data_1EHI # _model_server_result.job_id 46ie6c7LbFCWRHCrvf3k9g _model_server_result.datetime_utc '2024-11-06 02:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ehi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":782}' # _entry.id 1EHI # _exptl.entry_id 1EHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.1 _cell.angle_gamma 90 _cell.entry_id 1EHI _cell.length_a 118.2 _cell.length_b 90.8 _cell.length_c 82.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 316 A GLU 316 1_555 C MG MG . A MG 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A OE2 GLU 316 A GLU 316 1_555 C MG MG . A MG 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc3 A OE2 GLU 316 A GLU 316 1_555 D MG MG . A MG 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 A OD1 ASN 318 A ASN 318 1_555 C MG MG . A MG 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc5 E O3B ADP . A ADP 781 1_555 C MG MG . A MG 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 E O2B ADP . A ADP 781 1_555 D MG MG . A MG 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc7 E O2A ADP . A ADP 781 1_555 D MG MG . A MG 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc8 F O5P PHY . A PHY 782 1_555 C MG MG . A MG 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 F O4P PHY . A PHY 782 1_555 D MG MG . A MG 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C6 H15 N O7 P2' _chem_comp.formula_weight 275.133 _chem_comp.id PHY _chem_comp.mon_nstd_flag . _chem_comp.name '1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PHY sing 291 n n C1 N1 PHY sing 292 n n C1 P1 PHY sing 293 n n C1 H1 PHY sing 294 n n C2 H21 PHY sing 295 n n C2 H22 PHY sing 296 n n C2 H23 PHY sing 297 n n C1' C2' PHY sing 298 n n C1' P1 PHY sing 299 n n C1' "H1'1" PHY sing 300 n n C1' "H1'2" PHY sing 301 n n C2' C3' PHY sing 302 n n C2' C PHY sing 303 n n C2' H2' PHY sing 304 n n C3' "H3'1" PHY sing 305 n n C3' "H3'2" PHY sing 306 n n C3' "H3'3" PHY sing 307 n n C O1 PHY doub 308 n n C O2 PHY sing 309 n n O2 HO2 PHY sing 310 n n N1 HN11 PHY sing 311 n n N1 HN12 PHY sing 312 n n P1 O1P PHY doub 313 n n P1 O2P PHY sing 314 n n O2P P2 PHY sing 315 n n P2 O3P PHY doub 316 n n P2 O4P PHY sing 317 n n P2 O5P PHY sing 318 n n O4P HO4P PHY sing 319 n n O5P HO5P PHY sing 320 n n # _atom_sites.entry_id 1EHI _atom_sites.fract_transf_matrix[1][1] 0.00846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 783 783 MG MG . D 2 MG A 1 784 784 MG MG . E 3 ADP A 1 781 781 ADP ADP . F 4 PHY A 1 782 782 PHY PHY . G 5 HOH A 1 801 801 HOH WAT . G 5 HOH A 2 803 803 HOH WAT . G 5 HOH A 3 804 804 HOH WAT . G 5 HOH A 4 807 807 HOH WAT . G 5 HOH A 5 809 809 HOH WAT . G 5 HOH A 6 810 810 HOH WAT . G 5 HOH A 7 811 811 HOH WAT . G 5 HOH A 8 812 812 HOH WAT . G 5 HOH A 9 815 815 HOH WAT . G 5 HOH A 10 817 817 HOH WAT . G 5 HOH A 11 818 818 HOH WAT . G 5 HOH A 12 819 819 HOH WAT . G 5 HOH A 13 824 824 HOH WAT . G 5 HOH A 14 825 825 HOH WAT . G 5 HOH A 15 826 826 HOH WAT . G 5 HOH A 16 827 827 HOH WAT . G 5 HOH A 17 828 828 HOH WAT . G 5 HOH A 18 829 829 HOH WAT . G 5 HOH A 19 832 832 HOH WAT . G 5 HOH A 20 833 833 HOH WAT . G 5 HOH A 21 834 834 HOH WAT . G 5 HOH A 22 835 835 HOH WAT . G 5 HOH A 23 837 837 HOH WAT . G 5 HOH A 24 838 838 HOH WAT . G 5 HOH A 25 840 840 HOH WAT . G 5 HOH A 26 841 841 HOH WAT . G 5 HOH A 27 842 842 HOH WAT . G 5 HOH A 28 843 843 HOH WAT . G 5 HOH A 29 844 844 HOH WAT . G 5 HOH A 30 846 846 HOH WAT . G 5 HOH A 31 847 847 HOH WAT . G 5 HOH A 32 848 848 HOH WAT . G 5 HOH A 33 849 849 HOH WAT . G 5 HOH A 34 850 850 HOH WAT . G 5 HOH A 35 852 852 HOH WAT . G 5 HOH A 36 853 853 HOH WAT . G 5 HOH A 37 854 854 HOH WAT . G 5 HOH A 38 855 855 HOH WAT . G 5 HOH A 39 858 858 HOH WAT . G 5 HOH A 40 859 859 HOH WAT . G 5 HOH A 41 861 861 HOH WAT . G 5 HOH A 42 862 862 HOH WAT . G 5 HOH A 43 863 863 HOH WAT . G 5 HOH A 44 864 864 HOH WAT . G 5 HOH A 45 866 866 HOH WAT . G 5 HOH A 46 867 867 HOH WAT . G 5 HOH A 47 868 868 HOH WAT . G 5 HOH A 48 870 870 HOH WAT . G 5 HOH A 49 873 873 HOH WAT . G 5 HOH A 50 876 876 HOH WAT . G 5 HOH A 51 877 877 HOH WAT . G 5 HOH A 52 878 878 HOH WAT . G 5 HOH A 53 882 882 HOH WAT . G 5 HOH A 54 884 884 HOH WAT . G 5 HOH A 55 886 886 HOH WAT . G 5 HOH A 56 888 888 HOH WAT . G 5 HOH A 57 889 889 HOH WAT . G 5 HOH A 58 894 894 HOH WAT . G 5 HOH A 59 895 895 HOH WAT . G 5 HOH A 60 896 896 HOH WAT . G 5 HOH A 61 897 897 HOH WAT . G 5 HOH A 62 900 900 HOH WAT . G 5 HOH A 63 903 903 HOH WAT . G 5 HOH A 64 904 904 HOH WAT . G 5 HOH A 65 908 908 HOH WAT . G 5 HOH A 66 909 909 HOH WAT . G 5 HOH A 67 910 910 HOH WAT . G 5 HOH A 68 911 911 HOH WAT . G 5 HOH A 69 915 915 HOH WAT . G 5 HOH A 70 916 916 HOH WAT . G 5 HOH A 71 917 917 HOH WAT . G 5 HOH A 72 920 920 HOH WAT . G 5 HOH A 73 923 923 HOH WAT . G 5 HOH A 74 924 924 HOH WAT . G 5 HOH A 75 925 925 HOH WAT . G 5 HOH A 76 926 926 HOH WAT . G 5 HOH A 77 927 927 HOH WAT . G 5 HOH A 78 928 928 HOH WAT . G 5 HOH A 79 930 930 HOH WAT . G 5 HOH A 80 932 932 HOH WAT . G 5 HOH A 81 933 933 HOH WAT . G 5 HOH A 82 935 935 HOH WAT . G 5 HOH A 83 936 936 HOH WAT . G 5 HOH A 84 937 937 HOH WAT . G 5 HOH A 85 938 938 HOH WAT . G 5 HOH A 86 939 939 HOH WAT . G 5 HOH A 87 942 942 HOH WAT . G 5 HOH A 88 944 944 HOH WAT . G 5 HOH A 89 951 951 HOH WAT . G 5 HOH A 90 953 953 HOH WAT . G 5 HOH A 91 954 954 HOH WAT . G 5 HOH A 92 959 959 HOH WAT . G 5 HOH A 93 962 962 HOH WAT . G 5 HOH A 94 964 964 HOH WAT . G 5 HOH A 95 967 967 HOH WAT . G 5 HOH A 96 968 968 HOH WAT . G 5 HOH A 97 969 969 HOH WAT . G 5 HOH A 98 970 970 HOH WAT . G 5 HOH A 99 971 971 HOH WAT . G 5 HOH A 100 973 973 HOH WAT . G 5 HOH A 101 974 974 HOH WAT . G 5 HOH A 102 975 975 HOH WAT . G 5 HOH A 103 977 977 HOH WAT . G 5 HOH A 104 978 978 HOH WAT . G 5 HOH A 105 980 980 HOH WAT . G 5 HOH A 106 981 981 HOH WAT . G 5 HOH A 107 982 982 HOH WAT . G 5 HOH A 108 983 983 HOH WAT . G 5 HOH A 109 984 984 HOH WAT . G 5 HOH A 110 986 986 HOH WAT . G 5 HOH A 111 987 987 HOH WAT . G 5 HOH A 112 989 989 HOH WAT . G 5 HOH A 113 991 991 HOH WAT . G 5 HOH A 114 993 993 HOH WAT . G 5 HOH A 115 997 997 HOH WAT . G 5 HOH A 116 1001 1001 HOH WAT . G 5 HOH A 117 1002 1002 HOH WAT . G 5 HOH A 118 1003 1003 HOH WAT . G 5 HOH A 119 1005 1005 HOH WAT . G 5 HOH A 120 1008 1008 HOH WAT . G 5 HOH A 121 1009 1009 HOH WAT . G 5 HOH A 122 1010 1010 HOH WAT . H 5 HOH B 1 802 802 HOH WAT . H 5 HOH B 2 805 805 HOH WAT . H 5 HOH B 3 806 806 HOH WAT . H 5 HOH B 4 808 808 HOH WAT . H 5 HOH B 5 813 813 HOH WAT . H 5 HOH B 6 814 814 HOH WAT . H 5 HOH B 7 816 816 HOH WAT . H 5 HOH B 8 820 820 HOH WAT . H 5 HOH B 9 821 821 HOH WAT . H 5 HOH B 10 822 822 HOH WAT . H 5 HOH B 11 823 823 HOH WAT . H 5 HOH B 12 830 830 HOH WAT . H 5 HOH B 13 831 831 HOH WAT . H 5 HOH B 14 836 836 HOH WAT . H 5 HOH B 15 839 839 HOH WAT . H 5 HOH B 16 845 845 HOH WAT . H 5 HOH B 17 851 851 HOH WAT . H 5 HOH B 18 856 856 HOH WAT . H 5 HOH B 19 857 857 HOH WAT . H 5 HOH B 20 860 860 HOH WAT . H 5 HOH B 21 865 865 HOH WAT . H 5 HOH B 22 869 869 HOH WAT . H 5 HOH B 23 871 871 HOH WAT . H 5 HOH B 24 872 872 HOH WAT . H 5 HOH B 25 874 874 HOH WAT . H 5 HOH B 26 875 875 HOH WAT . H 5 HOH B 27 879 879 HOH WAT . H 5 HOH B 28 880 880 HOH WAT . H 5 HOH B 29 881 881 HOH WAT . H 5 HOH B 30 883 883 HOH WAT . H 5 HOH B 31 885 885 HOH WAT . H 5 HOH B 32 887 887 HOH WAT . H 5 HOH B 33 890 890 HOH WAT . H 5 HOH B 34 891 891 HOH WAT . H 5 HOH B 35 892 892 HOH WAT . H 5 HOH B 36 893 893 HOH WAT . H 5 HOH B 37 898 898 HOH WAT . H 5 HOH B 38 899 899 HOH WAT . H 5 HOH B 39 901 901 HOH WAT . H 5 HOH B 40 902 902 HOH WAT . H 5 HOH B 41 905 905 HOH WAT . H 5 HOH B 42 906 906 HOH WAT . H 5 HOH B 43 907 907 HOH WAT . H 5 HOH B 44 912 912 HOH WAT . H 5 HOH B 45 913 913 HOH WAT . H 5 HOH B 46 914 914 HOH WAT . H 5 HOH B 47 918 918 HOH WAT . H 5 HOH B 48 919 919 HOH WAT . H 5 HOH B 49 921 921 HOH WAT . H 5 HOH B 50 922 922 HOH WAT . H 5 HOH B 51 929 929 HOH WAT . H 5 HOH B 52 931 931 HOH WAT . H 5 HOH B 53 934 934 HOH WAT . H 5 HOH B 54 940 940 HOH WAT . H 5 HOH B 55 941 941 HOH WAT . H 5 HOH B 56 943 943 HOH WAT . H 5 HOH B 57 945 945 HOH WAT . H 5 HOH B 58 946 946 HOH WAT . H 5 HOH B 59 947 947 HOH WAT . H 5 HOH B 60 948 948 HOH WAT . H 5 HOH B 61 949 949 HOH WAT . H 5 HOH B 62 950 950 HOH WAT . H 5 HOH B 63 952 952 HOH WAT . H 5 HOH B 64 955 955 HOH WAT . H 5 HOH B 65 956 956 HOH WAT . H 5 HOH B 66 957 957 HOH WAT . H 5 HOH B 67 958 958 HOH WAT . H 5 HOH B 68 960 960 HOH WAT . H 5 HOH B 69 961 961 HOH WAT . H 5 HOH B 70 963 963 HOH WAT . H 5 HOH B 71 965 965 HOH WAT . H 5 HOH B 72 966 966 HOH WAT . H 5 HOH B 73 972 972 HOH WAT . H 5 HOH B 74 976 976 HOH WAT . H 5 HOH B 75 979 979 HOH WAT . H 5 HOH B 76 985 985 HOH WAT . H 5 HOH B 77 988 988 HOH WAT . H 5 HOH B 78 990 990 HOH WAT . H 5 HOH B 79 992 992 HOH WAT . H 5 HOH B 80 994 994 HOH WAT . H 5 HOH B 81 995 995 HOH WAT . H 5 HOH B 82 996 996 HOH WAT . H 5 HOH B 83 998 998 HOH WAT . H 5 HOH B 84 999 999 HOH WAT . H 5 HOH B 85 1000 1000 HOH WAT . H 5 HOH B 86 1004 1004 HOH WAT . H 5 HOH B 87 1006 1006 HOH WAT . H 5 HOH B 88 1007 1007 HOH WAT . H 5 HOH B 89 1011 1011 HOH WAT . H 5 HOH B 90 1012 1012 HOH WAT . H 5 HOH B 91 1013 1013 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PHY . . . F 4 36.206 10.895 51.509 1 61.27 ? C1 PHY 782 A 1 HETATM 2 C C2 PHY . . . F 4 35.299 10.695 50.501 1 48.57 ? C2 PHY 782 A 1 HETATM 3 C C1' PHY . . . F 4 38.061 12.201 50.153 1 53.7 ? C1' PHY 782 A 1 HETATM 4 C C2' PHY . . . F 4 39.226 12.26 49.172 1 46.28 ? C2' PHY 782 A 1 HETATM 5 C C3' PHY . . . F 4 39.663 13.693 48.904 1 52.09 ? C3' PHY 782 A 1 HETATM 6 C C PHY . . . F 4 38.907 11.498 47.871 1 39.41 ? C PHY 782 A 1 HETATM 7 O O1 PHY . . . F 4 39.746 10.698 47.512 1 34.4 ? O1 PHY 782 A 1 HETATM 8 O O2 PHY . . . F 4 37.751 11.504 47.454 1 38.42 ? O2 PHY 782 A 1 HETATM 9 N N1 PHY . . . F 4 35.936 10.01 52.506 1 53.07 ? N1 PHY 782 A 1 HETATM 10 P P1 PHY . . . F 4 37.686 10.99 51.016 1 66.07 ? P1 PHY 782 A 1 HETATM 11 O O1P PHY . . . F 4 37.976 9.71 50.286 1 64.94 ? O1P PHY 782 A 1 HETATM 12 O O2P PHY . . . F 4 38.699 10.82 52.174 1 67.22 ? O2P PHY 782 A 1 HETATM 13 P P2 PHY . . . F 4 38.932 11.471 53.548 1 66.48 ? P2 PHY 782 A 1 HETATM 14 O O3P PHY . . . F 4 38.336 12.823 53.286 1 68.4 ? O3P PHY 782 A 1 HETATM 15 O O4P PHY . . . F 4 40.321 11.615 54.028 1 66.42 ? O4P PHY 782 A 1 HETATM 16 O O5P PHY . . . F 4 38.038 10.743 54.456 1 68.09 ? O5P PHY 782 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #