data_1EF9
#
_model_server_result.job_id            QkEGADY4eytzjAhZM1ICDw 
_model_server_result.datetime_utc      '2024-11-08 18:14:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ef9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":270}' 
#
_entry.id    1EF9 
#
_exptl.entry_id    1EF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              853.623 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-CARBOXYPROPYL-COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.2 
_cell.angle_gamma         90 
_cell.entry_id            1EF9 
_cell.length_a            85.7 
_cell.length_b            142.4 
_cell.length_c            89.7 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H42 N7 O18 P3 S' 
_chem_comp.formula_weight    853.623 
_chem_comp.id                2CP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-CARBOXYPROPYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 N9 2CP sing 1 n y 
C8 N7 2CP doub 2 n y 
C8 H8 2CP sing 3 n n 
N9 C4 2CP sing 4 n y 
N9 C1' 2CP sing 5 n n 
C4 C5 2CP sing 6 n y 
C4 N3 2CP doub 7 n y 
C5 N7 2CP sing 8 n y 
C5 C6 2CP doub 9 n y 
N3 C2 2CP sing 10 n y 
C2 N1 2CP doub 11 n y 
C2 H2 2CP sing 12 n n 
N1 C6 2CP sing 13 n y 
C6 N6 2CP sing 14 n n 
N6 H61 2CP sing 15 n n 
N6 H62 2CP sing 16 n n 
C1' C2' 2CP sing 17 n n 
C1' O4' 2CP sing 18 n n 
C1' H1' 2CP sing 19 n n 
C2' O2' 2CP sing 20 n n 
C2' C3' 2CP sing 21 n n 
C2' H2' 2CP sing 22 n n 
O2' "HO'2" 2CP sing 23 n n 
C3' O3' 2CP sing 24 n n 
C3' C4' 2CP sing 25 n n 
C3' H3' 2CP sing 26 n n 
O3' P3 2CP sing 27 n n 
C4' O4' 2CP sing 28 n n 
C4' C5' 2CP sing 29 n n 
C4' H4' 2CP sing 30 n n 
C5' O5' 2CP sing 31 n n 
C5' "H5'1" 2CP sing 32 n n 
C5' "H5'2" 2CP sing 33 n n 
O5' P1 2CP sing 34 n n 
P1 O11 2CP doub 35 n n 
P1 O12 2CP sing 36 n n 
P1 O6 2CP sing 37 n n 
O12 H12 2CP sing 38 n n 
O6 P2 2CP sing 39 n n 
P2 O21 2CP doub 40 n n 
P2 O22 2CP sing 41 n n 
P2 O7 2CP sing 42 n n 
O22 H22 2CP sing 43 n n 
O7 CPB 2CP sing 44 n n 
CPB CPA 2CP sing 45 n n 
CPB HB1 2CP sing 46 n n 
CPB HB2 2CP sing 47 n n 
CPA CP7 2CP sing 48 n n 
CPA CP9 2CP sing 49 n n 
CPA CP8 2CP sing 50 n n 
CP7 OP3 2CP sing 51 n n 
CP7 CP6 2CP sing 52 n n 
CP7 HP7 2CP sing 53 n n 
CP9 HP91 2CP sing 54 n n 
CP9 HP92 2CP sing 55 n n 
CP9 HP93 2CP sing 56 n n 
CP8 HP81 2CP sing 57 n n 
CP8 HP82 2CP sing 58 n n 
CP8 HP83 2CP sing 59 n n 
OP3 HOP3 2CP sing 60 n n 
CP6 OP2 2CP doub 61 n n 
CP6 NP2 2CP sing 62 n n 
NP2 CP5 2CP sing 63 n n 
NP2 HN2 2CP sing 64 n n 
CP5 CP4 2CP sing 65 n n 
CP5 HP51 2CP sing 66 n n 
CP5 HP52 2CP sing 67 n n 
CP4 CP3 2CP sing 68 n n 
CP4 HP41 2CP sing 69 n n 
CP4 HP42 2CP sing 70 n n 
CP3 OP1 2CP doub 71 n n 
CP3 NP1 2CP sing 72 n n 
NP1 CP2 2CP sing 73 n n 
NP1 HN1 2CP sing 74 n n 
CP2 CP1 2CP sing 75 n n 
CP2 HP21 2CP sing 76 n n 
CP2 HP22 2CP sing 77 n n 
CP1 S 2CP sing 78 n n 
CP1 HP11 2CP sing 79 n n 
CP1 HP12 2CP sing 80 n n 
P3 O31 2CP doub 81 n n 
P3 O32 2CP sing 82 n n 
P3 O33 2CP sing 83 n n 
O32 H32 2CP sing 84 n n 
O33 H33 2CP sing 85 n n 
S CS1 2CP sing 86 n n 
CS1 CS2 2CP sing 87 n n 
CS1 HS11 2CP sing 88 n n 
CS1 HS12 2CP sing 89 n n 
CS2 CS3 2CP sing 90 n n 
CS2 CS4 2CP sing 91 n n 
CS2 HS2 2CP sing 92 n n 
CS3 HS31 2CP sing 93 n n 
CS3 HS32 2CP sing 94 n n 
CS3 HS33 2CP sing 95 n n 
CS4 OS4 2CP doub 96 n n 
CS4 OS5 2CP sing 97 n n 
OS5 HOS5 2CP sing 98 n n 
#
_atom_sites.entry_id                     1EF9 
_atom_sites.fract_transf_matrix[1][1]    0.011669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004063 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007022 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011805 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           2CP 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      270 
_pdbx_nonpoly_scheme.auth_seq_num     270 
_pdbx_nonpoly_scheme.pdb_mon_id       2CP 
_pdbx_nonpoly_scheme.auth_mon_id      COA 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 2CP . . . B 2 -7.474 -31.02 43.006 1 1 ? C8 2CP 270 A 1 
HETATM 2 N N9 2CP . . . B 2 -8.238 -32.073 42.574 1 12.63 ? N9 2CP 270 A 1 
HETATM 3 C C4 2CP . . . B 2 -8.882 -31.603 41.404 1 1 ? C4 2CP 270 A 1 
HETATM 4 C C5 2CP . . . B 2 -8.483 -30.302 41.231 1 1 ? C5 2CP 270 A 1 
HETATM 5 N N7 2CP . . . B 2 -7.59 -29.95 42.237 1 14.06 ? N7 2CP 270 A 1 
HETATM 6 N N3 2CP . . . B 2 -9.772 -32.253 40.574 1 24.68 ? N3 2CP 270 A 1 
HETATM 7 C C2 2CP . . . B 2 -10.195 -31.476 39.589 1 100 ? C2 2CP 270 A 1 
HETATM 8 N N1 2CP . . . B 2 -9.895 -30.234 39.297 1 32.27 ? N1 2CP 270 A 1 
HETATM 9 C C6 2CP . . . B 2 -9.034 -29.584 40.105 1 34.57 ? C6 2CP 270 A 1 
HETATM 10 N N6 2CP . . . B 2 -8.74 -28.32 39.814 1 26.99 ? N6 2CP 270 A 1 
HETATM 11 C C1' 2CP . . . B 2 -8.427 -33.188 43.201 1 100 ? C1' 2CP 270 A 1 
HETATM 12 C C2' 2CP . . . B 2 -7.356 -34.273 43.099 1 16.38 ? C2' 2CP 270 A 1 
HETATM 13 O O2' 2CP . . . B 2 -7.402 -34.817 41.747 1 100 ? O2' 2CP 270 A 1 
HETATM 14 C C3' 2CP . . . B 2 -7.892 -35.297 44.075 1 100 ? C3' 2CP 270 A 1 
HETATM 15 O O3' 2CP . . . B 2 -8.836 -36.292 43.694 1 100 ? O3' 2CP 270 A 1 
HETATM 16 C C4' 2CP . . . B 2 -8.118 -34.323 45.289 1 15.72 ? C4' 2CP 270 A 1 
HETATM 17 O O4' 2CP . . . B 2 -8.491 -33.04 44.628 1 26.44 ? O4' 2CP 270 A 1 
HETATM 18 C C5' 2CP . . . B 2 -7.058 -34.161 46.282 1 91.17 ? C5' 2CP 270 A 1 
HETATM 19 O O5' 2CP . . . B 2 -5.981 -33.555 45.685 1 25.32 ? O5' 2CP 270 A 1 
HETATM 20 P P1 2CP . . . B 2 -4.755 -33.503 46.55 1 44.02 ? P1 2CP 270 A 1 
HETATM 21 O O11 2CP . . . B 2 -3.519 -33.223 45.65 1 100 ? O11 2CP 270 A 1 
HETATM 22 O O12 2CP . . . B 2 -4.616 -34.897 47.205 1 100 ? O12 2CP 270 A 1 
HETATM 23 O O6 2CP . . . B 2 -4.913 -32.447 47.673 1 98.2 ? O6 2CP 270 A 1 
HETATM 24 P P2 2CP . . . B 2 -3.823 -31.563 48.347 1 48.2 ? P2 2CP 270 A 1 
HETATM 25 O O21 2CP . . . B 2 -2.56 -32.4 48.635 1 100 ? O21 2CP 270 A 1 
HETATM 26 O O22 2CP . . . B 2 -4.334 -30.987 49.68 1 17.33 ? O22 2CP 270 A 1 
HETATM 27 O O7 2CP . . . B 2 -3.451 -30.374 47.406 1 100 ? O7 2CP 270 A 1 
HETATM 28 C CPB 2CP . . . B 2 -4.671 -29.642 47.21 1 2.06 ? CPB 2CP 270 A 1 
HETATM 29 C CPA 2CP . . . B 2 -4.564 -28.643 46.069 1 59.04 ? CPA 2CP 270 A 1 
HETATM 30 C CP7 2CP . . . B 2 -4.254 -29.514 44.844 1 30.49 ? CP7 2CP 270 A 1 
HETATM 31 C CP9 2CP . . . B 2 -3.406 -27.702 46.41 1 12.67 ? CP9 2CP 270 A 1 
HETATM 32 C CP8 2CP . . . B 2 -5.858 -27.817 45.866 1 11.47 ? CP8 2CP 270 A 1 
HETATM 33 O OP3 2CP . . . B 2 -5.369 -30.379 44.52 1 45.55 ? OP3 2CP 270 A 1 
HETATM 34 C CP6 2CP . . . B 2 -3.884 -28.774 43.589 1 66.09 ? CP6 2CP 270 A 1 
HETATM 35 O OP2 2CP . . . B 2 -2.831 -28.142 43.606 1 13.82 ? OP2 2CP 270 A 1 
HETATM 36 N NP2 2CP . . . B 2 -4.868 -28.713 42.549 1 67.91 ? NP2 2CP 270 A 1 
HETATM 37 C CP5 2CP . . . B 2 -4.412 -28.021 41.409 1 100 ? CP5 2CP 270 A 1 
HETATM 38 C CP4 2CP . . . B 2 -4.73 -26.537 41.509 1 25.07 ? CP4 2CP 270 A 1 
HETATM 39 C CP3 2CP . . . B 2 -4.656 -25.879 40.125 1 5 ? CP3 2CP 270 A 1 
HETATM 40 O OP1 2CP . . . B 2 -3.643 -25.415 39.625 1 94.36 ? OP1 2CP 270 A 1 
HETATM 41 N NP1 2CP . . . B 2 -5.916 -25.844 39.548 1 29.46 ? NP1 2CP 270 A 1 
HETATM 42 C CP2 2CP . . . B 2 -5.98 -25.235 38.306 1 19.45 ? CP2 2CP 270 A 1 
HETATM 43 C CP1 2CP . . . B 2 -6.743 -25.984 37.281 1 1 ? CP1 2CP 270 A 1 
HETATM 44 P P3 2CP . . . B 2 -8.449 -37.751 43.923 1 100 ? P3 2CP 270 A 1 
HETATM 45 O O31 2CP . . . B 2 -9.731 -38.488 44.308 1 100 ? O31 2CP 270 A 1 
HETATM 46 O O32 2CP . . . B 2 -7.892 -38.359 42.627 1 100 ? O32 2CP 270 A 1 
HETATM 47 O O33 2CP . . . B 2 -7.392 -37.826 45.054 1 43.08 ? O33 2CP 270 A 1 
HETATM 48 S S 2CP . . . B 2 -7.028 -25.65 35.703 1 65.86 ? S 2CP 270 A 1 
HETATM 49 C CS1 2CP . . . B 2 -5.806 -24.378 35.541 1 39.56 ? CS1 2CP 270 A 1 
HETATM 50 C CS2 2CP . . . B 2 -6.225 -22.981 35.865 1 34.93 ? CS2 2CP 270 A 1 
HETATM 51 C CS3 2CP . . . B 2 -5.459 -22.024 34.993 1 44.19 ? CS3 2CP 270 A 1 
HETATM 52 C CS4 2CP . . . B 2 -7.619 -22.529 35.854 1 62.69 ? CS4 2CP 270 A 1 
HETATM 53 O OS4 2CP . . . B 2 -8.213 -22.403 36.884 1 23.65 ? OS4 2CP 270 A 1 
HETATM 54 O OS5 2CP . . . B 2 -8.47 -22.393 34.625 1 31.3 ? OS5 2CP 270 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           54 
#