data_1EF3 # _model_server_result.job_id OvrHaqTJJwpxKn6PUp71gQ _model_server_result.datetime_utc '2024-12-22 02:18:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ef3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":340}' # _entry.id 1EF3 # _exptl.entry_id 1EF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.224 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.6 _cell.angle_gamma 90 _cell.entry_id 1EF3 _cell.length_a 96.14 _cell.length_b 62.56 _cell.length_c 118.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C12 H10 F N3 O4' _chem_comp.formula_weight 279.224 _chem_comp.id FID _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FIDARESTAT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2I N4 FID sing 83 n n C2I N1I FID sing 84 n n C2I O3I FID doub 85 n n N4 C5 FID sing 86 n n N4 H4 FID sing 87 n n C5 C7I FID sing 88 n n C5 O6I FID doub 89 n n C7I C12 FID sing 90 n n C7I C8I FID sing 91 n n C7I N1I FID sing 92 n n C12 C13 FID doub 93 n y C12 C11 FID sing 94 n y C13 C14 FID sing 95 n y C13 H13 FID sing 96 n n C14 F17 FID sing 97 n n C14 C15 FID doub 98 n y C15 C16 FID sing 99 n y C15 H15 FID sing 100 n n C16 C11 FID doub 101 n y C16 H16 FID sing 102 n n C11 O10 FID sing 103 n n O10 C9 FID sing 104 n n C9 C19 FID sing 105 n n C9 C8I FID sing 106 n n C9 H9 FID sing 107 n n C19 N21 FID sing 108 n n C19 O20 FID doub 109 n n N21 H211 FID sing 110 n n N21 H212 FID sing 111 n n C8I H8I1 FID sing 112 n n C8I H8I2 FID sing 113 n n N1I H1I FID sing 114 n n # _atom_sites.entry_id 1EF3 _atom_sites.fract_transf_matrix[1][1] 0.0104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 320 320 NAP NAP . D 3 FID A 1 340 340 FID FID . E 2 NAP B 1 330 330 NAP NAP . F 3 FID B 1 350 350 FID FID . G 4 HOH A 1 401 401 HOH HOH . G 4 HOH A 2 403 403 HOH HOH . G 4 HOH A 3 404 404 HOH HOH . G 4 HOH A 4 405 405 HOH HOH . G 4 HOH A 5 406 406 HOH HOH . G 4 HOH A 6 414 414 HOH HOH . G 4 HOH A 7 415 415 HOH HOH . G 4 HOH A 8 416 416 HOH HOH . G 4 HOH A 9 419 419 HOH HOH . H 4 HOH B 1 402 402 HOH HOH . H 4 HOH B 2 407 407 HOH HOH . H 4 HOH B 3 408 408 HOH HOH . H 4 HOH B 4 409 409 HOH HOH . H 4 HOH B 5 410 410 HOH HOH . H 4 HOH B 6 411 411 HOH HOH . H 4 HOH B 7 412 412 HOH HOH . H 4 HOH B 8 413 413 HOH HOH . H 4 HOH B 9 417 417 HOH HOH . H 4 HOH B 10 418 418 HOH HOH . H 4 HOH B 11 420 420 HOH HOH . H 4 HOH B 12 421 421 HOH HOH . H 4 HOH B 13 422 422 HOH HOH . H 4 HOH B 14 423 423 HOH HOH . H 4 HOH B 15 424 424 HOH HOH . H 4 HOH B 16 425 425 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2I FID . . . D 3 -29.989 8.623 -47.112 1 4.96 ? C2I FID 340 A 1 HETATM 2 N N4 FID . . . D 3 -29.353 7.607 -46.567 1 4.96 ? N4 FID 340 A 1 HETATM 3 C C5 FID . . . D 3 -30.073 6.48 -46.612 1 4.96 ? C5 FID 340 A 1 HETATM 4 C C7I FID . . . D 3 -31.399 6.835 -47.3 1 4.96 ? C7I FID 340 A 1 HETATM 5 C C12 FID . . . D 3 -31.571 6.051 -48.564 1 4.96 ? C12 FID 340 A 1 HETATM 6 C C13 FID . . . D 3 -30.763 6.366 -49.659 1 4.96 ? C13 FID 340 A 1 HETATM 7 C C14 FID . . . D 3 -30.9 5.674 -50.836 1 4.96 ? C14 FID 340 A 1 HETATM 8 F F17 FID . . . D 3 -30.119 5.994 -51.862 1 4.96 ? F17 FID 340 A 1 HETATM 9 C C15 FID . . . D 3 -31.835 4.653 -50.98 1 4.96 ? C15 FID 340 A 1 HETATM 10 C C16 FID . . . D 3 -32.659 4.336 -49.891 1 4.96 ? C16 FID 340 A 1 HETATM 11 C C11 FID . . . D 3 -32.537 5.033 -48.685 1 4.96 ? C11 FID 340 A 1 HETATM 12 O O10 FID . . . D 3 -33.407 4.653 -47.673 1 4.96 ? O10 FID 340 A 1 HETATM 13 C C9 FID . . . D 3 -33.023 5.049 -46.36 1 4.96 ? C9 FID 340 A 1 HETATM 14 C C19 FID . . . D 3 -34.135 4.796 -45.31 1 4.96 ? C19 FID 340 A 1 HETATM 15 N N21 FID . . . D 3 -35.341 4.466 -45.744 1 4.96 ? N21 FID 340 A 1 HETATM 16 O O20 FID . . . D 3 -33.894 4.898 -44.121 1 4.96 ? O20 FID 340 A 1 HETATM 17 C C8I FID . . . D 3 -32.628 6.57 -46.374 1 4.96 ? C8I FID 340 A 1 HETATM 18 N N1I FID . . . D 3 -31.177 8.248 -47.553 1 4.96 ? N1I FID 340 A 1 HETATM 19 O O6I FID . . . D 3 -29.752 5.362 -46.194 1 4.96 ? O6I FID 340 A 1 HETATM 20 O O3I FID . . . D 3 -29.545 9.759 -47.208 1 4.96 ? O3I FID 340 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #