAT . 
F 3 HOH A 62 856 64 HOH WAT . 
F 3 HOH A 63 857 65 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 29.779 34.454 3.413 1 28.57 ? C1 EDO 789 A 1 
HETATM 2 O O1 EDO . . . C 2 29.061 33.539 4.263 1 30.53 ? O1 EDO 789 A 1 
HETATM 3 C C2 EDO . . . C 2 28.802 35.059 2.388 1 34.51 ? C2 EDO 789 A 1 
HETATM 4 O O2 EDO . . . C 2 27.657 35.545 3.102 1 35.15 ? O2 EDO 789 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#