data_1EH5
#
_model_server_result.job_id            SVtF1cARuhu7d1jZFmUR6Q 
_model_server_result.datetime_utc      '2024-12-01 18:52:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1eh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":410}' 
#
_entry.id    1EH5 
#
_exptl.entry_id    1EH5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EH5 
_cell.length_a            67.52 
_cell.length_b            67.52 
_cell.length_c            128.92 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG ? 420 NAG 
2 n B NAG 2 B 2 NAG ? 421 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 45 1_555 A SG CYS 19 A CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 A SG CYS 69 A CYS 96 1_555 A SG CYS 101 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 125 A CYS 152 1_555 A SG CYS 133 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A OG SER 88 A SER 115 1_555 E C1 PLM . A PLM 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.284 ? 
covale ? covale2 A ND2 ASN 170 A ASN 197 1_555 C C1 NAG . A NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale3 A ND2 ASN 185 A ASN 212 1_555 D C1 NAG . A NAG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale4 A ND2 ASN 205 A ASN 232 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1EH5 
_atom_sites.fract_transf_matrix[1][1]    0.01481 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 400 400 NAG NAG . 
D 3 NAG A 1 410 410 NAG NAG . 
E 4 PLM A 1 430 430 PLM PLM . 
F 5 HOH A 1 500 500 HOH WAT . 
F 5 HOH A 2 501 501 HOH WAT . 
F 5 HOH A 3 502 502 HOH WAT . 
F 5 HOH A 4 503 503 HOH WAT . 
F 5 HOH A 5 504 504 HOH WAT . 
F 5 HOH A 6 505 505 HOH WAT . 
F 5 HOH A 7 506 506 HOH WAT . 
F 5 HOH A 8 507 507 HOH WAT . 
F 5 HOH A 9 508 508 HOH WAT . 
F 5 HOH A 10 509 509 HOH WAT . 
F 5 HOH A 11 510 510 HOH WAT . 
F 5 HOH A 12 511 511 HOH WAT . 
F 5 HOH A 13 512 512 HOH WAT . 
F 5 HOH A 14 513 513 HOH WAT . 
F 5 HOH A 15 514 514 HOH WAT . 
F 5 HOH A 16 515 515 HOH WAT . 
F 5 HOH A 17 516 516 HOH WAT . 
F 5 HOH A 18 517 517 HOH WAT . 
F 5 HOH A 19 518 518 HOH WAT . 
F 5 HOH A 20 519 519 HOH WAT . 
F 5 HOH A 21 520 520 HOH WAT . 
F 5 HOH A 22 521 521 HOH WAT . 
F 5 HOH A 23 522 522 HOH WAT . 
F 5 HOH A 24 523 523 HOH WAT . 
F 5 HOH A 25 524 524 HOH WAT . 
F 5 HOH A 26 525 525 HOH WAT . 
F 5 HOH A 27 526 526 HOH WAT . 
F 5 HOH A 28 527 527 HOH WAT . 
F 5 HOH A 29 528 528 HOH WAT . 
F 5 HOH A 30 529 529 HOH WAT . 
F 5 HOH A 31 530 530 HOH WAT . 
F 5 HOH A 32 531 531 HOH WAT . 
F 5 HOH A 33 532 532 HOH WAT . 
F 5 HOH A 34 533 533 HOH WAT . 
F 5 HOH A 35 534 534 HOH WAT . 
F 5 HOH A 36 535 535 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 45.388 5.37 33.318 1 64.6 ? C1 NAG 410 A 1 
HETATM 2 C C2 NAG . . . D 3 43.857 5.301 33.095 1 67.5 ? C2 NAG 410 A 1 
HETATM 3 C C3 NAG . . . D 3 43.492 4.005 32.349 1 68.83 ? C3 NAG 410 A 1 
HETATM 4 C C4 NAG . . . D 3 44.186 3.996 30.977 1 69.54 ? C4 NAG 410 A 1 
HETATM 5 C C5 NAG . . . D 3 45.674 4.381 31.103 1 69.62 ? C5 NAG 410 A 1 
HETATM 6 C C6 NAG . . . D 3 45.998 5.74 30.494 1 70.51 ? C6 NAG 410 A 1 
HETATM 7 C C7 NAG . . . D 3 42.085 6.159 34.502 1 66.88 ? C7 NAG 410 A 1 
HETATM 8 C C8 NAG . . . D 3 40.744 5.47 34.717 1 66.49 ? C8 NAG 410 A 1 
HETATM 9 N N2 NAG . . . D 3 43.155 5.38 34.367 1 67.63 ? N2 NAG 410 A 1 
HETATM 10 O O3 NAG . . . D 3 42.082 3.913 32.183 1 70.13 ? O3 NAG 410 A 1 
HETATM 11 O O4 NAG . . . D 3 44.069 2.713 30.373 1 69.61 ? O4 NAG 410 A 1 
HETATM 12 O O5 NAG . . . D 3 46.09 4.399 32.502 1 68.65 ? O5 NAG 410 A 1 
HETATM 13 O O6 NAG . . . D 3 47.347 5.802 30.052 1 71.85 ? O6 NAG 410 A 1 
HETATM 14 O O7 NAG . . . D 3 42.144 7.388 34.459 1 66.35 ? O7 NAG 410 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           700 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#