data_1EJ1
#
_model_server_result.job_id            9V_Dv1xEwOBGwxzTmVrcgQ 
_model_server_result.datetime_utc      '2024-11-17 01:37:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ej1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    1EJ1 
#
_exptl.entry_id    1EJ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.235 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EJ1 
_cell.length_a            69.6 
_cell.length_b            75.4 
_cell.length_c            76.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EJ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C11 H18 N5 O11 P2 1' 
_chem_comp.formula_weight    458.235 
_chem_comp.id                M7G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A M7G doub 218 n n 
PA O2A M7G sing 219 n n 
PA O3A M7G sing 220 n n 
PA O5' M7G sing 221 n n 
O2A HOA2 M7G sing 222 n n 
O3A PB M7G sing 223 n n 
O5' C5' M7G sing 224 n n 
PB O1B M7G doub 225 n n 
PB O2B M7G sing 226 n n 
PB O3B M7G sing 227 n n 
O2B HOB2 M7G sing 228 n n 
O3B HOB3 M7G sing 229 n n 
C5' C4' M7G sing 230 n n 
C5' "H5'1" M7G sing 231 n n 
C5' "H5'2" M7G sing 232 n n 
C4' O4' M7G sing 233 n n 
C4' C3' M7G sing 234 n n 
C4' H4' M7G sing 235 n n 
O4' C1' M7G sing 236 n n 
C3' O3' M7G sing 237 n n 
C3' C2' M7G sing 238 n n 
C3' H3' M7G sing 239 n n 
O3' HO3' M7G sing 240 n n 
C2' O2' M7G sing 241 n n 
C2' C1' M7G sing 242 n n 
C2' H2' M7G sing 243 n n 
O2' HO2' M7G sing 244 n n 
C1' N9 M7G sing 245 n n 
C1' H1' M7G sing 246 n n 
N9 C8 M7G sing 247 n y 
N9 C4 M7G sing 248 n y 
C8 N7 M7G doub 249 n y 
C8 H81 M7G sing 250 n n 
N7 CM7 M7G sing 251 n n 
N7 C5 M7G sing 252 n y 
CM7 HM71 M7G sing 253 n n 
CM7 HM72 M7G sing 254 n n 
CM7 HM73 M7G sing 255 n n 
C5 C6 M7G sing 256 n n 
C5 C4 M7G doub 257 n y 
C6 O6 M7G doub 258 n n 
C6 N1 M7G sing 259 n n 
N1 C2 M7G sing 260 n n 
N1 HN1 M7G sing 261 n n 
C2 N2 M7G sing 262 n n 
C2 N3 M7G doub 263 n n 
N2 HN21 M7G sing 264 n n 
N2 HN22 M7G sing 265 n n 
N3 C4 M7G sing 266 n n 
#
_atom_sites.entry_id                     1EJ1 
_atom_sites.fract_transf_matrix[1][1]    0.014368 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013055 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 M7G A 1 1000 1000 M7G M7G . 
D 2 M7G B 1 1001 1001 M7G M7G . 
E 3 HOH A 1 1001 166 HOH HOH . 
E 3 HOH A 2 1002 206 HOH HOH . 
E 3 HOH A 3 1003 174 HOH HOH . 
E 3 HOH A 4 1004 186 HOH HOH . 
E 3 HOH A 5 1005 8 HOH HOH . 
E 3 HOH A 6 1006 35 HOH HOH . 
E 3 HOH A 7 1007 179 HOH HOH . 
E 3 HOH A 8 1008 187 HOH HOH . 
E 3 HOH A 9 1009 7 HOH HOH . 
E 3 HOH A 10 1010 11 HOH HOH . 
E 3 HOH A 11 1011 21 HOH HOH . 
E 3 HOH A 12 1012 25 HOH HOH . 
E 3 HOH A 13 1013 31 HOH HOH . 
E 3 HOH A 14 1014 34 HOH HOH . 
E 3 HOH A 15 1015 37 HOH HOH . 
E 3 HOH A 16 1016 39 HOH HOH . 
E 3 HOH A 17 1017 42 HOH HOH . 
E 3 HOH A 18 1018 43 HOH HOH . 
E 3 HOH A 19 1019 45 HOH HOH . 
E 3 HOH A 20 1020 48 HOH HOH . 
E 3 HOH A 21 1021 50 HOH HOH . 
E 3 HOH A 22 1022 51 HOH HOH . 
E 3 HOH A 23 1023 52 HOH HOH . 
E 3 HOH A 24 1024 58 HOH HOH . 
E 3 HOH A 25 1025 60 HOH HOH . 
E 3 HOH A 26 1026 61 HOH HOH . 
E 3 HOH A 27 1027 62 HOH HOH . 
E 3 HOH A 28 1028 64 HOH HOH . 
E 3 HOH A 29 1029 68 HOH HOH . 
E 3 HOH A 30 1030 71 HOH HOH . 
E 3 HOH A 31 1031 76 HOH HOH . 
E 3 HOH A 32 1032 78 HOH HOH . 
E 3 HOH A 33 1033 80 HOH HOH . 
E 3 HOH A 34 1034 82 HOH HOH . 
E 3 HOH A 35 1035 89 HOH HOH . 
E 3 HOH A 36 1036 91 HOH HOH . 
E 3 HOH A 37 1037 93 HOH HOH . 
E 3 HOH A 38 1038 96 HOH HOH . 
E 3 HOH A 39 1039 99 HOH HOH . 
E 3 HOH A 40 1040 101 HOH HOH . 
E 3 HOH A 41 1041 103 HOH HOH . 
E 3 HOH A 42 1042 105 HOH HOH . 
E 3 HOH A 43 1043 110 HOH HOH . 
E 3 HOH A 44 1044 111 HOH HOH . 
E 3 HOH A 45 1045 112 HOH HOH . 
E 3 HOH A 46 1046 113 HOH HOH . 
E 3 HOH A 47 1047 114 HOH HOH . 
E 3 HOH A 48 1048 120 HOH HOH . 
E 3 HOH A 49 1049 123 HOH HOH . 
E 3 HOH A 50 1050 126 HOH HOH . 
E 3 HOH A 51 1051 129 HOH HOH . 
E 3 HOH A 52 1052 130 HOH HOH . 
E 3 HOH A 53 1053 133 HOH HOH . 
E 3 HOH A 54 1054 225 HOH HOH . 
E 3 HOH A 55 1055 226 HOH HOH . 
E 3 HOH A 56 1056 227 HOH HOH . 
E 3 HOH A 57 1057 230 HOH HOH . 
E 3 HOH A 58 1058 232 HOH HOH . 
E 3 HOH A 59 1059 233 HOH HOH . 
E 3 HOH A 60 1060 234 HOH HOH . 
E 3 HOH A 61 1061 237 HOH HOH . 
E 3 HOH A 62 1062 238 HOH HOH . 
E 3 HOH A 63 1063 241 HOH HOH . 
E 3 HOH A 64 1064 242 HOH HOH . 
E 3 HOH A 65 1065 243 HOH HOH . 
E 3 HOH A 66 1066 246 HOH HOH . 
E 3 HOH A 67 1067 247 HOH HOH . 
E 3 HOH A 68 1068 248 HOH HOH . 
E 3 HOH A 69 1069 249 HOH HOH . 
E 3 HOH A 70 1070 251 HOH HOH . 
E 3 HOH A 71 1071 253 HOH HOH . 
E 3 HOH A 72 1072 254 HOH HOH . 
E 3 HOH A 73 1073 256 HOH HOH . 
E 3 HOH A 74 1074 257 HOH HOH . 
E 3 HOH A 75 1075 258 HOH HOH . 
E 3 HOH A 76 1076 259 HOH HOH . 
E 3 HOH A 77 1077 260 HOH HOH . 
E 3 HOH A 78 1078 262 HOH HOH . 
E 3 HOH A 79 1079 263 HOH HOH . 
F 3 HOH B 1 1002 124 HOH HOH . 
F 3 HOH B 2 1003 195 HOH HOH . 
F 3 HOH B 3 1004 169 HOH HOH . 
F 3 HOH B 4 1005 184 HOH HOH . 
F 3 HOH B 5 1006 161 HOH HOH . 
F 3 HOH B 6 1007 9 HOH HOH . 
F 3 HOH B 7 1008 10 HOH HOH . 
F 3 HOH B 8 1009 12 HOH HOH . 
F 3 HOH B 9 1010 22 HOH HOH . 
F 3 HOH B 10 1011 23 HOH HOH . 
F 3 HOH B 11 1012 26 HOH HOH . 
F 3 HOH B 12 1013 32 HOH HOH . 
F 3 HOH B 13 1014 33 HOH HOH . 
F 3 HOH B 14 1015 36 HOH HOH . 
F 3 HOH B 15 1016 55 HOH HOH . 
F 3 HOH B 16 1017 56 HOH HOH . 
F 3 HOH B 17 1018 59 HOH HOH . 
F 3 HOH B 18 1019 63 HOH HOH . 
F 3 HOH B 19 1020 67 HOH HOH . 
F 3 HOH B 20 1021 69 HOH HOH . 
F 3 HOH B 21 1022 74 HOH HOH . 
F 3 HOH B 22 1023 75 HOH HOH . 
F 3 HOH B 23 1024 85 HOH HOH . 
F 3 HOH B 24 1025 86 HOH HOH . 
F 3 HOH B 25 1026 90 HOH HOH . 
F 3 HOH B 26 1027 94 HOH HOH . 
F 3 HOH B 27 1028 95 HOH HOH . 
F 3 HOH B 28 1029 98 HOH HOH . 
F 3 HOH B 29 1030 100 HOH HOH . 
F 3 HOH B 30 1031 102 HOH HOH . 
F 3 HOH B 31 1032 104 HOH HOH . 
F 3 HOH B 32 1033 106 HOH HOH . 
F 3 HOH B 33 1034 107 HOH HOH . 
F 3 HOH B 34 1035 109 HOH HOH . 
F 3 HOH B 35 1036 115 HOH HOH . 
F 3 HOH B 36 1037 122 HOH HOH . 
F 3 HOH B 37 1038 125 HOH HOH . 
F 3 HOH B 38 1039 127 HOH HOH . 
F 3 HOH B 39 1040 228 HOH HOH . 
F 3 HOH B 40 1041 229 HOH HOH . 
F 3 HOH B 41 1042 231 HOH HOH . 
F 3 HOH B 42 1043 235 HOH HOH . 
F 3 HOH B 43 1044 236 HOH HOH . 
F 3 HOH B 44 1045 239 HOH HOH . 
F 3 HOH B 45 1046 240 HOH HOH . 
F 3 HOH B 46 1047 244 HOH HOH . 
F 3 HOH B 47 1048 245 HOH HOH . 
F 3 HOH B 48 1049 250 HOH HOH . 
F 3 HOH B 49 1050 252 HOH HOH . 
F 3 HOH B 50 1051 255 HOH HOH . 
F 3 HOH B 51 1052 261 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA M7G . . . C 2 4.418 11.773 14.326 1 25.7 ? PA M7G 1000 A 1 
HETATM 2 O O1A M7G . . . C 2 4.95 11.847 12.934 1 26.75 ? O1A M7G 1000 A 1 
HETATM 3 O O2A M7G . . . C 2 4.818 10.458 14.881 1 25.28 ? O2A M7G 1000 A 1 
HETATM 4 O O3A M7G . . . C 2 5.08 12.946 15.243 1 25.16 ? O3A M7G 1000 A 1 
HETATM 5 O O5' M7G . . . C 2 2.779 11.869 14.344 1 23.99 ? O5' M7G 1000 A 1 
HETATM 6 P PB M7G . . . C 2 4.651 14.509 15.233 1 24.87 ? PB M7G 1000 A 1 
HETATM 7 O O1B M7G . . . C 2 4.732 15.083 13.864 1 27.04 ? O1B M7G 1000 A 1 
HETATM 8 O O2B M7G . . . C 2 5.611 15.23 16.108 1 24.82 ? O2B M7G 1000 A 1 
HETATM 9 O O3B M7G . . . C 2 3.265 14.672 15.747 1 25 ? O3B M7G 1000 A 1 
HETATM 10 C C5' M7G . . . C 2 2.039 12.541 13.352 1 20.73 ? C5' M7G 1000 A 1 
HETATM 11 C C4' M7G . . . C 2 0.814 11.828 12.892 1 20.4 ? C4' M7G 1000 A 1 
HETATM 12 O O4' M7G . . . C 2 1.216 10.8 11.925 1 17.96 ? O4' M7G 1000 A 1 
HETATM 13 C C3' M7G . . . C 2 0.143 10.948 13.9 1 19.82 ? C3' M7G 1000 A 1 
HETATM 14 O O3' M7G . . . C 2 -0.626 11.721 14.854 1 22.06 ? O3' M7G 1000 A 1 
HETATM 15 C C2' M7G . . . C 2 -0.812 10.162 12.968 1 18.1 ? C2' M7G 1000 A 1 
HETATM 16 O O2' M7G . . . C 2 -1.84 11.016 12.387 1 19.54 ? O2' M7G 1000 A 1 
HETATM 17 C C1' M7G . . . C 2 0.231 9.736 11.939 1 15.5 ? C1' M7G 1000 A 1 
HETATM 18 N N9 M7G . . . C 2 1.103 8.581 12.346 1 13.07 ? N9 M7G 1000 A 1 
HETATM 19 C C8 M7G . . . C 2 2.255 8.468 13.018 1 11.69 ? C8 M7G 1000 A 1 
HETATM 20 N N7 M7G . . . C 2 2.546 7.2 13.107 1 9.85 ? N7 M7G 1000 A 1 
HETATM 21 C CM7 M7G . . . C 2 3.715 6.625 13.762 1 10.63 ? CM7 M7G 1000 A 1 
HETATM 22 C C5 M7G . . . C 2 1.539 6.346 12.451 1 10.08 ? C5 M7G 1000 A 1 
HETATM 23 C C6 M7G . . . C 2 1.359 5.107 12.262 1 9.5 ? C6 M7G 1000 A 1 
HETATM 24 O O6 M7G . . . C 2 2.153 4.183 12.691 1 9.84 ? O6 M7G 1000 A 1 
HETATM 25 N N1 M7G . . . C 2 0.186 4.886 11.55 1 9.16 ? N1 M7G 1000 A 1 
HETATM 26 C C2 M7G . . . C 2 -0.681 5.853 11.09 1 9.49 ? C2 M7G 1000 A 1 
HETATM 27 N N2 M7G . . . C 2 -1.753 5.491 10.421 1 10.36 ? N2 M7G 1000 A 1 
HETATM 28 N N3 M7G . . . C 2 -0.476 7.133 11.294 1 10.88 ? N3 M7G 1000 A 1 
HETATM 29 C C4 M7G . . . C 2 0.663 7.369 12 1 10.46 ? C4 M7G 1000 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           29 
#