data_1EFH
#
_model_server_result.job_id            38BAKPsvphdHM1PZI-RN-w 
_model_server_result.datetime_utc      '2024-11-23 00:05:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1efh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    1EFH 
#
_exptl.entry_id    1EFH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3'-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EFH 
_cell.length_a            73.19 
_cell.length_b            96.82 
_cell.length_c            127.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EFH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                A3P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-3'-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1P A3P doub 1 n n 
P1 O2P A3P sing 2 n n 
P1 O3P A3P sing 3 n n 
P1 O3' A3P sing 4 n n 
O2P HOP2 A3P sing 5 n n 
O3P HOP3 A3P sing 6 n n 
P2 O4P A3P doub 7 n n 
P2 O5P A3P sing 8 n n 
P2 O6P A3P sing 9 n n 
P2 O5' A3P sing 10 n n 
O5P HOP5 A3P sing 11 n n 
O6P HOP6 A3P sing 12 n n 
O5' C5' A3P sing 13 n n 
C5' C4' A3P sing 14 n n 
C5' "H5'1" A3P sing 15 n n 
C5' "H5'2" A3P sing 16 n n 
C4' O4' A3P sing 17 n n 
C4' C3' A3P sing 18 n n 
C4' H4' A3P sing 19 n n 
O4' C1' A3P sing 20 n n 
C3' O3' A3P sing 21 n n 
C3' C2' A3P sing 22 n n 
C3' H3' A3P sing 23 n n 
C2' O2' A3P sing 24 n n 
C2' C1' A3P sing 25 n n 
C2' H2' A3P sing 26 n n 
O2' HO2' A3P sing 27 n n 
C1' N9 A3P sing 28 n n 
C1' H1' A3P sing 29 n n 
N9 C8 A3P sing 30 n y 
N9 C4 A3P sing 31 n y 
C8 N7 A3P doub 32 n y 
C8 H8 A3P sing 33 n n 
N7 C5 A3P sing 34 n y 
C5 C6 A3P sing 35 n y 
C5 C4 A3P doub 36 n y 
C6 N6 A3P sing 37 n n 
C6 N1 A3P doub 38 n y 
N6 HN61 A3P sing 39 n n 
N6 HN62 A3P sing 40 n n 
N1 C2 A3P sing 41 n y 
C2 N3 A3P doub 42 n y 
C2 H2 A3P sing 43 n n 
N3 C4 A3P sing 44 n y 
#
_atom_sites.entry_id                     1EFH 
_atom_sites.fract_transf_matrix[1][1]    0.013663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A3P A 1 303 302 A3P PAP . 
D 2 A3P B 1 302 302 A3P PAP . 
E 3 HOH A 1 304 3 HOH H2O . 
E 3 HOH A 2 305 6 HOH H2O . 
E 3 HOH A 3 306 8 HOH H2O . 
E 3 HOH A 4 307 13 HOH H2O . 
E 3 HOH A 5 308 14 HOH H2O . 
E 3 HOH A 6 309 19 HOH H2O . 
E 3 HOH A 7 310 21 HOH H2O . 
E 3 HOH A 8 311 22 HOH H2O . 
E 3 HOH A 9 312 25 HOH H2O . 
E 3 HOH A 10 313 26 HOH H2O . 
E 3 HOH A 11 314 27 HOH H2O . 
E 3 HOH A 12 315 28 HOH H2O . 
E 3 HOH A 13 316 30 HOH H2O . 
E 3 HOH A 14 317 32 HOH H2O . 
E 3 HOH A 15 318 34 HOH H2O . 
E 3 HOH A 16 319 35 HOH H2O . 
E 3 HOH A 17 320 36 HOH H2O . 
E 3 HOH A 18 321 39 HOH H2O . 
E 3 HOH A 19 322 48 HOH H2O . 
E 3 HOH A 20 323 51 HOH H2O . 
E 3 HOH A 21 324 53 HOH H2O . 
E 3 HOH A 22 325 56 HOH H2O . 
E 3 HOH A 23 326 59 HOH H2O . 
E 3 HOH A 24 327 62 HOH H2O . 
E 3 HOH A 25 328 65 HOH H2O . 
E 3 HOH A 26 329 68 HOH H2O . 
E 3 HOH A 27 330 69 HOH H2O . 
E 3 HOH A 28 331 72 HOH H2O . 
E 3 HOH A 29 332 78 HOH H2O . 
E 3 HOH A 30 333 79 HOH H2O . 
E 3 HOH A 31 334 80 HOH H2O . 
E 3 HOH A 32 335 81 HOH H2O . 
E 3 HOH A 33 336 82 HOH H2O . 
E 3 HOH A 34 337 83 HOH H2O . 
E 3 HOH A 35 338 84 HOH H2O . 
E 3 HOH A 36 339 85 HOH H2O . 
E 3 HOH A 37 340 86 HOH H2O . 
E 3 HOH A 38 341 87 HOH H2O . 
E 3 HOH A 39 342 88 HOH H2O . 
E 3 HOH A 40 343 89 HOH H2O . 
E 3 HOH A 41 344 90 HOH H2O . 
E 3 HOH A 42 345 91 HOH H2O . 
E 3 HOH A 43 346 92 HOH H2O . 
E 3 HOH A 44 347 93 HOH H2O . 
E 3 HOH A 45 348 94 HOH H2O . 
E 3 HOH A 46 349 95 HOH H2O . 
E 3 HOH A 47 350 96 HOH H2O . 
E 3 HOH A 48 351 97 HOH H2O . 
E 3 HOH A 49 352 98 HOH H2O . 
E 3 HOH A 50 353 99 HOH H2O . 
E 3 HOH A 51 354 100 HOH H2O . 
E 3 HOH A 52 355 101 HOH H2O . 
E 3 HOH A 53 356 102 HOH H2O . 
E 3 HOH A 54 357 103 HOH H2O . 
E 3 HOH A 55 358 104 HOH H2O . 
E 3 HOH A 56 359 105 HOH H2O . 
E 3 HOH A 57 360 106 HOH H2O . 
E 3 HOH A 58 361 107 HOH H2O . 
E 3 HOH A 59 362 108 HOH H2O . 
E 3 HOH A 60 363 109 HOH H2O . 
E 3 HOH A 61 364 110 HOH H2O . 
E 3 HOH A 62 365 111 HOH H2O . 
E 3 HOH A 63 366 112 HOH H2O . 
E 3 HOH A 64 367 130 HOH H2O . 
E 3 HOH A 65 368 131 HOH H2O . 
E 3 HOH A 66 369 132 HOH H2O . 
E 3 HOH A 67 370 133 HOH H2O . 
E 3 HOH A 68 371 134 HOH H2O . 
E 3 HOH A 69 372 135 HOH H2O . 
E 3 HOH A 70 373 136 HOH H2O . 
E 3 HOH A 71 374 137 HOH H2O . 
E 3 HOH A 72 375 138 HOH H2O . 
E 3 HOH A 73 376 139 HOH H2O . 
E 3 HOH A 74 377 140 HOH H2O . 
E 3 HOH A 75 378 141 HOH H2O . 
E 3 HOH A 76 379 142 HOH H2O . 
E 3 HOH A 77 380 143 HOH H2O . 
E 3 HOH A 78 381 144 HOH H2O . 
E 3 HOH A 79 382 145 HOH H2O . 
E 3 HOH A 80 383 146 HOH H2O . 
E 3 HOH A 81 384 147 HOH H2O . 
E 3 HOH A 82 385 148 HOH H2O . 
E 3 HOH A 83 386 149 HOH H2O . 
E 3 HOH A 84 387 150 HOH H2O . 
E 3 HOH A 85 388 151 HOH H2O . 
E 3 HOH A 86 389 152 HOH H2O . 
E 3 HOH A 87 390 153 HOH H2O . 
E 3 HOH A 88 391 156 HOH H2O . 
E 3 HOH A 89 392 174 HOH H2O . 
E 3 HOH A 90 393 177 HOH H2O . 
E 3 HOH A 91 394 178 HOH H2O . 
E 3 HOH A 92 395 179 HOH H2O . 
E 3 HOH A 93 396 180 HOH H2O . 
F 3 HOH B 1 303 1 HOH H2O . 
F 3 HOH B 2 304 2 HOH H2O . 
F 3 HOH B 3 305 4 HOH H2O . 
F 3 HOH B 4 306 5 HOH H2O . 
F 3 HOH B 5 307 7 HOH H2O . 
F 3 HOH B 6 308 9 HOH H2O . 
F 3 HOH B 7 309 10 HOH H2O . 
F 3 HOH B 8 310 11 HOH H2O . 
F 3 HOH B 9 311 12 HOH H2O . 
F 3 HOH B 10 312 15 HOH H2O . 
F 3 HOH B 11 313 16 HOH H2O . 
F 3 HOH B 12 314 17 HOH H2O . 
F 3 HOH B 13 315 18 HOH H2O . 
F 3 HOH B 14 316 20 HOH H2O . 
F 3 HOH B 15 317 23 HOH H2O . 
F 3 HOH B 16 318 24 HOH H2O . 
F 3 HOH B 17 319 29 HOH H2O . 
F 3 HOH B 18 320 31 HOH H2O . 
F 3 HOH B 19 321 33 HOH H2O . 
F 3 HOH B 20 322 37 HOH H2O . 
F 3 HOH B 21 323 38 HOH H2O . 
F 3 HOH B 22 324 40 HOH H2O . 
F 3 HOH B 23 325 41 HOH H2O . 
F 3 HOH B 24 326 42 HOH H2O . 
F 3 HOH B 25 327 43 HOH H2O . 
F 3 HOH B 26 328 44 HOH H2O . 
F 3 HOH B 27 329 45 HOH H2O . 
F 3 HOH B 28 330 46 HOH H2O . 
F 3 HOH B 29 331 47 HOH H2O . 
F 3 HOH B 30 332 49 HOH H2O . 
F 3 HOH B 31 333 50 HOH H2O . 
F 3 HOH B 32 334 52 HOH H2O . 
F 3 HOH B 33 335 54 HOH H2O . 
F 3 HOH B 34 336 55 HOH H2O . 
F 3 HOH B 35 337 57 HOH H2O . 
F 3 HOH B 36 338 58 HOH H2O . 
F 3 HOH B 37 339 60 HOH H2O . 
F 3 HOH B 38 340 61 HOH H2O . 
F 3 HOH B 39 341 63 HOH H2O . 
F 3 HOH B 40 342 64 HOH H2O . 
F 3 HOH B 41 343 66 HOH H2O . 
F 3 HOH B 42 344 67 HOH H2O . 
F 3 HOH B 43 345 70 HOH H2O . 
F 3 HOH B 44 346 71 HOH H2O . 
F 3 HOH B 45 347 73 HOH H2O . 
F 3 HOH B 46 348 74 HOH H2O . 
F 3 HOH B 47 349 75 HOH H2O . 
F 3 HOH B 48 350 76 HOH H2O . 
F 3 HOH B 49 351 77 HOH H2O . 
F 3 HOH B 50 352 113 HOH H2O . 
F 3 HOH B 51 353 114 HOH H2O . 
F 3 HOH B 52 354 115 HOH H2O . 
F 3 HOH B 53 355 116 HOH H2O . 
F 3 HOH B 54 356 117 HOH H2O . 
F 3 HOH B 55 357 118 HOH H2O . 
F 3 HOH B 56 358 119 HOH H2O . 
F 3 HOH B 57 359 120 HOH H2O . 
F 3 HOH B 58 360 121 HOH H2O . 
F 3 HOH B 59 361 122 HOH H2O . 
F 3 HOH B 60 362 123 HOH H2O . 
F 3 HOH B 61 363 124 HOH H2O . 
F 3 HOH B 62 364 125 HOH H2O . 
F 3 HOH B 63 365 126 HOH H2O . 
F 3 HOH B 64 366 127 HOH H2O . 
F 3 HOH B 65 367 128 HOH H2O . 
F 3 HOH B 66 368 129 HOH H2O . 
F 3 HOH B 67 369 154 HOH H2O . 
F 3 HOH B 68 370 155 HOH H2O . 
F 3 HOH B 69 371 157 HOH H2O . 
F 3 HOH B 70 372 158 HOH H2O . 
F 3 HOH B 71 373 159 HOH H2O . 
F 3 HOH B 72 374 160 HOH H2O . 
F 3 HOH B 73 375 161 HOH H2O . 
F 3 HOH B 74 376 162 HOH H2O . 
F 3 HOH B 75 377 163 HOH H2O . 
F 3 HOH B 76 378 164 HOH H2O . 
F 3 HOH B 77 379 165 HOH H2O . 
F 3 HOH B 78 380 166 HOH H2O . 
F 3 HOH B 79 381 167 HOH H2O . 
F 3 HOH B 80 382 168 HOH H2O . 
F 3 HOH B 81 383 169 HOH H2O . 
