data_1EF3
#
_model_server_result.job_id            YQiBwvX6dLTwSB6D0VXvQg 
_model_server_result.datetime_utc      '2024-12-22 01:49:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ef3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":320}' 
#
_entry.id    1EF3 
#
_exptl.entry_id    1EF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.6 
_cell.angle_gamma         90 
_cell.entry_id            1EF3 
_cell.length_a            96.14 
_cell.length_b            62.56 
_cell.length_c            118.99 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 269 n n 
PA O2A NAP sing 270 n n 
PA O5B NAP sing 271 n n 
PA O3 NAP sing 272 n n 
O2A HOA2 NAP sing 273 n n 
O5B C5B NAP sing 274 n n 
C5B C4B NAP sing 275 n n 
C5B H51A NAP sing 276 n n 
C5B H52A NAP sing 277 n n 
C4B O4B NAP sing 278 n n 
C4B C3B NAP sing 279 n n 
C4B H4B NAP sing 280 n n 
O4B C1B NAP sing 281 n n 
C3B O3B NAP sing 282 n n 
C3B C2B NAP sing 283 n n 
C3B H3B NAP sing 284 n n 
O3B HO3A NAP sing 285 n n 
C2B O2B NAP sing 286 n n 
C2B C1B NAP sing 287 n n 
C2B H2B NAP sing 288 n n 
O2B P2B NAP sing 289 n n 
C1B N9A NAP sing 290 n n 
C1B H1B NAP sing 291 n n 
N9A C8A NAP sing 292 n y 
N9A C4A NAP sing 293 n y 
C8A N7A NAP doub 294 n y 
C8A H8A NAP sing 295 n n 
N7A C5A NAP sing 296 n y 
C5A C6A NAP sing 297 n y 
C5A C4A NAP doub 298 n y 
C6A N6A NAP sing 299 n n 
C6A N1A NAP doub 300 n y 
N6A H61A NAP sing 301 n n 
N6A H62A NAP sing 302 n n 
N1A C2A NAP sing 303 n y 
C2A N3A NAP doub 304 n y 
C2A H2A NAP sing 305 n n 
N3A C4A NAP sing 306 n y 
O3 PN NAP sing 307 n n 
PN O1N NAP doub 308 n n 
PN O2N NAP sing 309 n n 
PN O5D NAP sing 310 n n 
O5D C5D NAP sing 311 n n 
C5D C4D NAP sing 312 n n 
C5D H51N NAP sing 313 n n 
C5D H52N NAP sing 314 n n 
C4D O4D NAP sing 315 n n 
C4D C3D NAP sing 316 n n 
C4D H4D NAP sing 317 n n 
O4D C1D NAP sing 318 n n 
C3D O3D NAP sing 319 n n 
C3D C2D NAP sing 320 n n 
C3D H3D NAP sing 321 n n 
O3D HO3N NAP sing 322 n n 
C2D O2D NAP sing 323 n n 
C2D C1D NAP sing 324 n n 
C2D H2D NAP sing 325 n n 
O2D HO2N NAP sing 326 n n 
C1D N1N NAP sing 327 n n 
C1D H1D NAP sing 328 n n 
N1N C2N NAP sing 329 n y 
N1N C6N NAP doub 330 n y 
C2N C3N NAP doub 331 n y 
C2N H2N NAP sing 332 n n 
C3N C7N NAP sing 333 n n 
C3N C4N NAP sing 334 n y 
C7N O7N NAP doub 335 n n 
C7N N7N NAP sing 336 n n 
N7N H71N NAP sing 337 n n 
N7N H72N NAP sing 338 n n 
C4N C5N NAP doub 339 n y 
C4N H4N NAP sing 340 n n 
C5N C6N NAP sing 341 n y 
C5N H5N NAP sing 342 n n 
C6N H6N NAP sing 343 n n 
P2B O1X NAP doub 344 n n 
P2B O2X NAP sing 345 n n 
P2B O3X NAP sing 346 n n 
O2X HOP2 NAP sing 347 n n 
O3X HOP3 NAP sing 348 n n 
#
_atom_sites.entry_id                     1EF3 
_atom_sites.fract_transf_matrix[1][1]    0.0104 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002135 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01599 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008644 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 320 320 NAP NAP . 
D 3 FID A 1 340 340 FID FID . 
E 2 NAP B 1 330 330 NAP NAP . 
F 3 FID B 1 350 350 FID FID . 
G 4 HOH A 1 401 401 HOH HOH . 
G 4 HOH A 2 403 403 HOH HOH . 
G 4 HOH A 3 404 404 HOH HOH . 
G 4 HOH A 4 405 405 HOH HOH . 
G 4 HOH A 5 406 406 HOH HOH . 
G 4 HOH A 6 414 414 HOH HOH . 
G 4 HOH A 7 415 415 HOH HOH . 
G 4 HOH A 8 416 416 HOH HOH . 
G 4 HOH A 9 419 419 HOH HOH . 
H 4 HOH B 1 402 402 HOH HOH . 
H 4 HOH B 2 407 407 HOH HOH . 
H 4 HOH B 3 408 408 HOH HOH . 
H 4 HOH B 4 409 409 HOH HOH . 
H 4 HOH B 5 410 410 HOH HOH . 
H 4 HOH B 6 411 411 HOH HOH . 
H 4 HOH B 7 412 412 HOH HOH . 
H 4 HOH B 8 413 413 HOH HOH . 
H 4 HOH B 9 417 417 HOH HOH . 
H 4 HOH B 10 418 418 HOH HOH . 
H 4 HOH B 11 420 420 HOH HOH . 
H 4 HOH B 12 421 421 HOH HOH . 
H 4 HOH B 13 422 422 HOH HOH . 
H 4 HOH B 14 423 423 HOH HOH . 
H 4 HOH B 15 424 424 HOH HOH . 
H 4 HOH B 16 425 425 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 2 -34.167 17.72 -47.175 1 4.96 ? PA NAP 320 A 1 
HETATM 2 O O1A NAP . . . C 2 -34.944 17.79 -45.932 1 4.96 ? O1A NAP 320 A 1 
HETATM 3 O O2A NAP . . . C 2 -32.915 18.377 -47.223 1 4.96 ? O2A NAP 320 A 1 
HETATM 4 O O5B NAP . . . C 2 -35.163 18.232 -48.338 1 4.96 ? O5B NAP 320 A 1 
HETATM 5 C C5B NAP . . . C 2 -34.877 18.062 -49.733 1 4.96 ? C5B NAP 320 A 1 
HETATM 6 C C4B NAP . . . C 2 -36.059 18.58 -50.45 1 4.96 ? C4B NAP 320 A 1 
HETATM 7 O O4B NAP . . . C 2 -36.195 19.943 -50.1 1 4.96 ? O4B NAP 320 A 1 
HETATM 8 C C3B NAP . . . C 2 -35.975 18.527 -51.932 1 4.96 ? C3B NAP 320 A 1 
HETATM 9 O O3B NAP . . . C 2 -37.309 18.188 -52.434 1 4.96 ? O3B NAP 320 A 1 
HETATM 10 C C2B NAP . . . C 2 -35.567 19.929 -52.317 1 4.96 ? C2B NAP 320 A 1 
HETATM 11 O O2B NAP . . . C 2 -36.015 20.304 -53.658 1 4.96 ? O2B NAP 320 A 1 
HETATM 12 C C1B NAP . . . C 2 -36.254 20.748 -51.282 1 4.96 ? C1B NAP 320 A 1 
HETATM 13 N N9A NAP . . . C 2 -35.608 22.054 -50.946 1 4.96 ? N9A NAP 320 A 1 
HETATM 14 C C8A NAP . . . C 2 -34.274 22.346 -50.669 1 4.96 ? C8A NAP 320 A 1 
HETATM 15 N N7A NAP . . . C 2 -34.081 23.602 -50.409 1 4.96 ? N7A NAP 320 A 1 
HETATM 16 C C5A NAP . . . C 2 -35.328 24.17 -50.517 1 4.96 ? C5A NAP 320 A 1 
HETATM 17 C C6A NAP . . . C 2 -35.768 25.477 -50.351 1 4.96 ? C6A NAP 320 A 1 
HETATM 18 N N6A NAP . . . C 2 -34.938 26.462 -50.027 1 4.96 ? N6A NAP 320 A 1 
HETATM 19 N N1A NAP . . . C 2 -37.102 25.727 -50.53 1 4.96 ? N1A NAP 320 A 1 
HETATM 20 C C2A NAP . . . C 2 -37.949 24.724 -50.858 1 4.96 ? C2A NAP 320 A 1 
HETATM 21 N N3A NAP . . . C 2 -37.604 23.458 -51.032 1 4.96 ? N3A NAP 320 A 1 
HETATM 22 C C4A NAP . . . C 2 -36.261 23.25 -50.843 1 4.96 ? C4A NAP 320 A 1 
HETATM 23 O O3 NAP . . . C 2 -34.026 16.196 -47.59 1 4.96 ? O3 NAP 320 A 1 
HETATM 24 P PN NAP . . . C 2 -32.892 15.069 -47.479 1 4.96 ? PN NAP 320 A 1 
HETATM 25 O O1N NAP . . . C 2 -32.305 14.95 -48.815 1 4.96 ? O1N NAP 320 A 1 
HETATM 26 O O2N NAP . . . C 2 -33.605 13.818 -46.945 1 4.96 ? O2N NAP 320 A 1 
HETATM 27 O O5D NAP . . . C 2 -31.836 15.479 -46.327 1 4.96 ? O5D NAP 320 A 1 
HETATM 28 C C5D NAP . . . C 2 -30.705 16.355 -46.627 1 4.96 ? C5D NAP 320 A 1 
HETATM 29 C C4D NAP . . . C 2 -29.39 15.608 -46.856 1 4.96 ? C4D NAP 320 A 1 
HETATM 30 O O4D NAP . . . C 2 -29.053 14.883 -45.683 1 4.96 ? O4D NAP 320 A 1 
HETATM 31 C C3D NAP . . . C 2 -29.48 14.535 -47.891 1 4.96 ? C3D NAP 320 A 1 
HETATM 32 O O3D NAP . . . C 2 -29.53 15.018 -49.222 1 4.96 ? O3D NAP 320 A 1 
HETATM 33 C C2D NAP . . . C 2 -28.269 13.712 -47.599 1 4.96 ? C2D NAP 320 A 1 
HETATM 34 O O2D NAP . . . C 2 -27.123 14.289 -48.182 1 4.96 ? O2D NAP 320 A 1 
HETATM 35 C C1D NAP . . . C 2 -28.303 13.723 -46.033 1 4.96 ? C1D NAP 320 A 1 
HETATM 36 N N1N NAP . . . C 2 -29.01 12.538 -45.561 1 4.96 ? N1N NAP 320 A 1 
HETATM 37 C C2N NAP . . . C 2 -28.269 11.644 -44.796 1 4.96 ? C2N NAP 320 A 1 
HETATM 38 C C3N NAP . . . C 2 -28.94 10.457 -44.342 1 4.96 ? C3N NAP 320 A 1 
HETATM 39 C C7N NAP . . . C 2 -28.261 9.462 -43.547 1 4.96 ? C7N NAP 320 A 1 
HETATM 40 O O7N NAP . . . C 2 -28.805 8.439 -43.188 1 4.96 ? O7N NAP 320 A 1 
HETATM 41 N N7N NAP . . . C 2 -27.052 9.689 -43.08 1 4.96 ? N7N NAP 320 A 1 
HETATM 42 C C4N NAP . . . C 2 -30.272 10.276 -44.663 1 4.96 ? C4N NAP 320 A 1 
HETATM 43 C C5N NAP . . . C 2 -30.958 11.167 -45.405 1 4.96 ? C5N NAP 320 A 1 
HETATM 44 C C6N NAP . . . C 2 -30.329 12.289 -45.853 1 4.96 ? C6N NAP 320 A 1 
HETATM 45 P P2B NAP . . . C 2 -35.024 20.534 -54.901 1 4.96 ? P2B NAP 320 A 1 
HETATM 46 O O1X NAP . . . C 2 -33.834 19.672 -54.776 1 4.96 ? O1X NAP 320 A 1 
HETATM 47 O O2X NAP . . . C 2 -35.926 20.2 -55.996 1 4.96 ? O2X NAP 320 A 1 
HETATM 48 O O3X NAP . . . C 2 -34.749 21.959 -54.823 1 4.96 ? O3X NAP 320 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#