data_1EGJ
#
_model_server_result.job_id            Qv3Sjyy9e1JfhFsrhSM0Kw 
_model_server_result.datetime_utc      '2024-11-29 13:17:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1egj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    1EGJ 
#
_exptl.entry_id    1EGJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EGJ 
_cell.length_a            77.61 
_cell.length_b            77.61 
_cell.length_c            296.25 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EGJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 23 L CYS 23 1_555 B SG CYS 92 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 B SG CYS 138 L CYS 134 1_555 B SG CYS 198 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 C SG CYS 146 H CYS 140 1_555 C SG CYS 201 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 B ND2 ASN 26 L ASN 26 1_555 D C1 NAG . L NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1EGJ 
_atom_sites.fract_transf_matrix[1][1]    0.012885 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG L 1 501 1 NAG NAG . 
E 5 HOH A 1 6 6 HOH WAT . 
E 5 HOH A 2 9 9 HOH WAT . 
E 5 HOH A 3 10 10 HOH WAT . 
E 5 HOH A 4 15 15 HOH WAT . 
E 5 HOH A 5 16 16 HOH WAT . 
E 5 HOH A 6 18 18 HOH WAT . 
E 5 HOH A 7 19 19 HOH WAT . 
E 5 HOH A 8 25 25 HOH WAT . 
E 5 HOH A 9 49 49 HOH WAT . 
E 5 HOH A 10 51 51 HOH WAT . 
E 5 HOH A 11 57 57 HOH WAT . 
E 5 HOH A 12 66 66 HOH WAT . 
E 5 HOH A 13 85 85 HOH WAT . 
E 5 HOH A 14 90 90 HOH WAT . 
E 5 HOH A 15 93 93 HOH WAT . 
E 5 HOH A 16 94 94 HOH WAT . 
E 5 HOH A 17 101 101 HOH WAT . 
E 5 HOH A 18 114 114 HOH WAT . 
E 5 HOH A 19 115 115 HOH WAT . 
E 5 HOH A 20 117 117 HOH WAT . 
E 5 HOH A 21 118 118 HOH WAT . 
E 5 HOH A 22 124 124 HOH WAT . 
E 5 HOH A 23 126 126 HOH WAT . 
E 5 HOH A 24 129 129 HOH WAT . 
E 5 HOH A 25 137 137 HOH WAT . 
E 5 HOH A 26 140 140 HOH WAT . 
E 5 HOH A 27 151 151 HOH WAT . 
E 5 HOH A 28 152 152 HOH WAT . 
E 5 HOH A 29 162 162 HOH WAT . 
E 5 HOH A 30 173 173 HOH WAT . 
E 5 HOH A 31 174 174 HOH WAT . 
F 5 HOH L 1 502 1 HOH WAT . 
F 5 HOH L 2 503 21 HOH WAT . 
F 5 HOH L 3 504 22 HOH WAT . 
F 5 HOH L 4 505 23 HOH WAT . 
F 5 HOH L 5 506 26 HOH WAT . 
F 5 HOH L 6 507 29 HOH WAT . 
F 5 HOH L 7 508 36 HOH WAT . 
F 5 HOH L 8 509 38 HOH WAT . 
F 5 HOH L 9 510 39 HOH WAT . 
F 5 HOH L 10 511 40 HOH WAT . 
F 5 HOH L 11 512 41 HOH WAT . 
F 5 HOH L 12 513 42 HOH WAT . 
F 5 HOH L 13 514 44 HOH WAT . 
F 5 HOH L 14 515 47 HOH WAT . 
F 5 HOH L 15 516 53 HOH WAT . 
F 5 HOH L 16 517 55 HOH WAT . 
F 5 HOH L 17 518 64 HOH WAT . 
F 5 HOH L 18 519 68 HOH WAT . 
F 5 HOH L 19 520 84 HOH WAT . 
F 5 HOH L 20 521 95 HOH WAT . 
F 5 HOH L 21 522 102 HOH WAT . 
F 5 HOH L 22 523 105 HOH WAT . 
F 5 HOH L 23 524 106 HOH WAT . 
F 5 HOH L 24 525 111 HOH WAT . 
F 5 HOH L 25 526 112 HOH WAT . 
F 5 HOH L 26 527 113 HOH WAT . 
F 5 HOH L 27 528 121 HOH WAT . 
F 5 HOH L 28 529 122 HOH WAT . 
F 5 HOH L 29 530 125 HOH WAT . 
F 5 HOH L 30 531 127 HOH WAT . 
F 5 HOH L 31 532 133 HOH WAT . 
F 5 HOH L 32 533 134 HOH WAT . 
F 5 HOH L 33 534 139 HOH WAT . 
F 5 HOH L 34 535 141 HOH WAT . 
F 5 HOH L 35 536 144 HOH WAT . 
F 5 HOH L 36 537 147 HOH WAT . 
F 5 HOH L 37 538 150 HOH WAT . 
F 5 HOH L 38 539 157 HOH WAT . 
F 5 HOH L 39 540 158 HOH WAT . 
F 5 HOH L 40 541 159 HOH WAT . 
F 5 HOH L 41 542 163 HOH WAT . 
F 5 HOH L 42 543 164 HOH WAT . 
F 5 HOH L 43 544 166 HOH WAT . 
F 5 HOH L 44 545 168 HOH WAT . 
F 5 HOH L 45 546 171 HOH WAT . 
F 5 HOH L 46 547 172 HOH WAT . 
G 5 HOH H 1 226 2 HOH WAT . 
G 5 HOH H 2 227 3 HOH WAT . 
G 5 HOH H 3 228 4 HOH WAT . 
G 5 HOH H 4 229 5 HOH WAT . 
G 5 HOH H 5 230 7 HOH WAT . 
G 5 HOH H 6 231 8 HOH WAT . 
G 5 HOH H 7 232 11 HOH WAT . 
G 5 HOH H 8 233 12 HOH WAT . 
G 5 HOH H 9 234 13 HOH WAT . 
G 5 HOH H 10 235 14 HOH WAT . 
G 5 HOH H 11 236 17 HOH WAT . 
G 5 HOH H 12 237 20 HOH WAT . 
G 5 HOH H 13 238 24 HOH WAT . 
G 5 HOH H 14 239 27 HOH WAT . 
G 5 HOH H 15 240 28 HOH WAT . 
G 5 HOH H 16 241 30 HOH WAT . 
G 5 HOH H 17 242 31 HOH WAT . 
G 5 HOH H 18 243 33 HOH WAT . 
G 5 HOH H 19 244 35 HOH WAT . 
G 5 HOH H 20 245 37 HOH WAT . 
G 5 HOH H 21 246 43 HOH WAT . 
G 5 HOH H 22 247 48 HOH WAT . 
G 5 HOH H 23 248 50 HOH WAT . 
G 5 HOH H 24 249 59 HOH WAT . 
G 5 HOH H 25 250 62 HOH WAT . 
G 5 HOH H 26 251 65 HOH WAT . 
G 5 HOH H 27 252 72 HOH WAT . 
G 5 HOH H 28 253 73 HOH WAT . 
G 5 HOH H 29 254 77 HOH WAT . 
G 5 HOH H 30 255 78 HOH WAT . 
G 5 HOH H 31 256 83 HOH WAT . 
G 5 HOH H 32 257 86 HOH WAT . 
G 5 HOH H 33 258 92 HOH WAT . 
G 5 HOH H 34 259 96 HOH WAT . 
G 5 HOH H 35 260 103 HOH WAT . 
G 5 HOH H 36 261 104 HOH WAT . 
G 5 HOH H 37 262 107 HOH WAT . 
G 5 HOH H 38 263 109 HOH WAT . 
G 5 HOH H 39 264 110 HOH WAT . 
G 5 HOH H 40 265 116 HOH WAT . 
G 5 HOH H 41 266 119 HOH WAT . 
G 5 HOH H 42 267 120 HOH WAT . 
G 5 HOH H 43 268 123 HOH WAT . 
G 5 HOH H 44 269 128 HOH WAT . 
G 5 HOH H 45 270 130 HOH WAT . 
G 5 HOH H 46 271 131 HOH WAT . 
G 5 HOH H 47 272 132 HOH WAT . 
G 5 HOH H 48 273 135 HOH WAT . 
G 5 HOH H 49 274 136 HOH WAT . 
G 5 HOH H 50 275 138 HOH WAT . 
G 5 HOH H 51 276 142 HOH WAT . 
G 5 HOH H 52 277 143 HOH WAT . 
G 5 HOH H 53 278 145 HOH WAT . 
G 5 HOH H 54 279 146 HOH WAT . 
G 5 HOH H 55 280 148 HOH WAT . 
G 5 HOH H 56 281 149 HOH WAT . 
G 5 HOH H 57 282 153 HOH WAT . 
G 5 HOH H 58 283 154 HOH WAT . 
G 5 HOH H 59 284 155 HOH WAT . 
G 5 HOH H 60 285 156 HOH WAT . 
G 5 HOH H 61 286 160 HOH WAT . 
G 5 HOH H 62 287 161 HOH WAT . 
G 5 HOH H 63 288 165 HOH WAT . 
G 5 HOH H 64 289 167 HOH WAT . 
G 5 HOH H 65 290 169 HOH WAT . 
G 5 HOH H 66 291 170 HOH WAT . 
G 5 HOH H 67 292 175 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 73.367 66.81 52.734 1 85.77 ? C1 NAG 501 L 1 
HETATM 2 C C2 NAG . . . D 4 73.734 68.138 52.039 1 87.48 ? C2 NAG 501 L 1 
HETATM 3 C C3 NAG . . . D 4 72.972 69.267 52.743 1 89.81 ? C3 NAG 501 L 1 
HETATM 4 C C4 NAG . . . D 4 71.498 69.02 53.189 1 89.64 ? C4 NAG 501 L 1 
HETATM 5 C C5 NAG . . . D 4 71.466 67.666 53.858 1 89.55 ? C5 NAG 501 L 1 
HETATM 6 C C6 NAG . . . D 4 70.31 67.013 54.566 1 88.81 ? C6 NAG 501 L 1 
HETATM 7 C C7 NAG . . . D 4 75.715 69.545 51.764 1 87.62 ? C7 NAG 501 L 1 
HETATM 8 C C8 NAG . . . D 4 77.216 69.759 51.964 1 83.59 ? C8 NAG 501 L 1 
HETATM 9 N N2 NAG . . . D 4 75.176 68.363 52.16 1 89.11 ? N2 NAG 501 L 1 
HETATM 10 O O3 NAG . . . D 4 73.082 70.443 52.021 1 86.68 ? O3 NAG 501 L 1 
HETATM 11 O O4 NAG . . . D 4 71.132 70.014 54.159 1 93.62 ? O4 NAG 501 L 1 
HETATM 12 O O5 NAG . . . D 4 71.967 66.73 52.97 1 85.57 ? O5 NAG 501 L 1 
HETATM 13 O O6 NAG . . . D 4 70.693 65.803 55.245 1 86.82 ? O6 NAG 501 L 1 
HETATM 14 O O7 NAG . . . D 4 75.066 70.437 51.259 1 86.61 ? O7 NAG 501 L 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#