F 3 HOH B 82 384 170 HOH H2O . 
F 3 HOH B 83 385 171 HOH H2O . 
F 3 HOH B 84 386 172 HOH H2O . 
F 3 HOH B 85 387 173 HOH H2O . 
F 3 HOH B 86 388 175 HOH H2O . 
F 3 HOH B 87 389 176 HOH H2O . 
F 3 HOH B 88 390 181 HOH H2O . 
F 3 HOH B 89 391 182 HOH H2O . 
F 3 HOH B 90 392 183 HOH H2O . 
F 3 HOH B 91 393 184 HOH H2O . 
F 3 HOH B 92 394 185 HOH H2O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 A3P . . . D 2 24.692 63.171 76.934 1 21.75 ? P1 A3P 302 B 1 
HETATM 2 O O1P A3P . . . D 2 25.094 61.814 77.347 1 23.47 ? O1P A3P 302 B 1 
HETATM 3 O O2P A3P . . . D 2 23.325 63.156 76.386 1 26.03 ? O2P A3P 302 B 1 
HETATM 4 O O3P A3P . . . D 2 24.818 64.134 78.026 1 20.35 ? O3P A3P 302 B 1 
HETATM 5 P P2 A3P . . . D 2 30.529 62.075 72.195 1 26.86 ? P2 A3P 302 B 1 
HETATM 6 O O4P A3P . . . D 2 30.621 60.701 72.732 1 26.47 ? O4P A3P 302 B 1 
HETATM 7 O O5P A3P . . . D 2 30.095 62.061 70.783 1 26.69 ? O5P A3P 302 B 1 
HETATM 8 O O6P A3P . . . D 2 31.81 62.794 72.329 1 25.61 ? O6P A3P 302 B 1 
HETATM 9 O O5' A3P . . . D 2 29.436 62.849 73.051 1 27.16 ? O5' A3P 302 B 1 
HETATM 10 C C5' A3P . . . D 2 28.155 62.281 73.365 1 27.03 ? C5' A3P 302 B 1 
HETATM 11 C C4' A3P . . . D 2 27.256 63.359 73.987 1 23.68 ? C4' A3P 302 B 1 
HETATM 12 O O4' A3P . . . D 2 26.819 64.276 72.931 1 22.01 ? O4' A3P 302 B 1 
HETATM 13 C C3' A3P . . . D 2 25.974 62.831 74.62 1 23.26 ? C3' A3P 302 B 1 
HETATM 14 O O3' A3P . . . D 2 25.665 63.636 75.765 1 22.91 ? O3' A3P 302 B 1 
HETATM 15 C C2' A3P . . . D 2 24.993 62.964 73.468 1 23.16 ? C2' A3P 302 B 1 
HETATM 16 O O2' A3P . . . D 2 23.617 62.938 73.775 1 24.27 ? O2' A3P 302 B 1 
HETATM 17 C C1' A3P . . . D 2 25.408 64.321 72.917 1 22.6 ? C1' A3P 302 B 1 
HETATM 18 N N9 A3P . . . D 2 24.865 64.554 71.579 1 22.77 ? N9 A3P 302 B 1 
HETATM 19 C C8 A3P . . . D 2 24.961 63.782 70.451 1 20.81 ? C8 A3P 302 B 1 
HETATM 20 N N7 A3P . . . D 2 24.343 64.269 69.405 1 21.65 ? N7 A3P 302 B 1 
HETATM 21 C C5 A3P . . . D 2 23.801 65.448 69.87 1 22.46 ? C5 A3P 302 B 1 
HETATM 22 C C6 A3P . . . D 2 23.008 66.465 69.26 1 22.11 ? C6 A3P 302 B 1 
HETATM 23 N N6 A3P . . . D 2 22.611 66.438 67.983 1 23.66 ? N6 A3P 302 B 1 
HETATM 24 N N1 A3P . . . D 2 22.636 67.528 70.03 1 23.29 ? N1 A3P 302 B 1 
HETATM 25 C C2 A3P . . . D 2 23.013 67.593 71.327 1 23.83 ? C2 A3P 302 B 1 
HETATM 26 N N3 A3P . . . D 2 23.754 66.698 72.016 1 25.7 ? N3 A3P 302 B 1 
HETATM 27 C C4 A3P . . . D 2 24.118 65.643 71.223 1 23.81 ? C4 A3P 302 B 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#