data_1EE9 # _model_server_result.job_id sjIcja5c0LbGAEaNqbC4SA _model_server_result.datetime_utc '2025-08-23 21:57:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ee9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":321}' # _entry.id 1EE9 # _exptl.entry_id 1EE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EE9 _cell.length_a 73.6 _cell.length_b 73.6 _cell.length_c 161.601 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1EE9 _atom_sites.fract_transf_matrix[1][1] 0.013587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 321 1 NAD NAD . C 3 HOH A 1 322 1 HOH WAT . C 3 HOH A 2 323 2 HOH WAT . C 3 HOH A 3 324 3 HOH WAT . C 3 HOH A 4 325 4 HOH WAT . C 3 HOH A 5 326 5 HOH WAT . C 3 HOH A 6 327 6 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 5.529 14.124 -2.356 1 57.95 ? PA NAD 321 A 1 HETATM 2 O O1A NAD . . . B 2 6.834 13.688 -1.797 1 57.95 ? O1A NAD 321 A 1 HETATM 3 O O2A NAD . . . B 2 4.395 13.168 -2.44 1 57.95 ? O2A NAD 321 A 1 HETATM 4 O O5B NAD . . . B 2 5.057 15.439 -1.57 1 57.95 ? O5B NAD 321 A 1 HETATM 5 C C5B NAD . . . B 2 3.733 15.939 -1.765 1 57.95 ? C5B NAD 321 A 1 HETATM 6 C C4B NAD . . . B 2 3.378 16.791 -0.563 1 57.95 ? C4B NAD 321 A 1 HETATM 7 O O4B NAD . . . B 2 1.943 16.896 -0.578 1 57.95 ? O4B NAD 321 A 1 HETATM 8 C C3B NAD . . . B 2 3.75 16.097 0.739 1 57.95 ? C3B NAD 321 A 1 HETATM 9 O O3B NAD . . . B 2 3.939 16.99 1.845 1 57.95 ? O3B NAD 321 A 1 HETATM 10 C C2B NAD . . . B 2 2.564 15.173 0.922 1 57.95 ? C2B NAD 321 A 1 HETATM 11 O O2B NAD . . . B 2 2.464 14.777 2.292 1 57.95 ? O2B NAD 321 A 1 HETATM 12 C C1B NAD . . . B 2 1.412 16.062 0.469 1 57.95 ? C1B NAD 321 A 1 HETATM 13 N N9A NAD . . . B 2 0.21 15.298 0.043 1 57.95 ? N9A NAD 321 A 1 HETATM 14 C C8A NAD . . . B 2 0.174 14.272 -0.829 1 57.95 ? C8A NAD 321 A 1 HETATM 15 N N7A NAD . . . B 2 -1.019 13.657 -0.812 1 57.95 ? N7A NAD 321 A 1 HETATM 16 C C5A NAD . . . B 2 -1.706 14.337 0.092 1 57.95 ? C5A NAD 321 A 1 HETATM 17 C C6A NAD . . . B 2 -3.017 14.066 0.462 1 57.95 ? C6A NAD 321 A 1 HETATM 18 N N6A NAD . . . B 2 -3.706 13.056 -0.057 1 57.95 ? N6A NAD 321 A 1 HETATM 19 N N1A NAD . . . B 2 -3.551 14.868 1.4 1 57.95 ? N1A NAD 321 A 1 HETATM 20 C C2A NAD . . . B 2 -2.847 15.871 1.935 1 57.95 ? C2A NAD 321 A 1 HETATM 21 N N3A NAD . . . B 2 -1.582 16.126 1.58 1 57.95 ? N3A NAD 321 A 1 HETATM 22 C C4A NAD . . . B 2 -0.977 15.365 0.644 1 57.95 ? C4A NAD 321 A 1 HETATM 23 O O3 NAD . . . B 2 5.728 14.738 -3.825 1 100 ? O3 NAD 321 A 1 HETATM 24 P PN NAD . . . B 2 6.332 16.085 -4.466 1 100 ? PN NAD 321 A 1 HETATM 25 O O1N NAD . . . B 2 6.953 15.694 -5.758 1 100 ? O1N NAD 321 A 1 HETATM 26 O O2N NAD . . . B 2 7.165 16.811 -3.475 1 100 ? O2N NAD 321 A 1 HETATM 27 O O5D NAD . . . B 2 5.022 16.991 -4.799 1 100 ? O5D NAD 321 A 1 HETATM 28 C C5D NAD . . . B 2 5.082 18.346 -5.312 1 100 ? C5D NAD 321 A 1 HETATM 29 C C4D NAD . . . B 2 4.043 18.677 -6.395 1 100 ? C4D NAD 321 A 1 HETATM 30 O O4D NAD . . . B 2 3.696 20.078 -6.35 1 100 ? O4D NAD 321 A 1 HETATM 31 C C3D NAD . . . B 2 4.548 18.431 -7.819 1 100 ? C3D NAD 321 A 1 HETATM 32 O O3D NAD . . . B 2 4.287 17.104 -8.303 1 100 ? O3D NAD 321 A 1 HETATM 33 C C2D NAD . . . B 2 3.759 19.426 -8.662 1 100 ? C2D NAD 321 A 1 HETATM 34 O O2D NAD . . . B 2 2.535 18.833 -9.134 1 100 ? O2D NAD 321 A 1 HETATM 35 C C1D NAD . . . B 2 3.564 20.595 -7.7 1 100 ? C1D NAD 321 A 1 HETATM 36 N N1N NAD . . . B 2 4.505 21.71 -8.02 1 100 ? N1N NAD 321 A 1 HETATM 37 C C2N NAD . . . B 2 4.168 22.661 -9.016 1 100 ? C2N NAD 321 A 1 HETATM 38 C C3N NAD . . . B 2 5.036 23.718 -9.327 1 100 ? C3N NAD 321 A 1 HETATM 39 C C7N NAD . . . B 2 4.61 24.888 -10.233 1 100 ? C7N NAD 321 A 1 HETATM 40 O O7N NAD . . . B 2 5.442 25.625 -10.756 1 100 ? O7N NAD 321 A 1 HETATM 41 N N7N NAD . . . B 2 3.306 25.067 -10.397 1 100 ? N7N NAD 321 A 1 HETATM 42 C C4N NAD . . . B 2 6.259 23.801 -8.649 1 100 ? C4N NAD 321 A 1 HETATM 43 C C5N NAD . . . B 2 6.612 22.874 -7.662 1 100 ? C5N NAD 321 A 1 HETATM 44 C C6N NAD . . . B 2 5.736 21.837 -7.337 1 100 ? C6N NAD 321 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #