data_1EGH # _model_server_result.job_id QDl8FpOb2L1WMQDbr9bKiA _model_server_result.datetime_utc '2024-11-21 22:29:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1egh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":251}' # _entry.id 1EGH # _exptl.entry_id 1EGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EGH _cell.length_a 53.12 _cell.length_b 129.87 _cell.length_c 178.55 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 237 n n P O2P PGA doub 238 n n P O3P PGA sing 239 n n P O4P PGA sing 240 n n O1P C2 PGA sing 241 n n O3P HOP3 PGA sing 242 n n O4P HOP4 PGA sing 243 n n C2 C1 PGA sing 244 n n C2 H21 PGA sing 245 n n C2 H22 PGA sing 246 n n C1 O1 PGA doub 247 n n C1 O2 PGA sing 248 n n O2 HO2 PGA sing 249 n n # _atom_sites.entry_id 1EGH _atom_sites.fract_transf_matrix[1][1] 0.018825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PGA A 1 201 201 PGA PGA . H 2 PGA B 1 211 201 PGA PGA . I 2 PGA C 1 221 201 PGA PGA . J 2 PGA D 1 231 201 PGA PGA . K 2 PGA E 1 241 201 PGA PGA . L 2 PGA F 1 251 201 PGA PGA . M 3 HOH A 1 301 301 HOH HOH . M 3 HOH A 2 303 303 HOH HOH . M 3 HOH A 3 304 304 HOH HOH . M 3 HOH A 4 305 305 HOH HOH . M 3 HOH A 5 306 306 HOH HOH . M 3 HOH A 6 307 307 HOH HOH . M 3 HOH A 7 308 308 HOH HOH . M 3 HOH A 8 311 311 HOH HOH . M 3 HOH A 9 313 313 HOH HOH . M 3 HOH A 10 337 337 HOH HOH . M 3 HOH A 11 369 369 HOH HOH . M 3 HOH A 12 381 381 HOH HOH . M 3 HOH A 13 384 384 HOH HOH . M 3 HOH A 14 411 411 HOH HOH . M 3 HOH A 15 417 417 HOH HOH . M 3 HOH A 16 418 418 HOH HOH . M 3 HOH A 17 419 419 HOH HOH . M 3 HOH A 18 420 420 HOH HOH . M 3 HOH A 19 422 422 HOH HOH . M 3 HOH A 20 427 427 HOH HOH . M 3 HOH A 21 434 434 HOH HOH . M 3 HOH A 22 437 437 HOH HOH . M 3 HOH A 23 439 439 HOH HOH . M 3 HOH A 24 451 451 HOH HOH . M 3 HOH A 25 459 459 HOH HOH . M 3 HOH A 26 478 478 HOH HOH . M 3 HOH A 27 482 482 HOH HOH . M 3 HOH A 28 487 487 HOH HOH . M 3 HOH A 29 492 492 HOH HOH . M 3 HOH A 30 497 497 HOH HOH . M 3 HOH A 31 506 506 HOH HOH . M 3 HOH A 32 525 525 HOH HOH . M 3 HOH A 33 526 526 HOH HOH . M 3 HOH A 34 534 534 HOH HOH . M 3 HOH A 35 540 540 HOH HOH . M 3 HOH A 36 542 542 HOH HOH . M 3 HOH A 37 545 545 HOH HOH . M 3 HOH A 38 552 552 HOH HOH . M 3 HOH A 39 564 564 HOH HOH . M 3 HOH A 40 565 565 HOH HOH . M 3 HOH A 41 571 571 HOH HOH . M 3 HOH A 42 577 577 HOH HOH . M 3 HOH A 43 579 579 HOH HOH . M 3 HOH A 44 585 585 HOH HOH . M 3 HOH A 45 597 597 HOH HOH . M 3 HOH A 46 598 598 HOH HOH . N 3 HOH B 1 309 309 HOH HOH . N 3 HOH B 2 315 315 HOH HOH . N 3 HOH B 3 317 317 HOH HOH . N 3 HOH B 4 318 318 HOH HOH . N 3 HOH B 5 319 319 HOH HOH . N 3 HOH B 6 320 320 HOH HOH . N 3 HOH B 7 321 321 HOH HOH . N 3 HOH B 8 322 322 HOH HOH . N 3 HOH B 9 323 323 HOH HOH . N 3 HOH B 10 325 325 HOH HOH . N 3 HOH B 11 327 327 HOH HOH . N 3 HOH B 12 343 343 HOH HOH . N 3 HOH B 13 367 367 HOH HOH . N 3 HOH B 14 383 383 HOH HOH . N 3 HOH B 15 391 391 HOH HOH . N 3 HOH B 16 395 395 HOH HOH . N 3 HOH B 17 396 396 HOH HOH . N 3 HOH B 18 403 403 HOH HOH . N 3 HOH B 19 407 407 HOH HOH . N 3 HOH B 20 409 409 HOH HOH . N 3 HOH B 21 414 414 HOH HOH . N 3 HOH B 22 415 415 HOH HOH . N 3 HOH B 23 429 429 HOH HOH . N 3 HOH B 24 442 442 HOH HOH . N 3 HOH B 25 446 446 HOH HOH . N 3 HOH B 26 448 448 HOH HOH . N 3 HOH B 27 463 463 HOH HOH . N 3 HOH B 28 467 467 HOH HOH . N 3 HOH B 29 468 468 HOH HOH . N 3 HOH B 30 476 476 HOH HOH . N 3 HOH B 31 477 477 HOH HOH . N 3 HOH B 32 483 483 HOH HOH . N 3 HOH B 33 484 484 HOH HOH . N 3 HOH B 34 488 488 HOH HOH . N 3 HOH B 35 494 494 HOH HOH . N 3 HOH B 36 495 495 HOH HOH . N 3 HOH B 37 496 496 HOH HOH . N 3 HOH B 38 499 499 HOH HOH . N 3 HOH B 39 502 502 HOH HOH . N 3 HOH B 40 503 503 HOH HOH . N 3 HOH B 41 507 507 HOH HOH . N 3 HOH B 42 509 509 HOH HOH . N 3 HOH B 43 510 510 HOH HOH . N 3 HOH B 44 514 514 HOH HOH . N 3 HOH B 45 527 527 HOH HOH . N 3 HOH B 46 528 528 HOH HOH . N 3 HOH B 47 535 535 HOH HOH . N 3 HOH B 48 541 541 HOH HOH . N 3 HOH B 49 553 553 HOH HOH . N 3 HOH B 50 559 559 HOH HOH . N 3 HOH B 51 568 568 HOH HOH . N 3 HOH B 52 574 574 HOH HOH . N 3 HOH B 53 575 575 HOH HOH . N 3 HOH B 54 590 590 HOH HOH . N 3 HOH B 55 591 591 HOH HOH . N 3 HOH B 56 596 596 HOH HOH . O 3 HOH C 1 314 314 HOH HOH . O 3 HOH C 2 329 329 HOH HOH . O 3 HOH C 3 331 331 HOH HOH . O 3 HOH C 4 332 332 HOH HOH . O 3 HOH C 5 333 333 HOH HOH . O 3 HOH C 6 334 334 HOH HOH . O 3 HOH C 7 335 335 HOH HOH . O 3 HOH C 8 336 336 HOH HOH . O 3 HOH C 9 338 338 HOH HOH . O 3 HOH C 10 340 340 HOH HOH . O 3 HOH C 11 353 353 HOH HOH . O 3 HOH C 12 357 357 HOH HOH . O 3 HOH C 13 371 371 HOH HOH . O 3 HOH C 14 390 390 HOH HOH . O 3 HOH C 15 392 392 HOH HOH . O 3 HOH C 16 394 394 HOH HOH . O 3 HOH C 17 398 398 HOH HOH . O 3 HOH C 18 402 402 HOH HOH . O 3 HOH C 19 410 410 HOH HOH . O 3 HOH C 20 412 412 HOH HOH . O 3 HOH C 21 423 423 HOH HOH . O 3 HOH C 22 425 425 HOH HOH . O 3 HOH C 23 428 428 HOH HOH . O 3 HOH C 24 431 431 HOH HOH . O 3 HOH C 25 440 440 HOH HOH . O 3 HOH C 26 444 444 HOH HOH . O 3 HOH C 27 450 450 HOH HOH . O 3 HOH C 28 454 454 HOH HOH . O 3 HOH C 29 460 460 HOH HOH . O 3 HOH C 30 466 466 HOH HOH . O 3 HOH C 31 474 474 HOH HOH . O 3 HOH C 32 481 481 HOH HOH . O 3 HOH C 33 490 490 HOH HOH . O 3 HOH C 34 504 504 HOH HOH . O 3 HOH C 35 511 511 HOH HOH . O 3 HOH C 36 515 515 HOH HOH . O 3 HOH C 37 516 516 HOH HOH . O 3 HOH C 38 517 517 HOH HOH . O 3 HOH C 39 518 518 HOH HOH . O 3 HOH C 40 522 522 HOH HOH . O 3 HOH C 41 523 523 HOH HOH . O 3 HOH C 42 524 524 HOH HOH . O 3 HOH C 43 536 536 HOH HOH . O 3 HOH C 44 548 548 HOH HOH . O 3 HOH C 45 557 557 HOH HOH . O 3 HOH C 46 562 562 HOH HOH . O 3 HOH C 47 582 582 HOH HOH . O 3 HOH C 48 588 588 HOH HOH . P 3 HOH D 1 328 328 HOH HOH . P 3 HOH D 2 339 339 HOH HOH . P 3 HOH D 3 342 342 HOH HOH . P 3 HOH D 4 344 344 HOH HOH . P 3 HOH D 5 345 345 HOH HOH . P 3 HOH D 6 346 346 HOH HOH . P 3 HOH D 7 347 347 HOH HOH . P 3 HOH D 8 348 348 HOH HOH . P 3 HOH D 9 349 349 HOH HOH . P 3 HOH D 10 350 350 HOH HOH . P 3 HOH D 11 352 352 HOH HOH . P 3 HOH D 12 354 354 HOH HOH . P 3 HOH D 13 365 365 HOH HOH . P 3 HOH D 14 379 379 HOH HOH . P 3 HOH D 15 386 386 HOH HOH . P 3 HOH D 16 399 399 HOH HOH . P 3 HOH D 17 404 404 HOH HOH . P 3 HOH D 18 408 408 HOH HOH . P 3 HOH D 19 416 416 HOH HOH . P 3 HOH D 20 421 421 HOH HOH . P 3 HOH D 21 426 426 HOH HOH . P 3 HOH D 22 430 430 HOH HOH . P 3 HOH D 23 435 435 HOH HOH . P 3 HOH D 24 436 436 HOH HOH . P 3 HOH D 25 438 438 HOH HOH . P 3 HOH D 26 443 443 HOH HOH . P 3 HOH D 27 458 458 HOH HOH . P 3 HOH D 28 462 462 HOH HOH . P 3 HOH D 29 464 464 HOH HOH . P 3 HOH D 30 465 465 HOH HOH . P 3 HOH D 31 470 470 HOH HOH . P 3 HOH D 32 498 498 HOH HOH . P 3 HOH D 33 501 501 HOH HOH . P 3 HOH D 34 512 512 HOH HOH . P 3 HOH D 35 513 513 HOH HOH . P 3 HOH D 36 519 519 HOH HOH . P 3 HOH D 37 520 520 HOH HOH . P 3 HOH D 38 521 521 HOH HOH . P 3 HOH D 39 530 530 HOH HOH . P 3 HOH D 40 532 532 HOH HOH . P 3 HOH D 41 533 533 HOH HOH . P 3 HOH D 42 537 537 HOH HOH . P 3 HOH D 43 544 544 HOH HOH . P 3 HOH D 44 547 547 HOH HOH . P 3 HOH D 45 551 551 HOH HOH . P 3 HOH D 46 556 556 HOH HOH . P 3 HOH D 47 561 561 HOH HOH . P 3 HOH D 48 563 563 HOH HOH . P 3 HOH D 49 570 570 HOH HOH . P 3 HOH D 50 572 572 HOH HOH . P 3 HOH D 51 580 580 HOH HOH . P 3 HOH D 52 584 584 HOH HOH . P 3 HOH D 53 586 586 HOH HOH . P 3 HOH D 54 595 595 HOH HOH . P 3 HOH D 55 599 599 HOH HOH . Q 3 HOH E 1 302 302 HOH HOH . Q 3 HOH E 2 310 310 HOH HOH . Q 3 HOH E 3 326 326 HOH HOH . Q 3 HOH E 4 341 341 HOH HOH . Q 3 HOH E 5 351 351 HOH HOH . Q 3 HOH E 6 356 356 HOH HOH . Q 3 HOH E 7 358 358 HOH HOH . Q 3 HOH E 8 359 359 HOH HOH . Q 3 HOH E 9 360 360 HOH HOH . Q 3 HOH E 10 361 361 HOH HOH . Q 3 HOH E 11 362 362 HOH HOH . Q 3 HOH E 12 363 363 HOH HOH . Q 3 HOH E 13 364 364 HOH HOH . Q 3 HOH E 14 366 366 HOH HOH . Q 3 HOH E 15 368 368 HOH HOH . Q 3 HOH E 16 387 387 HOH HOH . Q 3 HOH E 17 388 388 HOH HOH . Q 3 HOH E 18 401 401 HOH HOH . Q 3 HOH E 19 413 413 HOH HOH . Q 3 HOH E 20 433 433 HOH HOH . Q 3 HOH E 21 441 441 HOH HOH . Q 3 HOH E 22 445 445 HOH HOH . Q 3 HOH E 23 447 447 HOH HOH . Q 3 HOH E 24 449 449 HOH HOH . Q 3 HOH E 25 455 455 HOH HOH . Q 3 HOH E 26 456 456 HOH HOH . Q 3 HOH E 27 469 469 HOH HOH . Q 3 HOH E 28 472 472 HOH HOH . Q 3 HOH E 29 473 473 HOH HOH . Q 3 HOH E 30 475 475 HOH HOH . Q 3 HOH E 31 480 480 HOH HOH . Q 3 HOH E 32 486 486 HOH HOH . Q 3 HOH E 33 491 491 HOH HOH . Q 3 HOH E 34 493 493 HOH HOH . Q 3 HOH E 35 505 505 HOH HOH . Q 3 HOH E 36 529 529 HOH HOH . Q 3 HOH E 37 531 531 HOH HOH . Q 3 HOH E 38 538 538 HOH HOH . Q 3 HOH E 39 550 550 HOH HOH . Q 3 HOH E 40 555 555 HOH HOH . Q 3 HOH E 41 558 558 HOH HOH . Q 3 HOH E 42 566 566 HOH HOH . Q 3 HOH E 43 576 576 HOH HOH . Q 3 HOH E 44 578 578 HOH HOH . Q 3 HOH E 45 581 581 HOH HOH . Q 3 HOH E 46 587 587 HOH HOH . Q 3 HOH E 47 589 589 HOH HOH . Q 3 HOH E 48 594 594 HOH HOH . R 3 HOH F 1 312 312 HOH HOH . R 3 HOH F 2 316 316 HOH HOH . R 3 HOH F 3 324 324 HOH HOH . R 3 HOH F 4 330 330 HOH HOH . R 3 HOH F 5 355 355 HOH HOH . R 3 HOH F 6 370 370 HOH HOH . R 3 HOH F 7 372 372 HOH HOH . R 3 HOH F 8 373 373 HOH HOH . R 3 HOH F 9 374 374 HOH HOH . R 3 HOH F 10 375 375 HOH HOH . R 3 HOH F 11 376 376 HOH HOH . R 3 HOH F 12 377 377 HOH HOH . R 3 HOH F 13 378 378 HOH HOH . R 3 HOH F 14 380 380 HOH HOH . R 3 HOH F 15 382 382 HOH HOH . R 3 HOH F 16 385 385 HOH HOH . R 3 HOH F 17 389 389 HOH HOH . R 3 HOH F 18 393 393 HOH HOH . R 3 HOH F 19 397 397 HOH HOH . R 3 HOH F 20 400 400 HOH HOH . R 3 HOH F 21 405 405 HOH HOH . R 3 HOH F 22 406 406 HOH HOH . R 3 HOH F 23 424 424 HOH HOH . R 3 HOH F 24 432 432 HOH HOH . R 3 HOH F 25 452 452 HOH HOH . R 3 HOH F 26 453 453 HOH HOH . R 3 HOH F 27 457 457 HOH HOH . R 3 HOH F 28 461 461 HOH HOH . R 3 HOH F 29 471 471 HOH HOH . R 3 HOH F 30 479 479 HOH HOH . R 3 HOH F 31 485 485 HOH HOH . R 3 HOH F 32 489 489 HOH HOH . R 3 HOH F 33 500 500 HOH HOH . R 3 HOH F 34 508 508 HOH HOH . R 3 HOH F 35 539 539 HOH HOH . R 3 HOH F 36 543 543 HOH HOH . R 3 HOH F 37 546 546 HOH HOH . R 3 HOH F 38 549 549 HOH HOH . R 3 HOH F 39 554 554 HOH HOH . R 3 HOH F 40 560 560 HOH HOH . R 3 HOH F 41 567 567 HOH HOH . R 3 HOH F 42 569 569 HOH HOH . R 3 HOH F 43 573 573 HOH HOH . R 3 HOH F 44 583 583 HOH HOH . R 3 HOH F 45 592 592 HOH HOH . R 3 HOH F 46 593 593 HOH HOH . R 3 HOH F 47 600 600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . L 2 110.456 -16.239 55.165 1 30.2 ? P PGA 251 F 1 HETATM 2 O O1P PGA . . . L 2 108.883 -16.534 55.368 1 23.96 ? O1P PGA 251 F 1 HETATM 3 O O2P PGA . . . L 2 110.441 -15.048 54.3 1 33.4 ? O2P PGA 251 F 1 HETATM 4 O O3P PGA . . . L 2 110.946 -16.052 56.582 1 26.5 ? O3P PGA 251 F 1 HETATM 5 O O4P PGA . . . L 2 111.032 -17.425 54.503 1 32.17 ? O4P PGA 251 F 1 HETATM 6 C C2 PGA . . . L 2 108.071 -16.761 54.229 1 27.8 ? C2 PGA 251 F 1 HETATM 7 C C1 PGA . . . L 2 106.917 -17.706 54.522 1 30.73 ? C1 PGA 251 F 1 HETATM 8 O O1 PGA . . . L 2 107.184 -18.823 55.015 1 33.11 ? O1 PGA 251 F 1 HETATM 9 O O2 PGA . . . L 2 105.737 -17.339 54.254 1 31.91 ? O2 PGA 251 F 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #