data_1EI9 # _model_server_result.job_id SC4putT3qd-l0ymyYD8ZIA _model_server_result.datetime_utc '2024-10-24 04:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ei9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":410}' # _entry.id 1EI9 # _exptl.entry_id 1EI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EI9 _cell.length_a 69.35 _cell.length_b 69.35 _cell.length_c 128.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 420 NAG 2 n B NAG 2 B 2 NAG ? 421 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 45 1_555 A SG CYS 19 A CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 69 A CYS 96 1_555 A SG CYS 101 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 125 A CYS 152 1_555 A SG CYS 133 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 170 A ASN 197 1_555 C C1 NAG . A NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 185 A ASN 212 1_555 D C1 NAG . A NAG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A ND2 ASN 205 A ASN 232 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1EI9 _atom_sites.fract_transf_matrix[1][1] 0.01442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 400 400 NAG NAG . D 3 NAG A 1 410 410 NAG NAG . E 4 HOH A 1 500 500 HOH WAT . E 4 HOH A 2 501 501 HOH WAT . E 4 HOH A 3 502 502 HOH WAT . E 4 HOH A 4 503 503 HOH WAT . E 4 HOH A 5 504 504 HOH WAT . E 4 HOH A 6 505 505 HOH WAT . E 4 HOH A 7 506 506 HOH WAT . E 4 HOH A 8 507 507 HOH WAT . E 4 HOH A 9 508 508 HOH WAT . E 4 HOH A 10 509 509 HOH WAT . E 4 HOH A 11 510 510 HOH WAT . E 4 HOH A 12 512 512 HOH WAT . E 4 HOH A 13 513 513 HOH WAT . E 4 HOH A 14 514 514 HOH WAT . E 4 HOH A 15 515 515 HOH WAT . E 4 HOH A 16 517 517 HOH WAT . E 4 HOH A 17 518 518 HOH WAT . E 4 HOH A 18 519 519 HOH WAT . E 4 HOH A 19 520 520 HOH WAT . E 4 HOH A 20 521 521 HOH WAT . E 4 HOH A 21 522 522 HOH WAT . E 4 HOH A 22 523 523 HOH WAT . E 4 HOH A 23 524 524 HOH WAT . E 4 HOH A 24 525 525 HOH WAT . E 4 HOH A 25 526 526 HOH WAT . E 4 HOH A 26 527 527 HOH WAT . E 4 HOH A 27 528 528 HOH WAT . E 4 HOH A 28 529 529 HOH WAT . E 4 HOH A 29 530 530 HOH WAT . E 4 HOH A 30 531 531 HOH WAT . E 4 HOH A 31 532 532 HOH WAT . E 4 HOH A 32 533 533 HOH WAT . E 4 HOH A 33 534 534 HOH WAT . E 4 HOH A 34 535 535 HOH WAT . E 4 HOH A 35 536 536 HOH WAT . E 4 HOH A 36 537 537 HOH WAT . E 4 HOH A 37 538 538 HOH WAT . E 4 HOH A 38 539 539 HOH WAT . E 4 HOH A 39 540 540 HOH WAT . E 4 HOH A 40 542 542 HOH WAT . E 4 HOH A 41 543 543 HOH WAT . E 4 HOH A 42 544 544 HOH WAT . E 4 HOH A 43 545 545 HOH WAT . E 4 HOH A 44 546 546 HOH WAT . E 4 HOH A 45 547 547 HOH WAT . E 4 HOH A 46 548 548 HOH WAT . E 4 HOH A 47 549 549 HOH WAT . E 4 HOH A 48 551 551 HOH WAT . E 4 HOH A 49 552 552 HOH WAT . E 4 HOH A 50 553 553 HOH WAT . E 4 HOH A 51 554 554 HOH WAT . E 4 HOH A 52 555 555 HOH WAT . E 4 HOH A 53 556 556 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 45.42 4.512 34.032 1 63.79 ? C1 NAG 410 A 1 HETATM 2 C C2 NAG . . . D 3 44.185 3.688 33.628 1 67.9 ? C2 NAG 410 A 1 HETATM 3 C C3 NAG . . . D 3 43.419 4.452 32.548 1 70.57 ? C3 NAG 410 A 1 HETATM 4 C C4 NAG . . . D 3 43.026 5.826 33.094 1 70.7 ? C4 NAG 410 A 1 HETATM 5 C C5 NAG . . . D 3 44.284 6.58 33.558 1 69.39 ? C5 NAG 410 A 1 HETATM 6 C C6 NAG . . . D 3 43.96 7.915 34.216 1 70.77 ? C6 NAG 410 A 1 HETATM 7 C C7 NAG . . . D 3 45.509 2.174 32.265 1 71.49 ? C7 NAG 410 A 1 HETATM 8 C C8 NAG . . . D 3 46.777 1.481 32.741 1 70.38 ? C8 NAG 410 A 1 HETATM 9 N N2 NAG . . . D 3 44.542 2.358 33.162 1 70.41 ? N2 NAG 410 A 1 HETATM 10 O O3 NAG . . . D 3 42.259 3.729 32.166 1 73.34 ? O3 NAG 410 A 1 HETATM 11 O O4 NAG . . . D 3 42.356 6.569 32.085 1 74.06 ? O4 NAG 410 A 1 HETATM 12 O O5 NAG . . . D 3 45.008 5.792 34.534 1 67.56 ? O5 NAG 410 A 1 HETATM 13 O O6 NAG . . . D 3 45.14 8.596 34.632 1 69.62 ? O6 NAG 410 A 1 HETATM 14 O O7 NAG . . . D 3 45.411 2.529 31.09 1 72.84 ? O7 NAG 410 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #