data_1EF2 # _model_server_result.job_id IWGZZirRTVvwapHddds_ug _model_server_result.datetime_utc '2025-04-23 16:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ef2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4774}' # _entry.id 1EF2 # _exptl.entry_id 1EF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EF2 _cell.length_a 170.8 _cell.length_b 170.8 _cell.length_c 170.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 215 A LEU 1216 1_555 A N KCX 216 A KCX 1217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C KCX 216 A KCX 1217 1_555 A N ILE 217 A ILE 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 F O HOH . A HOH 500 1_555 D MN MN . A MN 4774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 F O HOH . A HOH 500 1_555 E MN MN . A MN 4775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 F O HOH . A HOH 502 1_555 E MN MN . A MN 4775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 A NE2 HIS 133 A HIS 1134 1_555 E MN MN . A MN 4775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc5 A NE2 HIS 135 A HIS 1136 1_555 E MN MN . A MN 4775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 A OQ1 KCX 216 A KCX 1217 1_555 D MN MN . A MN 4774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc7 A OQ2 KCX 216 A KCX 1217 1_555 E MN MN . A MN 4775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc8 A ND1 HIS 245 A HIS 1246 1_555 D MN MN . A MN 4774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 A NE2 HIS 271 A HIS 1272 1_555 D MN MN . A MN 4774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc10 A OD2 ASP 359 A ASP 1360 1_555 E MN MN . A MN 4775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1EF2 _atom_sites.fract_transf_matrix[1][1] 0.005855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 4774 4774 MN MN1 . E 4 MN A 1 4775 4775 MN MN2 . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 5 5 HOH HOH . F 5 HOH A 4 6 6 HOH HOH . F 5 HOH A 5 7 7 HOH HOH . F 5 HOH A 6 8 8 HOH HOH . F 5 HOH A 7 9 9 HOH HOH . F 5 HOH A 8 10 10 HOH HOH . F 5 HOH A 9 11 11 HOH HOH . F 5 HOH A 10 12 12 HOH HOH . F 5 HOH A 11 13 13 HOH HOH . F 5 HOH A 12 14 14 HOH HOH . F 5 HOH A 13 15 15 HOH HOH . F 5 HOH A 14 16 16 HOH HOH . F 5 HOH A 15 17 17 HOH HOH . F 5 HOH A 16 19 19 HOH HOH . F 5 HOH A 17 23 23 HOH HOH . F 5 HOH A 18 24 24 HOH HOH . F 5 HOH A 19 25 25 HOH HOH . F 5 HOH A 20 26 26 HOH HOH . F 5 HOH A 21 27 27 HOH HOH . F 5 HOH A 22 28 28 HOH HOH . F 5 HOH A 23 29 29 HOH HOH . F 5 HOH A 24 30 30 HOH HOH . F 5 HOH A 25 31 31 HOH HOH . F 5 HOH A 26 32 32 HOH HOH . F 5 HOH A 27 33 33 HOH HOH . F 5 HOH A 28 34 34 HOH HOH . F 5 HOH A 29 35 35 HOH HOH . F 5 HOH A 30 36 36 HOH HOH . F 5 HOH A 31 37 37 HOH HOH . F 5 HOH A 32 38 38 HOH HOH . F 5 HOH A 33 39 39 HOH HOH . F 5 HOH A 34 40 40 HOH HOH . F 5 HOH A 35 41 41 HOH HOH . F 5 HOH A 36 42 42 HOH HOH . F 5 HOH A 37 43 43 HOH HOH . F 5 HOH A 38 44 44 HOH HOH . F 5 HOH A 39 45 45 HOH HOH . F 5 HOH A 40 46 46 HOH HOH . F 5 HOH A 41 47 47 HOH HOH . F 5 HOH A 42 48 48 HOH HOH . F 5 HOH A 43 49 49 HOH HOH . F 5 HOH A 44 50 50 HOH HOH . F 5 HOH A 45 51 51 HOH HOH . F 5 HOH A 46 52 52 HOH HOH . F 5 HOH A 47 53 53 HOH HOH . F 5 HOH A 48 54 54 HOH HOH . F 5 HOH A 49 55 55 HOH HOH . F 5 HOH A 50 56 56 HOH HOH . F 5 HOH A 51 57 57 HOH HOH . F 5 HOH A 52 58 58 HOH HOH . F 5 HOH A 53 59 59 HOH HOH . F 5 HOH A 54 61 61 HOH HOH . F 5 HOH A 55 62 62 HOH HOH . F 5 HOH A 56 63 63 HOH HOH . F 5 HOH A 57 64 64 HOH HOH . F 5 HOH A 58 65 65 HOH HOH . F 5 HOH A 59 66 66 HOH HOH . F 5 HOH A 60 67 67 HOH HOH . F 5 HOH A 61 68 68 HOH HOH . F 5 HOH A 62 69 69 HOH HOH . F 5 HOH A 63 70 70 HOH HOH . F 5 HOH A 64 71 71 HOH HOH . F 5 HOH A 65 73 73 HOH HOH . F 5 HOH A 66 74 74 HOH HOH . F 5 HOH A 67 76 76 HOH HOH . F 5 HOH A 68 77 77 HOH HOH . F 5 HOH A 69 79 79 HOH HOH . F 5 HOH A 70 80 80 HOH HOH . F 5 HOH A 71 81 81 HOH HOH . F 5 HOH A 72 82 82 HOH HOH . F 5 HOH A 73 83 83 HOH HOH . F 5 HOH A 74 86 86 HOH HOH . F 5 HOH A 75 87 87 HOH HOH . F 5 HOH A 76 88 88 HOH HOH . F 5 HOH A 77 89 89 HOH HOH . F 5 HOH A 78 90 90 HOH HOH . F 5 HOH A 79 91 91 HOH HOH . F 5 HOH A 80 92 92 HOH HOH . F 5 HOH A 81 93 93 HOH HOH . F 5 HOH A 82 94 94 HOH HOH . F 5 HOH A 83 96 96 HOH HOH . F 5 HOH A 84 98 98 HOH HOH . F 5 HOH A 85 99 99 HOH HOH . F 5 HOH A 86 100 100 HOH HOH . F 5 HOH A 87 101 101 HOH HOH . F 5 HOH A 88 104 104 HOH HOH . F 5 HOH A 89 105 105 HOH HOH . F 5 HOH A 90 106 106 HOH HOH . F 5 HOH A 91 107 107 HOH HOH . F 5 HOH A 92 109 109 HOH HOH . F 5 HOH A 93 110 110 HOH HOH . F 5 HOH A 94 111 111 HOH HOH . F 5 HOH A 95 112 112 HOH HOH . F 5 HOH A 96 113 113 HOH HOH . F 5 HOH A 97 114 114 HOH HOH . F 5 HOH A 98 115 115 HOH HOH . F 5 HOH A 99 116 116 HOH HOH . F 5 HOH A 100 117 117 HOH HOH . F 5 HOH A 101 118 118 HOH HOH . F 5 HOH A 102 120 120 HOH HOH . F 5 HOH A 103 122 122 HOH HOH . F 5 HOH A 104 123 123 HOH HOH . F 5 HOH A 105 124 124 HOH HOH . F 5 HOH A 106 126 126 HOH HOH . F 5 HOH A 107 127 127 HOH HOH . F 5 HOH A 108 128 128 HOH HOH . F 5 HOH A 109 129 129 HOH HOH . F 5 HOH A 110 130 130 HOH HOH . F 5 HOH A 111 131 131 HOH HOH . F 5 HOH A 112 133 133 HOH HOH . F 5 HOH A 113 134 134 HOH HOH . F 5 HOH A 114 135 135 HOH HOH . F 5 HOH A 115 137 137 HOH HOH . F 5 HOH A 116 138 138 HOH HOH . F 5 HOH A 117 139 139 HOH HOH . F 5 HOH A 118 140 140 HOH HOH . F 5 HOH A 119 141 141 HOH HOH . F 5 HOH A 120 144 144 HOH HOH . F 5 HOH A 121 145 145 HOH HOH . F 5 HOH A 122 147 147 HOH HOH . F 5 HOH A 123 148 148 HOH HOH . F 5 HOH A 124 149 149 HOH HOH . F 5 HOH A 125 150 150 HOH HOH . F 5 HOH A 126 151 151 HOH HOH . F 5 HOH A 127 152 152 HOH HOH . F 5 HOH A 128 153 153 HOH HOH . F 5 HOH A 129 154 154 HOH HOH . F 5 HOH A 130 155 155 HOH HOH . F 5 HOH A 131 156 156 HOH HOH . F 5 HOH A 132 157 157 HOH HOH . F 5 HOH A 133 158 158 HOH HOH . F 5 HOH A 134 159 159 HOH HOH . F 5 HOH A 135 160 160 HOH HOH . F 5 HOH A 136 161 161 HOH HOH . F 5 HOH A 137 162 162 HOH HOH . F 5 HOH A 138 163 163 HOH HOH . F 5 HOH A 139 165 165 HOH HOH . F 5 HOH A 140 166 166 HOH HOH . F 5 HOH A 141 167 167 HOH HOH . F 5 HOH A 142 168 168 HOH HOH . F 5 HOH A 143 169 169 HOH HOH . F 5 HOH A 144 171 171 HOH HOH . F 5 HOH A 145 172 172 HOH HOH . F 5 HOH A 146 173 173 HOH HOH . F 5 HOH A 147 174 174 HOH HOH . F 5 HOH A 148 175 175 HOH HOH . F 5 HOH A 149 500 500 HOH HOH . F 5 HOH A 150 501 501 HOH HOH . F 5 HOH A 151 502 502 HOH HOH . G 5 HOH B 1 72 72 HOH HOH . G 5 HOH B 2 78 78 HOH HOH . G 5 HOH B 3 108 108 HOH HOH . G 5 HOH B 4 121 121 HOH HOH . G 5 HOH B 5 125 125 HOH HOH . G 5 HOH B 6 132 132 HOH HOH . G 5 HOH B 7 142 142 HOH HOH . G 5 HOH B 8 143 143 HOH HOH . G 5 HOH B 9 164 164 HOH HOH . H 5 HOH C 1 4 4 HOH HOH . H 5 HOH C 2 18 18 HOH HOH . H 5 HOH C 3 20 20 HOH HOH . H 5 HOH C 4 21 21 HOH HOH . H 5 HOH C 5 22 22 HOH HOH . H 5 HOH C 6 60 60 HOH HOH . H 5 HOH C 7 75 75 HOH HOH . H 5 HOH C 8 84 84 HOH HOH . H 5 HOH C 9 85 85 HOH HOH . H 5 HOH C 10 95 95 HOH HOH . H 5 HOH C 11 97 97 HOH HOH . H 5 HOH C 12 102 102 HOH HOH . H 5 HOH C 13 103 103 HOH HOH . H 5 HOH C 14 119 119 HOH HOH . H 5 HOH C 15 136 136 HOH HOH . H 5 HOH C 16 146 146 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 66.767 _atom_site.Cartn_y 107.528 _atom_site.Cartn_z 71.031 _atom_site.occupancy 0.95 _atom_site.B_iso_or_equiv 17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 4774 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #